Rh3AG101100

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008799
Physical Location & Seq
Reverse (-)
8404858 .. 8407810
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG101100.1

Sequence Viewer

Length: 507 bp
ATGGCGGGAATGGCAGCGACCTTCAGTGTCTCGTCAGCTTCCCCAATCCTCAGCCGTCCATCACCGCTATCGTCTCTTTCCTTCTCATCCAAGCCGTTCATTTTGCCAATGCGGAGTCTCAACCGAGCAGCCCTGAGTCACAGATTTCCAAGGATAATGGCGTTTTCAAGCAATGATATTAAGGTGGGTTCCAACATTGAAGTTGACGGAGCTCCATGGCGAGTAATAGAGTTTCTTCATGTGAAACCTGGGAAAGGGGCTGCGTTTGTAAGGACCAAAATGCGCAATTATCTAACGGGAAACACTGTTGAGAAAACATTCCGGGCAGGAAGTACGATAAATGAGGCAGCTATCTACAAGGAAACCAAGCAATTCACATACAAAGATGGTCCCCAGTTTGTCTTCATGGACCTGGTATGCTTCTGTAGACCTTTTAATTGTAACATTAAAATTGGGTTTCCTTCATATGGACTTTTAGACTTCCTCTTCTCAAGGAAGCTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

10.12

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFP_N PF08207 56 - 112 1.4e-26 Elongation factor P (EF-P) KOW-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AccI GTMKAC 1 cut(s) 427
AciI CCGC 3 cut(s) 5, 65, 112
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 254, 467
AgsI TTSAA 2 cut(s) 168, 200
AjnI CCWGG 2 cut(s) 247, 411
AluBI AGCT 4 cut(s) 38, 212, 350, 499
AluI AGCT 4 cut(s) 38, 212, 350, 499
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 3 cut(s) 34, 78, 122
ApeKI GCWGC 4 cut(s) 14, 128, 260, 347
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 3 cut(s) 273, 389, 409
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 54
AvaII GGWCC 3 cut(s) 273, 389, 409
BanII GRGCYC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 26, 140, 247, 359
BccI CCATC 2 cut(s) 67, 380
BceAI ACGGC 2 cut(s) 39, 79
BciT130I CCWGG 2 cut(s) 249, 413
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 3 cut(s) 34, 78, 122
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 4 cut(s) 15, 129, 261, 348
BlsI GCNGC 4 cut(s) 16, 130, 262, 349
Bme1390I CCNGG 3 cut(s) 249, 323, 413
Bme18I GGWCC 3 cut(s) 273, 389, 409
BmgT120I GGNCC 3 cut(s) 273, 389, 409
BmiI GGNNCC 2 cut(s) 190, 391
BmrFI CCNGG 3 cut(s) 249, 323, 413
BmrI ACTGGG 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 149, 215, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 467
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 249, 413
BseDI CCNNGG 3 cut(s) 149, 215, 248
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 254, 467
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 64, 125
BseNI ACTGG 1 cut(s) 394
BseXI GCAGC 4 cut(s) 26, 140, 247, 359
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 254, 467
BsmAI GTCTC 3 cut(s) 34, 78, 122
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 3 cut(s) 5, 65, 112
BspCNI CTCAG 2 cut(s) 63, 126
BspLI GGNNCC 2 cut(s) 190, 391
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 3 cut(s) 149, 215, 248
BssT1I CCWWGG 2 cut(s) 149, 215
Bst2UI CCWGG 2 cut(s) 249, 413
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 50, 134
BstDSI CCRYGG 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 285
BstMAI GTCTC 3 cut(s) 34, 78, 122
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 249, 413
BstSCI CCNGG 3 cut(s) 247, 321, 411
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 26, 140, 247, 359
BstV2I GAAGAC 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 31, 303
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 3 cut(s) 273, 389, 409
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 333
CviAII CATG 3 cut(s) 216, 239, 406
CviJI RGCY 8 cut(s) 38, 54, 94, 131, 212, 260, 350, 499
CviKI_1 RGCY 8 cut(s) 38, 54, 94, 131, 212, 260, 350, 499
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 50, 134
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Ecl136II GAGCTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 149, 215
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 273, 389, 409
Eco53kI GAGCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 247, 411
EcoT14I CCWWGG 2 cut(s) 149, 215
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 2 cut(s) 149, 215
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 3 cut(s) 219, 242, 409
FaiI YATR 7 cut(s) 217, 240, 379, 407, 418, 466, 468
FaqI GGGAC 1 cut(s) 375
FatI CATG 3 cut(s) 215, 238, 405
FauNDI CATATG 1 cut(s) 466
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 15, 129, 261, 348
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 4 cut(s) 15, 129, 261, 348
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 1 cut(s) 284
GluI GCNGC 4 cut(s) 15, 129, 261, 348
HapII CCGG 1 cut(s) 322
HhaI GCGC 1 cut(s) 285
Hin1II CATG 3 cut(s) 219, 242, 409
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 115, 136
HpaII CCGG 1 cut(s) 322
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 205, 428
Hpy8I GTNNAC 2 cut(s) 205, 428
HpyAV CCTTC 3 cut(s) 31, 91, 471
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 50, 134
Hsp92II CATG 3 cut(s) 219, 242, 409
HspAI GCGC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 209, 217
LpnPI CCDG 8 cut(s) 146, 234, 261, 312, 335, 398, 407, 425
Lsp1109I GCAGC 4 cut(s) 26, 140, 247, 359
MabI ACCWGGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 137, 440
MboII GAAGA 3 cut(s) 227, 394, 478
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 4 cut(s) 286, 371, 436, 450
MlyI GAGTC 2 cut(s) 124, 145
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 3 cut(s) 59, 337, 494
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 3 cut(s) 180, 435, 447
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 3 cut(s) 249, 323, 413
MvaI CCWGG 2 cut(s) 249, 413
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 323
NcoI CCATGG 1 cut(s) 215
NdeI CATATG 1 cut(s) 466
NlaIII CATG 3 cut(s) 219, 242, 409
NlaIV GGNNCC 2 cut(s) 190, 391
NmuCI GTSAC 1 cut(s) 137
NsbI TGCGCA 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 4 cut(s) 16, 130, 262, 349
PleI GAGTC 2 cut(s) 123, 144
PpsI GAGTC 2 cut(s) 123, 144
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 247, 411
PspGI CCWGG 2 cut(s) 247, 411
PspN4I GGNNCC 2 cut(s) 190, 391
PspPI GGNCC 3 cut(s) 273, 389, 409
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 3 cut(s) 180, 435, 447
SatI GCNGC 4 cut(s) 15, 129, 261, 348
Sau96I GGNCC 3 cut(s) 273, 389, 409
SchI GAGTC 2 cut(s) 124, 145
ScrFI CCNGG 3 cut(s) 249, 323, 413
SduI GDGCHC 1 cut(s) 214
SetI ASST 9 cut(s) 23, 40, 186, 214, 250, 352, 414, 433, 501
SexAI ACCWGGT 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 3 cut(s) 273, 389, 409
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 4 cut(s) 286, 371, 436, 450
SsiI CCGC 3 cut(s) 5, 65, 112
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 247, 321, 411
StyI CCWWGG 2 cut(s) 149, 215
TaaI ACNGT 1 cut(s) 307
TasI AATT 4 cut(s) 286, 371, 436, 450
Tru1I TTAA 3 cut(s) 180, 435, 447
Tru9I TTAA 3 cut(s) 180, 435, 447
TscAI CASTG 2 cut(s) 31, 310
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 4 cut(s) 14, 128, 260, 347
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 88, 227, 394, 453
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 31, 310
VpaK11BI GGWCC 3 cut(s) 273, 389, 409
XagI CCTNNNNNAGG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.