MD12G1193500.v1.1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0017151
Physical Location & Seq
Forward (+)
27510874 .. 27513370
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1193500.v1.1.491

Sequence Viewer

Length: 201 bp
ATGTCACTGGTATGGATGGAAGCGCTACTTCCGCTCGGAATCATTGCCGGAATGCTATGCGTCATGGGAAATGCTCAGTATTATATCCACAAAGCCGCCCATGGCCGGCCTAAGCACATTGGGAACGACATGTGGGACGTGGCGATGGAGAGAAGGGACAAGAAGCTCGTGGAGCAGGCGTTTGCCCATATCCAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
MWFE

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

7.97

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MWFE PF15879 5 - 56 4.4e-16 NADH-ubiquinone oxidoreductase MWFE subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08610
fragaria_vesca FvH4_6g09420
malus_domestica MD04G1177900.v1.1 MD12G1193500.v1.1
prunus_persica Prupe.6G297800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459881
rosa_multiflora Rmu_co8074100.1_g000001 Rmu_sc0000240.1_g000043
rosa_roxburghii Rroxscaffold_6G00419940
rosa_rugosa Rorug03G0038100 Rorug03G0038200.1 Rorug03G0038300.1 Rorug03G0038400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 32, 96
AcoI YGGCCR 1 cut(s) 103
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 129
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 2 cut(s) 103, 107
AspLEI GCGC 1 cut(s) 25
BauI CACGAG 1 cut(s) 167
BccI CCATC 2 cut(s) 10, 139
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 12
BshFI GGCC 2 cut(s) 105, 109
BsiSI CCGG 2 cut(s) 48, 106
BslFI GGGAC 2 cut(s) 149, 170
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 149, 170
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 2 cut(s) 105, 109
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 2 cut(s) 32, 96
BspANI GGCC 2 cut(s) 105, 109
BspCNI CTCAG 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 100
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 107, 177
BstDEI CTNAG 2 cut(s) 75, 111
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 31, 172
BstNSI RCATGY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 105, 109
BtgI CCRYGG 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 158
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 107, 177
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 105
CseI GACGC 1 cut(s) 49
CviAII CATG 3 cut(s) 64, 101, 130
CviJI RGCY 4 cut(s) 95, 105, 109, 166
CviKI_1 RGCY 4 cut(s) 95, 105, 109, 166
DdeI CTNAG 2 cut(s) 75, 111
EaeI YGGCCR 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 100
Eco47III AGCGCT 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 67, 104, 133
FaiI YATR 7 cut(s) 13, 58, 65, 84, 102, 131, 189
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 2 cut(s) 149, 170
FatI CATG 3 cut(s) 63, 100, 129
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 28
FseI GGCCGGCC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 105, 109
HapII CCGG 2 cut(s) 48, 106
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 67, 104, 133
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 39
HpaII CCGG 2 cut(s) 48, 106
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 172
HpyF3I CTNAG 2 cut(s) 75, 111
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 3 cut(s) 67, 104, 133
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 61, 119, 161
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 3
MbiI CCGCTC 1 cut(s) 34
MluCI AATT 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 2 cut(s) 48, 106
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 31, 172
NaeI GCCGGC 1 cut(s) 107
NcoI CCATGG 1 cut(s) 100
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 3 cut(s) 67, 104, 133
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PctI GAATGC 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 129
RigI GGCCGGCC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 10
SatI GCNGC 1 cut(s) 96
SetI ASST 2 cut(s) 141, 168
SmiMI CAYNNNNRTG 1 cut(s) 10
Sse9I AATT 1 cut(s) 196
SsiI CCGC 2 cut(s) 32, 96
StyI CCWWGG 1 cut(s) 100
TaiI ACGT 1 cut(s) 141
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 39
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspRI CASTG 1 cut(s) 12
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.