Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008799

Physical Location & Seq

Genomic Coordinates Forward (+)

40914903 .. 40917902

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGGAATGGCAGCGACCTTCAGTGTCTCGTCAGCTTCCCCAATCCTCAGCCGTCCATCACCGCTATCGTCTCTTTCCTTCTCATCCAAGCCGTTCATTTTGCCAATGCGGAGTCTCAACCGAGCAGCCCTGAGTCACAGATTTCCAAGGATAATGGCGTTTTCAAGCAATGATATTAAGGTGGGTTCCAACATTGAAGTTGACGGAGCTCCATGGCGAGTAATAGAGTTTCTTCATGTGAAACCTGGGAAAGGGGCTGCGTTTGTAAGAACCAAAATGCGCAATTATCTGACGGGAAACACTGTTGAGAAAACATTCCGGGCAGGAAGTACGATAAATGAGGCAGCTATCTACAAGGAAACCAAGCAATTCACATACAAGGATGGTCCCCAGTTTGTCTTCATGGACCTGCTTTTCGATGTTGAAGTCCCCATCACAGCGAAGCTGACTGTGGTCGATGTTGATCCTGGACTGAAAGGTGACACTGCTCAAGCTAAATGCCCATCAATCCATGACCTGTCTGACATGGACAGTGGTGGTGGATCGAAGCCAGCTACCCTTGACACTGGTGCTGTTGTCTTTGTCCCTTTGTTCATAAATATAGGTGATGAAATATTGGTAGATACTAGAACCGGGCAGTACATGAATCGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFP EFP_N Elong-fact-P_C

Protein Analysis

219

Amino Acids

23.74

Weight (kDa)

8.99

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFP_N	PF08207	56 - 112	2.3e-26	Elongation factor P (EF-P) KOW-like domain
Elong-fact-P_C	PF09285	180 - 218	3.2e-16	Elongation factor P, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08740
fragaria_vesca	FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890 FvH4_6g09890
malus_domestica	MD12G1188200.v1.1
prunus_persica	Prupe.6G293500_v2.0.a1 Prupe.6G293500_v2.0.a1
pyrus_communis	pycom12g17590
rosa_chinensis	RchiOBHm_Chr3g0460491
rosa_laevigata	RLG00000025001 RLG00000025007
rosa_multiflora	Rmu_sc0004267.1_g000006 Rmu_sc0030082.1_g000003
rosa_roxburghii	Rroxscaffold_6G00419440
rosa_rugosa	Rorug03G0043000
rosa_samantha	Rh3AG101100 Rh3BG105100 Rh3CG106900 Rh3DG106400
rosa_wichuraiana	Rw3G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	420
AciI	CCGC	3 cut(s)	5, 65, 112
AclWI	GGATC	2 cut(s)	461, 553
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	334, 644
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	168, 200, 428
AjnI	CCWGG	2 cut(s)	247, 469
AluBI	AGCT	6 cut(s)	38, 212, 350, 448, 497, 557
AluI	AGCT	6 cut(s)	38, 212, 350, 448, 497, 557
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	34, 78, 122
AlwI	GGATC	2 cut(s)	461, 553
ApeKI	GCWGC	4 cut(s)	14, 128, 260, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	389, 409
AsuC2I	CCSGG	2 cut(s)	323, 637
AsuHPI	GGTGA	3 cut(s)	54, 494, 620
AvaII	GGWCC	2 cut(s)	389, 409
BanII	GRGCYC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	26, 140, 247, 359
BccI	CCATC	4 cut(s)	67, 380, 443, 514
BceAI	ACGGC	2 cut(s)	39, 79
BciT130I	CCWGG	2 cut(s)	249, 471
BcnI	CCSGG	2 cut(s)	323, 637
BcoDI	GTCTC	3 cut(s)	34, 78, 122
BfaI	CTAG	1 cut(s)	630
BfuAI	ACCTGC	1 cut(s)	420
BisI	GCNGC	4 cut(s)	15, 129, 261, 348
BlsI	GCNGC	4 cut(s)	16, 130, 262, 349
Bme1390I	CCNGG	4 cut(s)	249, 323, 471, 637
Bme18I	GGWCC	2 cut(s)	389, 409
BmgT120I	GGNCC	2 cut(s)	389, 409
BmiI	GGNNCC	2 cut(s)	190, 391
BmrFI	CCNGG	4 cut(s)	249, 323, 471, 637
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BoxI	GACNNNNGTC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	2 cut(s)	323, 637
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	149, 215, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	394, 574
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	249, 471
BseDI	CCNNGG	3 cut(s)	149, 215, 248
BseGI	GGATG	2 cut(s)	86, 391
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	64, 125
BseNI	ACTGG	2 cut(s)	394, 574
BseXI	GCAGC	4 cut(s)	26, 140, 247, 359
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	322, 636
BslFI	GGGAC	3 cut(s)	375, 416, 572
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	3 cut(s)	34, 78, 122
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	375, 416, 572
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	466, 545
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	3 cut(s)	5, 65, 112
BspCNI	CTCAG	2 cut(s)	63, 126
BspLI	GGNNCC	2 cut(s)	190, 391
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	461, 553
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	394, 574
BssECI	CCNNGG	3 cut(s)	149, 215, 248
BssMI	GATC	2 cut(s)	466, 545
BssT1I	CCWWGG	2 cut(s)	149, 215
Bst2UI	CCWGG	2 cut(s)	249, 471
Bst4CI	ACNGT	3 cut(s)	307, 454, 536
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	2 cut(s)	50, 134
BstDSI	CCRYGG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	86, 391
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	469, 548
BstMAI	GTCTC	3 cut(s)	34, 78, 122
BstMBI	GATC	2 cut(s)	466, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	249, 471
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	247, 321, 469, 635
BstV1I	GCAGC	4 cut(s)	26, 140, 247, 359
BstV2I	GAAGAC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	86, 391
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	5 cut(s)	31, 303, 486, 541, 567
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	389, 409
Csp6I	GTAC	2 cut(s)	333, 643
CviAII	CATG	6 cut(s)	216, 239, 406, 515, 529, 646
CviQI	GTAC	2 cut(s)	333, 643
DdeI	CTNAG	2 cut(s)	50, 134
DpnI	GATC	2 cut(s)	468, 547
DpnII	GATC	2 cut(s)	466, 545
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	149, 215
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	389, 409
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	247, 469
EcoT14I	CCWWGG	2 cut(s)	149, 215
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	2 cut(s)	149, 215
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	6 cut(s)	219, 242, 409, 518, 532, 649
FaqI	GGGAC	3 cut(s)	375, 416, 572
FatI	CATG	6 cut(s)	215, 238, 405, 514, 528, 645
Fnu4HI	GCNGC	4 cut(s)	15, 129, 261, 348
FokI	GGATG	2 cut(s)	73, 398
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	15, 129, 261, 348
FspBI	CTAG	1 cut(s)	630
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	15, 129, 261, 348
HapII	CCGG	2 cut(s)	322, 636
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	6 cut(s)	219, 242, 409, 518, 532, 649
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	115, 136, 649
HpaII	CCGG	2 cut(s)	322, 636
HphI	GGTGA	3 cut(s)	54, 494, 620
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	294, 526
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	31, 91
HpyCH4III	ACNGT	3 cut(s)	307, 454, 536
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	50, 134
Hsp92II	CATG	6 cut(s)	219, 242, 409, 518, 532, 649
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	466, 545
LmnI	GCTCC	2 cut(s)	209, 217
Lsp1109I	GCAGC	4 cut(s)	26, 140, 247, 359
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	137, 482
MalI	GATC	2 cut(s)	468, 547
MboI	GATC	2 cut(s)	466, 545
MboII	GAAGA	2 cut(s)	227, 394
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	286, 371
MlyI	GAGTC	2 cut(s)	124, 145
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	59, 337
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	180
MspI	CCGG	2 cut(s)	322, 636
MspR9I	CCNGG	4 cut(s)	249, 323, 471, 637
MvaI	CCWGG	2 cut(s)	249, 471
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	323, 637
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	466, 545
NlaIII	CATG	6 cut(s)	219, 242, 409, 518, 532, 649
NlaIV	GGNNCC	2 cut(s)	190, 391
NmuCI	GTSAC	2 cut(s)	137, 482
NsbI	TGCGCA	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	16, 130, 262, 349
PleI	GAGTC	2 cut(s)	123, 144
PpsI	GAGTC	2 cut(s)	123, 144
PshAI	GACNNNNGTC	1 cut(s)	455
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	247, 469
PspGI	CCWGG	2 cut(s)	247, 469
PspN4I	GGNNCC	2 cut(s)	190, 391
PspPI	GGNCC	2 cut(s)	389, 409
RsaI	GTAC	2 cut(s)	334, 644
RsaNI	GTAC	2 cut(s)	333, 643
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	15, 129, 261, 348
Sau3AI	GATC	2 cut(s)	466, 545
Sau96I	GGNCC	2 cut(s)	389, 409
SchI	GAGTC	2 cut(s)	124, 145
ScrFI	CCNGG	4 cut(s)	249, 323, 471, 637
SduI	GDGCHC	1 cut(s)	214
SinI	GGWCC	2 cut(s)	389, 409
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	2 cut(s)	286, 371
SsiI	CCGC	3 cut(s)	5, 65, 112
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	4 cut(s)	247, 321, 469, 635
StyI	CCWWGG	2 cut(s)	149, 215
TaaI	ACNGT	3 cut(s)	307, 454, 536
TaqI	TCGA	3 cut(s)	420, 459, 548
TasI	AATT	2 cut(s)	286, 371
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	5 cut(s)	31, 310, 493, 541, 574
TseFI	GTSAC	2 cut(s)	137, 482
TseI	GCWGC	4 cut(s)	14, 128, 260, 347
Tsp45I	GTSAC	2 cut(s)	137, 482
TspDTI	ATGAA	5 cut(s)	88, 227, 394, 586, 627
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	5 cut(s)	31, 310, 493, 541, 574
VpaK11BI	GGWCC	2 cut(s)	389, 409
XagI	CCTNNNNNAGG	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.