Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008799

Physical Location & Seq

Genomic Coordinates Forward (+)

19981834 .. 19985159

Gene Structure 3326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTGAATGCTAAGAAGGAATGCGTATTGGGAGTTAGGGATGGGTTGGAGAGAAACTTTGGGATGTTATATGTTCGATTACAACTGCAAACAAGTTCCGGCGAAATTTACAGAGAAAATCACACACCTTTGCTTCTCAAACAATCCACAGCCATGGCGGGAATGGCTACCTCCTTCAACGTCTCCTCCGCCTCCTCCATCCTCAGCCGTCCGTCGCAGCTTTCGTCGCTTTCGTTCTCGTCCAAGCCGTTCTTTCTTGCCATGCGGAGTTCTTCCCGAACCCCCCTGCGTCTCGGATTTCCCAGGATAATGGCGTTTTCCAGCAACGATATAAAAGTGGGTTCCAACATTGAAGTTGATGGAGCTCCGTGGCGAGTTATAGAGTTTCTTCACGTGAAACCTGGGAAAGGGGCGGCATTTGTAAGGACCAAAATGCGCAATTATGTATCGGGAAACACTGTTGAGAAAACATTTCGAGCTGGAAGCACGATTAATGAGGCAAATATATACAAGGAAACAAAGCAATTCGTATACAAAGATGGTCCCCAGTTTGTCTTCATGGACCTGACTACCTATGAAGAAACTCGTGTAAATGAATCGAGTATTGGGGACAAAACAAAGTGGCTGAAAGAGGGCATGGACTGCAATTTGCTTCTTTGGAATGATAAACTTATCGATGTTGATATCCCCATCACAGTGCAGCTGAAGGTGGTTGATGTTGATCCCGGACTGAAAGGTGACACAGCTCAAGGAGGTGGAACAAAGCCTGCAACTCTTGAGACCGGTGCTGTTGTCTTTGTCCCGCTGTTCGTAAATGTAGGTGATGAAATACTGGTGGATACCAGAACGGGGCAATACATGACCCGAGCTGAGAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

294

Amino Acids

32.46

Weight (kDa)

9.08

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	107 - 163	3e-25	Elongation factor P (EF-P) KOW-like domain
EFP	PF01132	175 - 225	2e-19	Elongation factor P (EF-P) OB domain
Elong-fact-P_C	PF09285	233 - 289	1e-24	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08740
fragaria_vesca	FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890
malus_domestica	MD12G1188200.v1.1
prunus_persica	Prupe.6G293500_v2.0.a1 Prupe.6G293500_v2.0.a1
pyrus_communis	pycom12g17590
rosa_chinensis	RchiOBHm_Chr3g0460491
rosa_laevigata	RLG00000025001 RLG00000025007
rosa_multiflora	Rmu_sc0004267.1_g000006 Rmu_sc0030082.1_g000003
rosa_roxburghii	Rroxscaffold_6G00419440
rosa_rugosa	Rorug03G0043000
rosa_samantha	Rh3AG101100 Rh3BG105100 Rh3CG106900 Rh3DG106400
rosa_wichuraiana	Rw3G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	5 cut(s)	158, 189, 265, 413, 803
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	725
AcvI	CACGTG	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	407, 849
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	3 cut(s)	7, 178, 353
AjnI	CCWGG	2 cut(s)	302, 400
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	6 cut(s)	220, 365, 479, 703, 746, 869
AluI	AGCT	6 cut(s)	220, 365, 479, 703, 746, 869
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	187, 296, 773
AlwI	GGATC	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	864
ApeKI	GCWGC	2 cut(s)	217, 700
ApoI	RAATTY	1 cut(s)	105
AseI	ATTAAT	1 cut(s)	492
AsiGI	ACCGGT	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	426, 542, 562
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	749, 833
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	3 cut(s)	426, 542, 562
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	585
BbrPI	CACGTG	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	229, 712
BccI	CCATC	5 cut(s)	35, 206, 353, 533, 698
BceAI	ACGGC	2 cut(s)	192, 232
BciT130I	CCWGG	2 cut(s)	304, 402
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	3 cut(s)	187, 296, 773
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	3 cut(s)	218, 414, 701
BlsI	GCNGC	3 cut(s)	219, 415, 702
Bme1390I	CCNGG	3 cut(s)	304, 402, 726
Bme18I	GGWCC	3 cut(s)	426, 542, 562
BmeT110I	CYCGRG	1 cut(s)	864
BmgT120I	GGNCC	3 cut(s)	426, 542, 562
BmiI	GGNNCC	2 cut(s)	343, 544
BmrFI	CCNGG	3 cut(s)	304, 402, 726
BmrI	ACTGGG	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	732, 797
BpuMI	CCSGG	1 cut(s)	726
Bsa29I	ATCGAT	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	773
BsaJI	CCNNGG	4 cut(s)	153, 302, 368, 401
BsaWI	WCCGGW	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 849
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	2 cut(s)	547, 837
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	304, 402
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	4 cut(s)	153, 302, 368, 401
BseGI	GGATG	3 cut(s)	46, 69, 198
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	407, 849
BseMII	CTCAG	2 cut(s)	217, 861
BseNI	ACTGG	2 cut(s)	547, 837
BseRI	GAGGAG	2 cut(s)	175, 184
BseXI	GCAGC	2 cut(s)	229, 712
BsgI	GTGCAG	1 cut(s)	719
BshTI	ACCGGT	1 cut(s)	782
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	3 cut(s)	99, 726, 783
BslFI	GGGAC	3 cut(s)	528, 623, 785
BslI	CCNNNNNNNGG	2 cut(s)	407, 849
BsmAI	GTCTC	3 cut(s)	187, 296, 773
BsmBI	CGTCTC	2 cut(s)	187, 296
BsmFI	GGGAC	3 cut(s)	528, 623, 785
BsmI	GAATGC	2 cut(s)	13, 26
Bso31I	GGTCTC	1 cut(s)	773
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	5 cut(s)	158, 189, 265, 413, 803
BspCNI	CTCAG	2 cut(s)	216, 862
BspDI	ATCGAT	1 cut(s)	675
BspLI	GGNNCC	2 cut(s)	343, 544
BspPI	GGATC	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	773
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	547, 837
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	4 cut(s)	153, 302, 368, 401
BssMI	GATC	1 cut(s)	721
BssNAI	GTATAC	1 cut(s)	532
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	304, 402
Bst4CI	ACNGT	2 cut(s)	460, 697
BstAPI	GCANNNNNTGC	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	3 cut(s)	12, 203, 870
BstDSI	CCRYGG	2 cut(s)	153, 368
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	46, 69, 198
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	3 cut(s)	187, 296, 773
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 226, 642
BstNI	CCWGG	2 cut(s)	304, 402
BstSCI	CCNGG	3 cut(s)	302, 400, 724
BstV1I	GCAGC	2 cut(s)	229, 712
BstV2I	GAAGAC	1 cut(s)	547
BstXI	CCANNNNNNTGG	2 cut(s)	154, 310
BstZ17I	GTATAC	1 cut(s)	532
Bsu15I	ATCGAT	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	832
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	2 cut(s)	153, 368
BtsCI	GGATG	3 cut(s)	46, 69, 198
BtsIMutI	CAGTG	2 cut(s)	456, 702
Cac8I	GCNNGC	1 cut(s)	768
CfoI	GCGC	1 cut(s)	438
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	3 cut(s)	426, 542, 562
ClaI	ATCGAT	1 cut(s)	675
CseI	GACGC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	5 cut(s)	154, 262, 559, 637, 859
DdeI	CTNAG	3 cut(s)	12, 203, 870
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
EciI	GGCGGA	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	773
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	3 cut(s)	426, 542, 562
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	725
Eco72I	CACGTG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	864
EcoICRI	GAGCTC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	302, 400
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	2 cut(s)	187, 296
FaeI	CATG	5 cut(s)	157, 265, 562, 640, 862
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	3 cut(s)	528, 623, 785
FatI	CATG	5 cut(s)	153, 261, 558, 636, 858
FauI	CCCGC	2 cut(s)	151, 810
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	218, 414, 701
FokI	GGATG	3 cut(s)	53, 76, 185
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	3 cut(s)	218, 414, 701
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	3 cut(s)	218, 414, 701
HapII	CCGG	3 cut(s)	99, 726, 783
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	157, 265, 562, 640, 862
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	596
HpaII	CCGG	3 cut(s)	99, 726, 783
HphI	GGTGA	2 cut(s)	749, 833
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	3 cut(s)	276, 450, 776
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	2 cut(s)	217, 229
HpyAV	CCTTC	3 cut(s)	10, 184, 700
HpyCH4III	ACNGT	2 cut(s)	460, 697
HpyCH4IV	ACGT	2 cut(s)	180, 393
HpyCH4V	TGCA	4 cut(s)	88, 645, 700, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 226, 642
HpyF3I	CTNAG	3 cut(s)	12, 203, 870
HpySE526I	ACGT	2 cut(s)	180, 393
Hsp92II	CATG	5 cut(s)	157, 265, 562, 640, 862
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	362, 370
Lsp1109I	GCAGC	2 cut(s)	229, 712
MaeII	ACGT	2 cut(s)	180, 393
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	4 cut(s)	264, 380, 547, 590
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	5 cut(s)	105, 439, 524, 646, 877
MmeI	TCCRAC	2 cut(s)	27, 369
MnlI	CCTC	8 cut(s)	181, 196, 202, 205, 212, 490, 625, 746
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	152, 695
MspA1I	CMGCKG	2 cut(s)	703, 805
MspI	CCGG	3 cut(s)	99, 726, 783
MspR9I	CCNGG	3 cut(s)	304, 402, 726
Mva1269I	GAATGC	2 cut(s)	13, 26
MvaI	CCWGG	2 cut(s)	304, 402
MwoI	GCNNNNNNNGC	3 cut(s)	164, 226, 642
NciI	CCSGG	1 cut(s)	726
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	157, 265, 562, 640, 862
NlaIV	GGNNCC	2 cut(s)	343, 544
NmuCI	GTSAC	1 cut(s)	737
NsbI	TGCGCA	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	221, 230, 245
PctI	GAATGC	2 cut(s)	13, 26
PfeI	GAWTC	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	724
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	219, 415, 702
PmaCI	CACGTG	1 cut(s)	394
PmlI	CACGTG	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	302, 400
PspCI	CACGTG	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	302, 400
PspN4I	GGNNCC	2 cut(s)	343, 544
PspPI	GGNCC	3 cut(s)	426, 542, 562
PvuII	CAGCTG	1 cut(s)	703
RseI	CAYNNNNRTG	2 cut(s)	152, 695
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	218, 414, 701
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	3 cut(s)	426, 542, 562
ScrFI	CCNGG	3 cut(s)	304, 402, 726
SduI	GDGCHC	1 cut(s)	367
SinI	GGWCC	3 cut(s)	426, 542, 562
SmiMI	CAYNNNNRTG	2 cut(s)	152, 695
SmlI	CTYRAG	2 cut(s)	747, 776
SmoI	CTYRAG	2 cut(s)	747, 776
Sse9I	AATT	5 cut(s)	105, 439, 524, 646, 877
SsiI	CCGC	5 cut(s)	158, 189, 265, 413, 803
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	3 cut(s)	302, 400, 724
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	460, 697
TaiI	ACGT	2 cut(s)	183, 396
TaqI	TCGA	4 cut(s)	76, 475, 599, 675
TasI	AATT	5 cut(s)	105, 439, 524, 646, 877
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	2 cut(s)	463, 702
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	2 cut(s)	217, 700
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	4 cut(s)	547, 591, 609, 840
TspGWI	ACGGA	2 cut(s)	201, 357
TspRI	CASTG	2 cut(s)	463, 702
VpaK11BI	GGWCC	3 cut(s)	426, 542, 562
VspI	ATTAAT	1 cut(s)	492
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.