Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008799

Physical Location & Seq

Genomic Coordinates Reverse (-)

2654622 .. 2656297

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGGAAGAGCGATTTTCTCTGTATCTTGTTCATCTACTCCTTCCTTGTGTATCCCTTATTCAACTGCTTCGTTTTCATCGATGAATCGACTGGCGCTCCCCGCCGTCCGGATTTCTCCCCGAACCAACAGATTTCCCAGGATTCACTGCTCTATGTCTGCTAACGACATCAAAGCGGGAACCAATATCGAAGTCGATGGTGCTCCTTGGCGTGTTCTTGAGTTTCTTCATGTTAAACCAGGAAAAGGTGCGGCATTTGTGAGAACTAAGATCAGGAACTATGTGAATGGTAGCACAGTCGAGAGAACATTTCGTGCTGGAATTTCTGTTGAGGAAGCTAATATATATAAAGAAACCAAACAATTCACATACAAAGATGGGTCTCAGTTTGTTTTCATGGATTTGACCACATACGAAGAAACACGTCTTAACGAATCTGATATGGGTGAGAAGACGAAATGGTTGAAAGAAGGAATGGATTGCATTTTGCTCTATTGGAAAGACAAGGTTATCGATTTCGATCTACCGATTACAGTTAAGCTAAAAGTGGTTGACGTTGATCCTGGCCTTCGCGGTGATACTGTGCAAGGTGGATCAAAACCGGCGACAATGGAAACGGGTGCAATAGTTGCTGTACCACTCTTTATTAACGTCGGTGAAGAGATATTTGTGGACACAAGAACTGGTGCATACATGAACCGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

236

Amino Acids

26.23

Weight (kDa)

8.61

Isoelectric Point (pI)

26.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	54 - 110	1.2e-25	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	122 - 172	2e-19	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	180 - 235	7.5e-24	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08740
fragaria_vesca	FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890
malus_domestica	MD12G1188200.v1.1
prunus_persica	Prupe.6G293500_v2.0.a1 Prupe.6G293500_v2.0.a1
pyrus_communis	pycom12g17590
rosa_chinensis	RchiOBHm_Chr3g0460491
rosa_laevigata	RLG00000025001 RLG00000025007
rosa_multiflora	Rmu_sc0004267.1_g000006 Rmu_sc0030082.1_g000003
rosa_roxburghii	Rroxscaffold_6G00419440
rosa_rugosa	Rorug03G0043000
rosa_samantha	Rh3AG101100 Rh3BG105100 Rh3CG106900 Rh3DG106400
rosa_wichuraiana	Rw3G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	5 cut(s)	5, 105, 179, 254, 576
AclWI	GGATC	2 cut(s)	557, 604
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	1 cut(s)	639
AfiI	CCNNNNNNNGG	2 cut(s)	111, 248
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	66, 469
AjiI	CACGTC	1 cut(s)	428
AjnI	CCWGG	3 cut(s)	140, 241, 565
AluBI	AGCT	2 cut(s)	341, 544
AluI	AGCT	2 cut(s)	341, 544
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	557, 604
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	461, 590, 671
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	2 cut(s)	194, 374
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	3 cut(s)	142, 243, 567
BciVI	GTATCC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	3 cut(s)	142, 243, 567
BmgBI	CACGTC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	142, 243, 567
BpiI	GAAGAC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	242
Bsa29I	ATCGAT	2 cut(s)	83, 516
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	140, 209
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 248
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	99, 691
Bse8I	GATNNNNATC	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	142, 243, 567
BseCI	ATCGAT	2 cut(s)	83, 516
BseDI	CCNNGG	2 cut(s)	140, 209
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	111, 248
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	2 cut(s)	99, 691
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	570
BshVI	ATCGAT	2 cut(s)	83, 516
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	112, 605
BslI	CCNNNNNNNGG	2 cut(s)	111, 248
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	273, 523, 562, 596
BspACI	CCGC	5 cut(s)	5, 105, 179, 254, 576
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	2 cut(s)	83, 516
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	557, 604
BspQI	GCTCTTC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	99, 691
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	140, 209
BssMI	GATC	4 cut(s)	273, 523, 562, 596
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	3 cut(s)	142, 243, 567
Bst4CI	ACNGT	3 cut(s)	301, 538, 586
Bst6I	CTCTTC	2 cut(s)	4, 657
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstDEI	CTNAG	2 cut(s)	270, 387
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	4 cut(s)	276, 526, 565, 599
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	4 cut(s)	273, 523, 562, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 104, 632
BstNI	CCWGG	3 cut(s)	142, 243, 567
BstSCI	CCNGG	3 cut(s)	140, 241, 565
BstUI	CGCG	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	461
Bsu15I	ATCGAT	2 cut(s)	83, 516
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	570
BsuTUI	ATCGAT	2 cut(s)	83, 516
BtrI	CACGTC	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	604
ClaI	ATCGAT	2 cut(s)	83, 516
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	3 cut(s)	233, 400, 697
CviJI	RGCY	3 cut(s)	341, 544, 570
CviKI_1	RGCY	3 cut(s)	341, 544, 570
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	2 cut(s)	270, 387
DpnI	GATC	4 cut(s)	275, 525, 564, 598
DpnII	GATC	4 cut(s)	273, 523, 562, 596
Eam1104I	CTCTTC	2 cut(s)	4, 657
EarI	CTCTTC	2 cut(s)	4, 657
Eco130I	CCWWGG	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	390
EcoRII	CCWGG	3 cut(s)	140, 241, 565
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	236, 403, 700
FatI	CATG	3 cut(s)	232, 399, 696
FauI	CCCGC	2 cut(s)	112, 172
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	2 cut(s)	112, 605
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	236, 403, 700
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	88, 145, 437
HpaII	CCGG	2 cut(s)	112, 605
HphI	GGTGA	3 cut(s)	461, 590, 671
Hpy166II	GTNNAC	2 cut(s)	556, 676
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	4 cut(s)	112, 221, 277, 304
Hpy8I	GTNNAC	2 cut(s)	556, 676
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	54, 467, 581
HpyCH4III	ACNGT	3 cut(s)	301, 538, 586
HpyCH4IV	ACGT	3 cut(s)	427, 558, 654
HpyCH4V	TGCA	4 cut(s)	486, 589, 626, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 104, 632
HpyF3I	CTNAG	2 cut(s)	270, 387
HpySE526I	ACGT	3 cut(s)	427, 558, 654
Hsp92II	CATG	3 cut(s)	236, 403, 700
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	273, 523, 562, 596
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	105, 211
MaeII	ACGT	3 cut(s)	427, 558, 654
MalI	GATC	4 cut(s)	275, 525, 564, 598
MboI	GATC	4 cut(s)	273, 523, 562, 596
MboII	GAAGA	5 cut(s)	21, 221, 431, 466, 674
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	324, 365
MnlI	CCTC	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	4 cut(s)	237, 432, 540, 651
MspI	CCGG	2 cut(s)	112, 605
MspR9I	CCNGG	3 cut(s)	142, 243, 567
MvaI	CCWGG	3 cut(s)	142, 243, 567
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	11, 104, 632
NdeII	GATC	4 cut(s)	273, 523, 562, 596
NlaIII	CATG	3 cut(s)	236, 403, 700
NlaIV	GGNNCC	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	88, 145, 437
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	140, 241, 565
PspGI	CCWGG	3 cut(s)	140, 241, 565
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	237, 432, 540, 651
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	273, 523, 562, 596
ScrFI	CCNGG	3 cut(s)	142, 243, 567
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	253, 343, 430, 513, 546, 561, 595, 657
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	324, 365
SsiI	CCGC	5 cut(s)	5, 105, 179, 254, 576
StyD4I	CCNGG	3 cut(s)	140, 241, 565
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	301, 538, 586
TaiI	ACGT	3 cut(s)	430, 561, 657
TaqI	TCGA	7 cut(s)	83, 91, 192, 198, 303, 516, 522
TasI	AATT	2 cut(s)	324, 365
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	88, 145, 437
Tru1I	TTAA	4 cut(s)	237, 432, 540, 651
Tru9I	TTAA	4 cut(s)	237, 432, 540, 651
TscAI	CASTG	1 cut(s)	155
TspDTI	ATGAA	5 cut(s)	24, 69, 101, 221, 388
TspRI	CASTG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.