Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010990

Physical Location & Seq

Genomic Coordinates Reverse (-)

2787953 .. 2793547

Gene Structure 5595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGTTGCTACGATGGACTTAAATGCTTCACCCCAACCCGAAGAAGATGACGAACCGTATGTGAGACATCTAGAAGACTATTCTTCTCGGGATGAACGGATAGAGTCTGCTGTTGAAATCGCTAGACGGGAACGTGAAGAGAGAAAGAAACGAATGAGATATGACAAGCCAACACATAACTCTCAGCCAGTTTTCCGTGATCAATATTACCAGAATCGAAATACTAAAGCTTATGATAGATACAAGATCCCTCAAGGTTGGCTAGACTGCCCTCCTTCTGGGAATGAGATAGGATTCCTCGTTCCTTCAAAAGTTCCCCTGAATGAATCTTACAATAATCATGTACCTCCTGGAAGTAGATACTCTTTTAAACAGGTGATCCATAACCAGAGGATAGCTGGGAGAAAGCTTGGTCTGGTGATCGATTTGACAAACACAACTCGTTACTATTCTACGACAGACTTGAAGAAAGAAGGCATTAAGCATGTGAAGATTGCATGCAAGGGTCGTGATGCAGTGCCAGATAATGTGTCTGTCAACGCATTTGTCAATGAGGTTAATCAGTTTGTCCTAAATCTAAAACACTCGAAAAAGTATATTCTCGTCCATTGTACACATGGACATAATCGGACAGGGTTCATGATAGTTCATTATCTCATGCGATCTGGGCCAATGAATGTTACACAGGCTTTGAAAATCTTTTCCGATGCCCGCCCACCTGGGATCTATAAACCAGATTATATTGATGCTTTATACTCGTTTTATCACGAAATAAAACCTGAAAGCGTCATTTGCCCATCAACTCCTGAATGGAAGAGGTCTACTGAGCTTGATTTAAATGGTGAAGCTTTGCCAGATGATGAAGATGATGATGGCGGTCCTGCTGGTCCTGTGCAAGGTTTCCAGGAGGAAAGTCATCAGGTGGATGTCAAGATGTCAAATGATGACGTTCTAGGTGATGAAATACCCCCAGACCAGGAGGAAGGTTACCGCCAATTCTTTTATAGGATGCTATCACTGAATATTGGGGGAAGAGGATGTTCACAATTTCCAGGTTCACACCCTGTCTCCTTAAACAGGGAAAATTTGCAACTCTTGAGGCAGCGGTACTATTATGCAACATGGAAAGCTGATGGAACGCGATATATGATGCTGCTAACCACCGATGGATGTTACATAGTAGATAGAAGCTTTAGATTCCGGAGGGTACAGATGCGGTTCCCCTTTAGGCACCCAACTGAAGGCATATCTGATAAAGTGCACCATTTCACATTACTTGATGGAGAAATGATAATCGATACCTTGCCAGATAAACAAAAGCAGGAGAGGAGATACCTAATCTATGACATGGTAGCAATCAACGGCCAATCAGTTGTAGAGGTTGGAATTGTCATTATTTATTTATGTAATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

471

Amino Acids

54.58

Weight (kDa)

6.48

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	129 - 255	7e-17	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	132 - 223	5.3e-07	Polymorphic toxin system, DSP-PTPase phosphatase
mRNA_cap_enzyme	PF01331	354 - 460	9.4e-44	mRNA capping enzyme, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09100 AT3G09100
fragaria_vesca	FvH4_6g12120 FvH4_6g12120 FvH4_6g12120
malus_domestica	MD04G1146600.v1.1 MD12G1159800.v1.1
prunus_persica	Prupe.6G270400_v2.0.a1
pyrus_communis	pycom04g13230 pycom12g15160
rosa_chinensis	RchiOBHm_Chr3g0463921
rosa_laevigata	RLG00000024736
rosa_multiflora	Rmu_sc0000517.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416140
rosa_rugosa	Rorug03G0069200
rosa_samantha	Rh3AG126200 Rh3BG130200 Rh3CG132700 Rh3DG131400
rosa_wichuraiana	Rw3G010650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1230
AccI	GTMKAC	1 cut(s)	821
AccII	CGCG	1 cut(s)	1141
AccIII	TCCGGA	1 cut(s)	1200
AciI	CCGC	5 cut(s)	712, 876, 991, 1105, 1216
AclWI	GGATC	3 cut(s)	241, 373, 731
AcoI	YGGCCR	1 cut(s)	1363
AcsI	RAATTY	1 cut(s)	1084
AcuI	CTGAAG	1 cut(s)	1260
AfaI	GTAC	4 cut(s)	345, 613, 1109, 1209
AfiI	CCNNNNNNNGG	5 cut(s)	278, 896, 976, 1077, 1241
AgsI	TTSAA	4 cut(s)	116, 309, 466, 694
AjnI	CCWGG	5 cut(s)	349, 718, 903, 975, 1051
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	7 cut(s)	230, 398, 409, 829, 848, 1130, 1191
AluI	AGCT	7 cut(s)	230, 398, 409, 829, 848, 1130, 1191
Alw21I	GWGCWC	1 cut(s)	1263
Alw26I	GTCTC	2 cut(s)	58, 1072
Alw44I	GTGCAC	1 cut(s)	1259
AlwI	GGATC	3 cut(s)	241, 373, 731
Ama87I	CYCGRG	1 cut(s)	87
Aor13HI	TCCGGA	1 cut(s)	1200
AoxI	GGCC	2 cut(s)	668, 1363
ApaLI	GTGCAC	1 cut(s)	1259
ApeKI	GCWGC	2 cut(s)	1102, 1153
ApoI	RAATTY	1 cut(s)	1084
AspS9I	GGNCC	3 cut(s)	668, 878, 887
AsuHPI	GGTGA	5 cut(s)	21, 388, 430, 854, 968
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	878, 887
BaeGI	GKGCMC	1 cut(s)	1263
BanI	GGYRCC	1 cut(s)	1230
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	1263
BbvI	GCAGC	2 cut(s)	1114, 1140
BccI	CCATC	6 cut(s)	7, 805, 866, 1127, 1160, 1274
BceAI	ACGGC	1 cut(s)	1378
BciT130I	CCWGG	5 cut(s)	351, 720, 905, 977, 1053
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	58, 1072
BfaI	CTAG	4 cut(s)	71, 123, 263, 953
BisI	GCNGC	2 cut(s)	1103, 1154
BlsI	GCNGC	2 cut(s)	1104, 1155
Bme1390I	CCNGG	5 cut(s)	351, 720, 905, 977, 1053
Bme18I	GGWCC	2 cut(s)	878, 887
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	668, 878, 887
BmiI	GGNNCC	2 cut(s)	1220, 1232
BmrFI	CCNGG	5 cut(s)	351, 720, 905, 977, 1053
BmsI	GCATC	6 cut(s)	502, 697, 736, 999, 1140, 1203
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	237, 1117
Bsa29I	ATCGAT	2 cut(s)	423, 1296
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	1200
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bsc4I	CCNNNNNNNGG	5 cut(s)	278, 896, 976, 1077, 1241
Bse1I	ACTGG	1 cut(s)	188
BseAI	TCCGGA	1 cut(s)	1200
BseBI	CCWGG	5 cut(s)	351, 720, 905, 977, 1053
BseCI	ATCGAT	2 cut(s)	423, 1296
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	5 cut(s)	97, 931, 1014, 1043, 1175
BseLI	CCNNNNNNNGG	5 cut(s)	278, 896, 976, 1077, 1241
BseMII	CTCAG	2 cut(s)	197, 816
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	1342
BseSI	GKGCMC	1 cut(s)	1263
BseXI	GCAGC	2 cut(s)	1114, 1140
BseYI	CCCAGC	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	1141
BshFI	GGCC	2 cut(s)	670, 1365
BshNI	GGYRCC	1 cut(s)	1230
BshVI	ATCGAT	2 cut(s)	423, 1296
BsiHKAI	GWGCWC	1 cut(s)	1263
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	1201
BslI	CCNNNNNNNGG	5 cut(s)	278, 896, 976, 1077, 1241
BsmAI	GTCTC	2 cut(s)	58, 1072
BsnI	GGCC	2 cut(s)	670, 1365
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	1263
Bsp13I	TCCGGA	1 cut(s)	1200
Bsp1407I	TGTACA	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
BspACI	CCGC	5 cut(s)	712, 876, 991, 1105, 1216
BspANI	GGCC	2 cut(s)	670, 1365
BspCNI	CTCAG	2 cut(s)	196, 817
BspDI	ATCGAT	2 cut(s)	423, 1296
BspEI	TCCGGA	1 cut(s)	1200
BspFNI	CGCG	1 cut(s)	1141
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	1220, 1232
BspPI	GGATC	3 cut(s)	241, 373, 731
BspT107I	GGYRCC	1 cut(s)	1230
BsrGI	TGTACA	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
Bst2UI	CCWGG	5 cut(s)	351, 720, 905, 977, 1053
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	3 cut(s)	132, 809, 1027
BstAUI	TGTACA	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	499, 712
BstDEI	CTNAG	2 cut(s)	183, 825
BstEII	GGTNACC	1 cut(s)	986
BstENI	CCTNNNNNAGG	2 cut(s)	894, 1075
BstF5I	GGATG	5 cut(s)	97, 931, 1014, 1043, 1175
BstFNI	CGCG	1 cut(s)	1141
BstKTI	GATC	6 cut(s)	202, 249, 381, 423, 665, 726
BstMAI	GTCTC	2 cut(s)	58, 1072
BstMBI	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	667, 792
BstNI	CCWGG	5 cut(s)	351, 720, 905, 977, 1053
BstNSI	RCATGY	2 cut(s)	488, 501
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	5 cut(s)	349, 718, 903, 975, 1051
BstSLI	GKGCMC	1 cut(s)	1263
BstUI	CGCG	1 cut(s)	1141
BstV1I	GCAGC	2 cut(s)	1114, 1140
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	246, 723
BstYI	RGATCY	2 cut(s)	246, 723
Bsu15I	ATCGAT	2 cut(s)	423, 1296
BsuRI	GGCC	2 cut(s)	670, 1365
BsuTUI	ATCGAT	2 cut(s)	423, 1296
BtsCI	GGATG	5 cut(s)	97, 931, 1014, 1043, 1175
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 1016
Cac8I	GCNNGC	2 cut(s)	499, 712
CciI	TCATGA	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	668, 878, 887
ClaI	ATCGAT	2 cut(s)	423, 1296
CseI	GACGC	1 cut(s)	775
Csp6I	GTAC	4 cut(s)	344, 612, 1108, 1208
CviAII	CATG	8 cut(s)	341, 485, 498, 617, 640, 658, 1122, 1348
CviQI	GTAC	4 cut(s)	344, 612, 1108, 1208
DdeI	CTNAG	2 cut(s)	183, 825
DpnI	GATC	6 cut(s)	201, 248, 380, 422, 664, 725
DpnII	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
DraI	TTTAAA	2 cut(s)	370, 837
EaeI	YGGCCR	1 cut(s)	1363
Eam1104I	CTCTTC	3 cut(s)	132, 809, 1027
EarI	CTCTTC	3 cut(s)	132, 809, 1027
Eco47I	GGWCC	2 cut(s)	878, 887
Eco57I	CTGAAG	1 cut(s)	1260
Eco88I	CYCGRG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	986
EcoNI	CCTNNNNNAGG	2 cut(s)	894, 1075
EcoO65I	GGTNACC	1 cut(s)	986
EcoRII	CCWGG	5 cut(s)	349, 718, 903, 975, 1051
FaeI	CATG	8 cut(s)	344, 488, 501, 620, 643, 661, 1125, 1351
FatI	CATG	8 cut(s)	340, 484, 497, 616, 639, 657, 1121, 1347
FauI	CCCGC	1 cut(s)	719
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	2 cut(s)	1103, 1154
FokI	GGATG	5 cut(s)	104, 938, 1021, 1050, 1182
Fsp4HI	GCNGC	2 cut(s)	1103, 1154
FspBI	CTAG	4 cut(s)	71, 123, 263, 953
GluI	GCNGC	2 cut(s)	1103, 1154
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	670, 1365
HapII	CCGG	1 cut(s)	1201
HgaI	GACGC	1 cut(s)	775
Hin1II	CATG	8 cut(s)	344, 488, 501, 620, 643, 661, 1125, 1351
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	4 cut(s)	228, 407, 846, 1189
HinfI	GANTC	5 cut(s)	104, 214, 294, 326, 1197
HpaII	CCGG	1 cut(s)	1201
HphI	GGTGA	5 cut(s)	21, 388, 430, 854, 968
Hpy166II	GTNNAC	6 cut(s)	538, 614, 822, 1043, 1058, 1261
Hpy188I	TCNGA	3 cut(s)	630, 706, 1252
Hpy188III	TCNNGA	9 cut(s)	71, 89, 509, 640, 767, 806, 931, 1096, 1201
Hpy8I	GTNNAC	6 cut(s)	538, 614, 822, 1043, 1058, 1261
HpyAV	CCTTC	5 cut(s)	285, 315, 467, 977, 1235
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	133, 948
HpyCH4V	TGCA	7 cut(s)	497, 501, 515, 895, 1090, 1118, 1261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	667, 792
HpyF3I	CTNAG	2 cut(s)	183, 825
HpySE526I	ACGT	2 cut(s)	133, 948
Hsp92II	CATG	8 cut(s)	344, 488, 501, 620, 643, 661, 1125, 1351
Kpn2I	TCCGGA	1 cut(s)	1200
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
Lsp1109I	GCAGC	2 cut(s)	1114, 1140
LweI	GCATC	6 cut(s)	502, 697, 736, 999, 1140, 1203
MaeI	CTAG	4 cut(s)	71, 123, 263, 953
MaeII	ACGT	2 cut(s)	133, 948
MaeIII	GTNAC	4 cut(s)	443, 679, 986, 1172
MalI	GATC	6 cut(s)	201, 248, 380, 422, 664, 725
MboI	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
MflI	RGATCY	2 cut(s)	246, 723
MhlI	GDGCHC	1 cut(s)	1263
MluCI	AATT	4 cut(s)	995, 1046, 1084, 1386
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	1363
MroI	TCCGGA	1 cut(s)	1200
MseI	TTAA	6 cut(s)	20, 369, 480, 558, 836, 1073
MspA1I	CMGCKG	1 cut(s)	1105
MspI	CCGG	1 cut(s)	1201
MspR9I	CCNGG	5 cut(s)	351, 720, 905, 977, 1053
MvaI	CCWGG	5 cut(s)	351, 720, 905, 977, 1053
MvnI	CGCG	1 cut(s)	1141
MwoI	GCNNNNNNNGC	2 cut(s)	667, 792
NdeII	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
NlaIII	CATG	8 cut(s)	344, 488, 501, 620, 643, 661, 1125, 1351
NlaIV	GGNNCC	2 cut(s)	1220, 1232
NspI	RCATGY	2 cut(s)	488, 501
PaeI	GCATGC	1 cut(s)	501
PagI	TCATGA	1 cut(s)	639
PfeI	GAWTC	4 cut(s)	214, 294, 326, 1197
PfoI	TCCNGGA	2 cut(s)	349, 903
PkrI	GCNGC	2 cut(s)	1104, 1155
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp6I	CCWGG	5 cut(s)	349, 718, 903, 975, 1051
PspEI	GGTNACC	1 cut(s)	986
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	5 cut(s)	349, 718, 903, 975, 1051
PspN4I	GGNNCC	2 cut(s)	1220, 1232
PspPI	GGNCC	3 cut(s)	668, 878, 887
PsuI	RGATCY	2 cut(s)	246, 723
RsaI	GTAC	4 cut(s)	345, 613, 1109, 1209
RsaNI	GTAC	4 cut(s)	344, 612, 1108, 1208
SaqAI	TTAA	6 cut(s)	20, 369, 480, 558, 836, 1073
SatI	GCNGC	2 cut(s)	1103, 1154
Sau3AI	GATC	6 cut(s)	199, 246, 378, 420, 662, 723
Sau96I	GGNCC	3 cut(s)	668, 878, 887
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	5 cut(s)	351, 720, 905, 977, 1053
SduI	GDGCHC	1 cut(s)	1263
SfaNI	GCATC	6 cut(s)	502, 697, 736, 999, 1140, 1203
SinI	GGWCC	2 cut(s)	878, 887
SmiI	ATTTAAAT	1 cut(s)	837
SmlI	CTYRAG	2 cut(s)	252, 1096
SmoI	CTYRAG	2 cut(s)	252, 1096
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	4 cut(s)	995, 1046, 1084, 1386
SsiI	CCGC	5 cut(s)	712, 876, 991, 1105, 1216
SspI	AATATT	2 cut(s)	206, 1024
SspMI	CTAG	4 cut(s)	71, 123, 263, 953
StyD4I	CCNGG	5 cut(s)	349, 718, 903, 975, 1051
SwaI	ATTTAAAT	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	136, 951
TaqI	TCGA	4 cut(s)	217, 423, 587, 1296
TasI	AATT	4 cut(s)	995, 1046, 1084, 1386
TatI	WGTACW	1 cut(s)	611
TfiI	GAWTC	4 cut(s)	214, 294, 326, 1197
Tru1I	TTAA	6 cut(s)	20, 369, 480, 558, 836, 1073
Tru9I	TTAA	6 cut(s)	20, 369, 480, 558, 836, 1073
TscAI	CASTG	2 cut(s)	522, 1023
TseI	GCWGC	2 cut(s)	1102, 1153
TspDTI	ATGAA	7 cut(s)	108, 339, 628, 638, 689, 876, 975
TspGWI	ACGGA	2 cut(s)	112, 185
TspRI	CASTG	2 cut(s)	522, 1023
VneI	GTGCAC	1 cut(s)	1259
VpaK11BI	GGWCC	2 cut(s)	878, 887
XagI	CCTNNNNNAGG	2 cut(s)	894, 1075
XapI	RAATTY	1 cut(s)	1084
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	488, 501
XcmI	CCANNNNNNNNNTGG	2 cut(s)	395, 614
XmiI	GTMKAC	1 cut(s)	821
XspI	CTAG	4 cut(s)	71, 123, 263, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.