Prupe.6G293500_v2.0.a1

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008799
Physical Location & Seq
Forward (+)
26975395 .. 26978425
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G293500.1

Sequence Viewer

Length: 717 bp
ATGGCGGGAATGGCAACATCCTTCAATGTCTCATCAGCTTCCTCCATCCTCAGCCGTCCATCACAGCTATCATCACTTTCATTCTCATCCAAGCCGTTCTTTCTGCCAATGCGGAGTTCTGCCCGAACGCCCCTACGTCTCAGATGTCCCAGGATAATGGCGTTTTCTAGCAACGATATCAAAGTGGGTTCCAACATTGAAGTTGATGGAGCTCCTTGGCGAGTTATAGAATTTCTTCATGTGAAACCTGGGAAAGGGGCTGCATTTGTAAGGACCAAGATGCGCAATTATATATCAGGAAACACTGTTGAGAAAACATTTCGAGCGGGCAGCACGATTAATGAGGCAAATATATACAAGGAAACAAAGCAATTCACATACAAAGACGGTCCCCAGTTTGTATTCATGGACTTGACTACCTATGAAGAAACTCGTGTAAATGAATCAAGTATCGGGGACAAAACAAAATGGCTGAAAGAGGGAATGGACTGCAATTTGCTTCTTTGGAATGATAGACTTATCGATGTTGACATCCCCATCACAGTGAAACTGACTGTGGTTGATGTTGATCCTGGACTTAAAGGTGACACAGCTCAAGGTGGATCGAAGCCAGCGACTCTCGACACCGGTGCTATTGTCAATGTCCCACTCTTTGTAAATATAGGTGATGAAATAATGGTGGATACCAGAACTGGGCAATACATGAATCGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

9.03

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 326
AccII CGCG 1 cut(s) 711
AciI CCGC 3 cut(s) 5, 112, 326
AclWI GGATC 2 cut(s) 563, 610
AcsI RAATTY 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 254, 693
AgeI ACCGGT 1 cut(s) 626
AgsI TTSAA 2 cut(s) 25, 200
AjnI CCWGG 3 cut(s) 149, 247, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 4 cut(s) 38, 67, 212, 593
AluI AGCT 4 cut(s) 38, 67, 212, 593
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 2 cut(s) 34, 143
AlwI GGATC 2 cut(s) 563, 610
ApeKI GCWGC 2 cut(s) 260, 330
ApoI RAATTY 1 cut(s) 230
AseI ATTAAT 1 cut(s) 339
AsiGI ACCGGT 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 285, 713
AspS9I GGNCC 2 cut(s) 273, 389
AsuHPI GGTGA 2 cut(s) 596, 677
AvaII GGWCC 2 cut(s) 273, 389
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 247, 342
BccI CCATC 4 cut(s) 53, 67, 200, 545
BceAI ACGGC 2 cut(s) 39, 79
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 3 cut(s) 151, 249, 573
BciVI GTATCC 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 34, 143
BfaI CTAG 1 cut(s) 168
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 2 cut(s) 261, 331
BlsI GCNGC 2 cut(s) 262, 332
Bme1390I CCNGG 3 cut(s) 151, 249, 573
Bme18I GGWCC 2 cut(s) 273, 389
BmgT120I GGNCC 2 cut(s) 273, 389
BmiI GGNNCC 2 cut(s) 190, 391
BmrFI CCNGG 3 cut(s) 151, 249, 573
BmrI ACTGGG 2 cut(s) 388, 702
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 2 cut(s) 388, 702
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 579
Bsa29I ATCGAT 1 cut(s) 522
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 3 cut(s) 149, 215, 248
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 693
Bse118I RCCGGY 1 cut(s) 626
Bse1I ACTGG 2 cut(s) 394, 697
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 3 cut(s) 151, 249, 573
BseCI ATCGAT 1 cut(s) 522
BseDI CCNNGG 3 cut(s) 149, 215, 248
BseGI GGATG 4 cut(s) 17, 45, 86, 531
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 254, 693
BseMII CTCAG 2 cut(s) 64, 154
BseNI ACTGG 2 cut(s) 394, 697
BseXI GCAGC 2 cut(s) 247, 342
Bsh1236I CGCG 1 cut(s) 711
BshTI ACCGGT 1 cut(s) 626
BshVI ATCGAT 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 4 cut(s) 132, 375, 470, 629
BslI CCNNNNNNNGG 2 cut(s) 254, 693
BsmAI GTCTC 2 cut(s) 34, 143
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 4 cut(s) 132, 375, 470, 629
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 568, 602
BspACI CCGC 3 cut(s) 5, 112, 326
BspCNI CTCAG 2 cut(s) 63, 153
BspDI ATCGAT 1 cut(s) 522
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 2 cut(s) 190, 391
BspPI GGATC 2 cut(s) 563, 610
BsrBI CCGCTC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 626
BsrI ACTGG 2 cut(s) 394, 697
BssAI RCCGGY 1 cut(s) 626
BssECI CCNNGG 3 cut(s) 149, 215, 248
BssMI GATC 2 cut(s) 568, 602
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 151, 249, 573
Bst4CI ACNGT 4 cut(s) 307, 389, 544, 556
BstC8I GCNNGC 2 cut(s) 328, 612
BstDEI CTNAG 2 cut(s) 50, 140
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 4 cut(s) 17, 45, 86, 531
BstFNI CGCG 1 cut(s) 711
BstHHI GCGC 2 cut(s) 285, 713
BstKTI GATC 2 cut(s) 571, 605
BstMAI GTCTC 2 cut(s) 34, 143
BstMBI GATC 2 cut(s) 568, 602
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 151, 249, 573
BstSCI CCNGG 3 cut(s) 149, 247, 571
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 2 cut(s) 247, 342
BstXI CCANNNNNNTGG 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 522
BsuI GTATCC 1 cut(s) 676
BsuTUI ATCGAT 1 cut(s) 522
BtsCI GGATG 4 cut(s) 17, 45, 86, 531
BtsIMutI CAGTG 2 cut(s) 303, 549
Cac8I GCNNGC 2 cut(s) 328, 612
CfoI GCGC 2 cut(s) 285, 713
Cfr10I RCCGGY 1 cut(s) 626
Cfr13I GGNCC 2 cut(s) 273, 389
ClaI ATCGAT 1 cut(s) 522
CspAI ACCGGT 1 cut(s) 626
CviAII CATG 3 cut(s) 239, 406, 703
CviJI RGCY 9 cut(s) 38, 54, 67, 94, 212, 260, 472, 593, 610
CviKI_1 RGCY 9 cut(s) 38, 54, 67, 94, 212, 260, 472, 593, 610
DdeI CTNAG 2 cut(s) 50, 140
DpnI GATC 2 cut(s) 570, 604
DpnII GATC 2 cut(s) 568, 602
Ecl136II GAGCTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 273, 389
Eco53kI GAGCTC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 3 cut(s) 149, 247, 571
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 242, 409, 706
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 4 cut(s) 132, 375, 470, 629
FatI CATG 3 cut(s) 238, 405, 702
FauI CCCGC 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 261, 331
FokI GGATG 4 cut(s) 4, 32, 73, 518
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 261, 331
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 2 cut(s) 284, 712
GluI GCNGC 2 cut(s) 261, 331
HapII CCGG 1 cut(s) 627
HhaI GCGC 2 cut(s) 285, 713
Hin1II CATG 3 cut(s) 242, 409, 706
Hin6I GCGC 2 cut(s) 283, 711
HinP1I GCGC 2 cut(s) 283, 711
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 3 cut(s) 443, 616, 706
HpaII CCGG 1 cut(s) 627
HphI GGTGA 2 cut(s) 596, 677
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 297, 620
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 4 cut(s) 307, 389, 544, 556
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 263, 492
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 50, 140
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 3 cut(s) 242, 409, 706
HspAI GCGC 2 cut(s) 283, 711
Kzo9I GATC 2 cut(s) 568, 602
LmnI GCTCC 2 cut(s) 209, 217
Lsp1109I GCAGC 2 cut(s) 247, 342
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 584
MalI GATC 2 cut(s) 570, 604
MbiI CCGCTC 1 cut(s) 326
MboI GATC 2 cut(s) 568, 602
MboII GAAGA 2 cut(s) 227, 437
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 4 cut(s) 230, 286, 371, 493
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 52, 59, 337, 472
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 2 cut(s) 339, 579
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 3 cut(s) 151, 249, 573
MvaI CCWGG 3 cut(s) 151, 249, 573
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 568, 602
NlaIII CATG 3 cut(s) 242, 409, 706
NlaIV GGNNCC 2 cut(s) 190, 391
NmuCI GTSAC 1 cut(s) 584
NsbI TGCGCA 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 443, 706
PfoI TCCNGGA 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 626
PkrI GCNGC 2 cut(s) 262, 332
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 149, 247, 571
PspGI CCWGG 3 cut(s) 149, 247, 571
PspN4I GGNNCC 2 cut(s) 190, 391
PspPI GGNCC 2 cut(s) 273, 389
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 339, 579
SatI GCNGC 2 cut(s) 261, 331
Sau3AI GATC 2 cut(s) 568, 602
Sau96I GGNCC 2 cut(s) 273, 389
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 3 cut(s) 151, 249, 573
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 1 cut(s) 270
SgrAI CRCCGGYG 1 cut(s) 626
SinI GGWCC 2 cut(s) 273, 389
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
Sse9I AATT 4 cut(s) 230, 286, 371, 493
SsiI CCGC 3 cut(s) 5, 112, 326
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 149, 247, 571
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 4 cut(s) 307, 389, 544, 556
TaiI ACGT 1 cut(s) 139
TaqI TCGA 4 cut(s) 322, 522, 605, 621
TasI AATT 4 cut(s) 230, 286, 371, 493
TfiI GAWTC 2 cut(s) 443, 706
Tru1I TTAA 2 cut(s) 339, 579
Tru9I TTAA 2 cut(s) 339, 579
TscAI CASTG 2 cut(s) 310, 549
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 2 cut(s) 260, 330
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 6 cut(s) 69, 227, 394, 438, 456, 684
TspRI CASTG 2 cut(s) 310, 549
VpaK11BI GGWCC 2 cut(s) 273, 389
VspI ATTAAT 1 cut(s) 339
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.