FvH4_6g09890

Elongation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008799
Physical Location & Seq
Reverse (-)
5877269 .. 5880324
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09890.t3

Sequence Viewer

Length: 723 bp
ATGGCGGGAATGGCAGCGAGCTTCAGTATCTCGTCAGCTTCCCCAATCCTCAGCCGTCCATCACCGCTATCCTCTCTCTCGTTCTCATCCAAGTCGTTCATTTTGCCAATGCGGAGTCTGAACCGAGCCCCTTTGAGTCACAGATTTCCAAGGATAATGGCGTTTTCTAGCAACGATATTAAGGTGGGTTCCAACATTGAAGTTGACGGAGCTCCTTGGCGAGTTATAGAGTTTCTTCATGTGAAACCTGGGAAAGGGGCTGCATTTGTAAGGACCAAAATGCGAAATTATCTAACAGGAAACACTGTTGAGAAGACATTTCGGGCAGGAAGTACGATGAGTGAGGCAGCTATCTACAAGGAAACCAAGCAATTCACATACAAAGATGGTCCCCAATATGTTTTCATGGACCTGACCACATTTGAAGAAACTCGTGTGAATGAATCTCAAATTGGGGCGGAAAAAACAAAATGGCTGAAAGAGGGAATGGACTGCAATTTGCTCCTGTGGAATGATAGACTTTTCGATGTTGAAATCCCCATCACAGCGAAGCTTACTGTGGTCGATGTTGATCCTGGACTGAAAGGTGACACAGCTCAAGGTGGTGGAACAAAGCCAGCTACCCTTGACACTGGTGCTGTTGTCTTTGTCCCATTGTTTGTAAATGTAGGTGATGAAATTTTGGTGGATACCAGAACCGGGCAGTACATGAATCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFP EFP_N Elong-fact-P_C

Protein Analysis

241

Amino Acids

26.4

Weight (kDa)

8.92

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFP_N PF08207 56 - 111 1e-26 Elongation factor P (EF-P) KOW-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 65, 112, 458
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 2 cut(s) 334, 707
AfiI CCNNNNNNNGG 2 cut(s) 254, 699
AgsI TTSAA 3 cut(s) 200, 425, 533
AjnI CCWGG 2 cut(s) 247, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 435, 467
AluBI AGCT 7 cut(s) 21, 38, 212, 350, 553, 596, 620
AluI AGCT 7 cut(s) 21, 38, 212, 350, 553, 596, 620
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 1 cut(s) 566
ApeKI GCWGC 3 cut(s) 14, 260, 347
ApoI RAATTY 1 cut(s) 678
AspS9I GGNCC 3 cut(s) 273, 389, 409
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 3 cut(s) 54, 599, 683
AvaII GGWCC 3 cut(s) 273, 389, 409
BanII GRGCYC 2 cut(s) 130, 214
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 26, 247, 359
BccI CCATC 3 cut(s) 67, 380, 548
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 249, 576
BciVI GTATCC 1 cut(s) 682
BcnI CCSGG 1 cut(s) 700
BfaI CTAG 1 cut(s) 168
BfuI GTATCC 1 cut(s) 682
BisI GCNGC 3 cut(s) 15, 261, 348
BlsI GCNGC 3 cut(s) 16, 262, 349
Bme1390I CCNGG 3 cut(s) 249, 576, 700
Bme18I GGWCC 3 cut(s) 273, 389, 409
BmgT120I GGNCC 3 cut(s) 273, 389, 409
BmiI GGNNCC 2 cut(s) 190, 391
BmrFI CCNGG 3 cut(s) 249, 576, 700
BpiI GAAGAC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 700
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 149, 215, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 699
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 2 cut(s) 249, 576
BseDI CCNNGG 3 cut(s) 149, 215, 248
BseGI GGATG 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 2 cut(s) 254, 699
BseMII CTCAG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 637
BseXI GCAGC 3 cut(s) 26, 247, 359
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 699
BslFI GGGAC 2 cut(s) 375, 635
BslI CCNNNNNNNGG 2 cut(s) 254, 699
BsmFI GGGAC 2 cut(s) 375, 635
Bsp1286I GDGCHC 2 cut(s) 130, 214
Bsp143I GATC 1 cut(s) 571
BspACI CCGC 4 cut(s) 5, 65, 112, 458
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 190, 391
BspPI GGATC 1 cut(s) 566
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 149, 215, 248
BssMI GATC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 432
BssT1I CCWWGG 2 cut(s) 149, 215
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 249, 576
Bst4CI ACNGT 2 cut(s) 307, 559
BstC8I GCNNGC 2 cut(s) 19, 618
BstDEI CTNAG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 574
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 249, 576
BstSCI CCNGG 3 cut(s) 247, 574, 698
BstV1I GCAGC 3 cut(s) 26, 247, 359
BstV2I GAAGAC 1 cut(s) 320
BsuI GTATCC 1 cut(s) 682
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 303, 630
Cac8I GCNNGC 2 cut(s) 19, 618
Cfr13I GGNCC 3 cut(s) 273, 389, 409
Csp6I GTAC 2 cut(s) 333, 706
CviAII CATG 3 cut(s) 239, 406, 709
CviQI GTAC 2 cut(s) 333, 706
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
EciI GGCGGA 1 cut(s) 473
Ecl136II GAGCTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 149, 215
Eco24I GRGCYC 2 cut(s) 130, 214
Eco47I GGWCC 3 cut(s) 273, 389, 409
Eco53kI GAGCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 247, 574
EcoT14I CCWWGG 2 cut(s) 149, 215
EcoT38I GRGCYC 2 cut(s) 130, 214
ErhI CCWWGG 2 cut(s) 149, 215
FaeI CATG 3 cut(s) 242, 409, 712
FaiI YATR 7 cut(s) 227, 240, 379, 399, 407, 710, 721
FaqI GGGAC 2 cut(s) 375, 635
FatI CATG 3 cut(s) 238, 405, 708
Fnu4HI GCNGC 3 cut(s) 15, 261, 348
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 2 cut(s) 130, 214
Fsp4HI GCNGC 3 cut(s) 15, 261, 348
FspBI CTAG 1 cut(s) 168
GluI GCNGC 3 cut(s) 15, 261, 348
HapII CCGG 1 cut(s) 699
Hin1II CATG 3 cut(s) 242, 409, 712
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 4 cut(s) 115, 136, 443, 712
HpaII CCGG 1 cut(s) 699
HphI GGTGA 3 cut(s) 54, 599, 683
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 2 cut(s) 307, 559
HpyCH4V TGCA 3 cut(s) 263, 495, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 3 cut(s) 242, 409, 712
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 3 cut(s) 209, 217, 507
Lsp1109I GCAGC 3 cut(s) 26, 247, 359
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 137, 587
MalI GATC 1 cut(s) 573
MboI GATC 1 cut(s) 571
MboII GAAGA 3 cut(s) 227, 325, 437
MhlI GDGCHC 2 cut(s) 130, 214
MluCI AATT 5 cut(s) 286, 371, 450, 496, 678
MlyI GAGTC 2 cut(s) 124, 145
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 59, 82, 337, 475
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 699
MspR9I CCNGG 3 cut(s) 249, 576, 700
MvaI CCWGG 2 cut(s) 249, 576
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 700
NdeII GATC 1 cut(s) 571
NlaIII CATG 3 cut(s) 242, 409, 712
NlaIV GGNNCC 2 cut(s) 190, 391
NmuCI GTSAC 2 cut(s) 137, 587
PfeI GAWTC 2 cut(s) 443, 712
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 3 cut(s) 16, 262, 349
PleI GAGTC 2 cut(s) 123, 144
PpsI GAGTC 2 cut(s) 123, 144
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 247, 574
PspGI CCWGG 2 cut(s) 247, 574
PspN4I GGNNCC 2 cut(s) 190, 391
PspPI GGNCC 3 cut(s) 273, 389, 409
RsaI GTAC 2 cut(s) 334, 707
RsaNI GTAC 2 cut(s) 333, 706
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 15, 261, 348
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 3 cut(s) 273, 389, 409
SchI GAGTC 2 cut(s) 124, 145
ScrFI CCNGG 3 cut(s) 249, 576, 700
SduI GDGCHC 2 cut(s) 130, 214
SinI GGWCC 3 cut(s) 273, 389, 409
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 5 cut(s) 286, 371, 450, 496, 678
SsiI CCGC 4 cut(s) 5, 65, 112, 458
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 247, 574, 698
StyI CCWWGG 2 cut(s) 149, 215
TaaI ACNGT 2 cut(s) 307, 559
TaqI TCGA 2 cut(s) 525, 564
TasI AATT 5 cut(s) 286, 371, 450, 496, 678
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 443, 712
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 310, 637
TseFI GTSAC 2 cut(s) 137, 587
TseI GCWGC 3 cut(s) 14, 260, 347
Tsp45I GTSAC 2 cut(s) 137, 587
TspDTI ATGAA 5 cut(s) 88, 227, 394, 456, 690
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 310, 637
VpaK11BI GGWCC 3 cut(s) 273, 389, 409
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 678
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.