Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010990

Physical Location & Seq

Genomic Coordinates Reverse (-)

10291303 .. 10298922

Gene Structure 7620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGATTGTTGCAATGGATTTGAATGCCTCGCCATTACCTGAAGATGATGAAGAGACTTTTGAAGAATACAATGCAAAGGATTACAGTGCACAGGACTACAGTGCACAGGAATATAGCGCGCCACAAGAACACGTAGAATCTGGAGTGGATATATTACGCCGGGAGCGTGAAGAAAGACGTAAGCGATTGAAACGAGACCGTCCAGATGATAGACCAGTGCCTGCATCTCAACCCCCTGCATATGAATCGTATCAAGCAAAATTTGCCAAGGTCGACACATCAAGGCTTCCTTCTGGTTGGTTGGATTGCCCATCATCTGGTCAAGAAATTTATTGCATGATACCTTCTAAGGTGCCGTTGTGTGAATCCTACAATGATTGTGTTCCTCCTGGTAGAAGATACTCATTTAAACAAGTCATCCATCAACAAAGAGTTTTGGGAAGAAAACTTGGTTTGGTGATTGATTTGACAAATACAACTCGTTACTATCAAACGACAGATTTGAAGAAAGAGGGTATTAAGCATATTAAGATTCCGTGCAAGGGACGGGATTCTGTACCTGACAACCCTTCCGTGAATCAGTTTGTATATGAGGTTATGCAATTCATGACCCGACAGAAACACACCAAGAAGTATATTCTTGTCCACTGTACTCATGGGCACAATCGCACAGGGTATATGATCATCCATTACCTAATGCGCACCTTACCAATTTCGGTCACTCAGGCCATAAAAACTTTTGCTGATGCACGCCCACCTGGAATCTATAAACCTGACTATATTGATGCATTGTACTCGTTCTATCACGAAAGGAAGCCTGAAATGGTTGTATGTCCATCAACTCCTGAATGGAAGAGATCCTCCGAATTTGATCTTAATGGTGAAGCAGTTGCAGACGATGATGATGATGGAGGTCCAGCTGCTCCTTCTCATGAGAATCAGGAAACGGATGGAGTAATGACAAATGATGATATCTTGGGGGATGAAATACCTCGCGATCAGCAAGAGGCAATGCGGCAGTTCTGCTATCAGTCCTTAAGCTGCCTCCTGGGAGGAAACGCACAATTTCCAGGGTCGCACCCAGTTTCTCTTAGCAGGGACAACTTACAGCTATTGAGGCAACGTTATTATTATGCTACATGGAAAGCTGATGGAACAAGATATATGATGTTAATAACTATGGATGGATGTTTCTTGATTGATAGGAGTTTTAATTTTAGGAGGGTACAAATGAGGTTTCCCTGCAAACACACAAATGATGTTTCAGCTGATAAGGTTCACCACTTCACGTTATTGGATGGGGAGATGGTAATTGATACTGTGCCAGATTCACAGAAGCAGGAGAGAAGATACCTTATCTATGATATGATGGCGATCAACCATGTTTCTCTCATAGAGCGGCCATTTTATGAGCGGTGGAAGATGCTTGAGAAAGAGGTCATAGAGCCTCGGAATCATGAGCGCCACAATATCTACCAAAGTAGGAATCCTTACTATAGATATGACTTAGAACCATTCAGGGTAAGGAGGAAGGACTTTTGGTTGCTCTCTACGGTTACCAAACTTTTGAAGGAATTCATTCCAAAGCTTTCACATGAGGCTGATGGTCTTATTTTTCAGGGCTGGGATGATCCATATGTTCCCCGTACACATGAAGGACTTCTAAAGTGGAAATATCCTGAAATGAACTCGGTGGATTTTCTGTTTGAGGTTGGTGAAGACGATCGACAACTGCTTTTTCTATACGAACATGGAAAGAAGAAACTAATGGAAGGAAATAGGGTTGCATTTAAAGATGGTTCAGACAGCTCCTTTTATTCAGGAAAAATAGTGGAATGTTCTTGGGATATGGAAGCAAATGTATGGGTCTGTATGCGCGTCAGGGTTGATAAATCCACTCCCAATGATTTCAATACCTACAGAAAGGTTATGAAAAGCATAAAGGATAATATTACGCAGGACGTCTTGTTGGACGAGATATATGAGATCATTCGTCTGCCTATGTATGCTGATAGGATACGGAATGACAGCAAAGCAGCCCAGCAGCATTTAGCACGGCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

688

Amino Acids

80.76

Weight (kDa)

6.34

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	148 - 268	4.9e-16	Dual specificity phosphatase, catalytic domain
mRNA_cap_enzyme	PF01331	360 - 558	8.5e-77	mRNA capping enzyme, catalytic domain
mRNA_cap_C	PF03919	595 - 657	2.2e-18	mRNA capping enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09100 AT3G09100
fragaria_vesca	FvH4_6g12120 FvH4_6g12120 FvH4_6g12120
malus_domestica	MD04G1146600.v1.1 MD12G1159800.v1.1
prunus_persica	Prupe.6G270400_v2.0.a1
pyrus_communis	pycom04g13230 pycom12g15160
rosa_chinensis	RchiOBHm_Chr3g0463921
rosa_laevigata	RLG00000024736
rosa_multiflora	Rmu_sc0000517.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416140
rosa_rugosa	Rorug03G0069200
rosa_samantha	Rh3AG126200 Rh3BG130200 Rh3CG132700 Rh3DG131400
rosa_wichuraiana	Rw3G010650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1965
Acc16I	TGCGCA	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	352
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccBSI	CCGCTC	2 cut(s)	1399, 1414
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	3 cut(s)	119, 996, 1878
AciI	CCGC	4 cut(s)	1015, 1399, 1414, 2059
AclI	AACGTT	1 cut(s)	1123
AclWI	GGATC	2 cut(s)	852, 1625
AcoI	YGGCCR	1 cut(s)	1400
AcsI	RAATTY	4 cut(s)	260, 327, 866, 1574
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	1962
AfaI	GTAC	5 cut(s)	558, 652, 794, 1227, 1648
AfiI	CCNNNNNNNGG	2 cut(s)	317, 542
AflII	CTTAAG	1 cut(s)	1036
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	6 cut(s)	22, 62, 190, 505, 1570, 1912
AjnI	CCWGG	4 cut(s)	388, 757, 1047, 1069
AluBI	AGCT	7 cut(s)	920, 1041, 1111, 1148, 1268, 1588, 1809
AluI	AGCT	7 cut(s)	920, 1041, 1111, 1148, 1268, 1588, 1809
Alw21I	GWGCWC	2 cut(s)	91, 106
Alw26I	GTCTC	2 cut(s)	47, 189
Alw44I	GTGCAC	2 cut(s)	87, 102
AlwI	GGATC	2 cut(s)	852, 1625
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	726, 1400
ApaLI	GTGCAC	2 cut(s)	87, 102
ApeKI	GCWGC	4 cut(s)	920, 1041, 2036, 2044
ApoI	RAATTY	4 cut(s)	260, 327, 866, 1574
Asp700I	GAANNNNTTC	3 cut(s)	1574, 1578, 1659
AspLEI	GCGC	5 cut(s)	119, 121, 702, 1464, 1878
AspS9I	GGNCC	1 cut(s)	914
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	469, 893, 1271, 1727
AvaII	GGWCC	1 cut(s)	914
BaeGI	GKGCMC	3 cut(s)	91, 106, 663
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	1725
Bbv12I	GWGCWC	2 cut(s)	91, 106
BbvI	GCAGC	4 cut(s)	907, 1028, 2048, 2056
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	4 cut(s)	228, 262, 777, 811
BciT130I	CCWGG	4 cut(s)	390, 759, 1049, 1071
BciVI	GTATCC	1 cut(s)	2010
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	47, 189
BfmI	CTRYAG	3 cut(s)	97, 1495, 1918
BfoI	RGCGCY	1 cut(s)	1465
BfrI	CTTAAG	1 cut(s)	1036
BfuI	GTATCC	1 cut(s)	2010
BisI	GCNGC	6 cut(s)	921, 1016, 1042, 1400, 2037, 2045
BlsI	GCNGC	6 cut(s)	922, 1017, 1043, 1401, 2038, 2046
Bme1390I	CCNGG	5 cut(s)	161, 390, 759, 1049, 1071
Bme18I	GGWCC	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	5 cut(s)	161, 390, 759, 1049, 1071
BmrI	ACTGGG	1 cut(s)	1076
BmsI	GCATC	4 cut(s)	233, 736, 775, 1413
BmuI	ACTGGG	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	1725
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	1448
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	1373
BsaHI	GRCGYC	1 cut(s)	1962
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	267, 1048, 1070, 1448
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 542
Bse1I	ACTGG	2 cut(s)	215, 1082
Bse3DI	GCAATG	2 cut(s)	18, 1017
Bse8I	GATNNNNATC	1 cut(s)	1373
BseBI	CCWGG	4 cut(s)	390, 759, 1049, 1071
BseDI	CCNNGG	4 cut(s)	267, 1048, 1070, 1448
BseGI	GGATG	8 cut(s)	417, 684, 955, 988, 1189, 1193, 1303, 1633
BseJI	GATNNNNATC	1 cut(s)	1373
BseLI	CCNNNNNNNGG	2 cut(s)	317, 542
BseMI	GCAATG	2 cut(s)	18, 1017
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	2 cut(s)	215, 1082
BsePI	GCGCGC	1 cut(s)	117
BseSI	GKGCMC	3 cut(s)	91, 106, 663
BseXI	GCAGC	4 cut(s)	907, 1028, 2048, 2056
BseYI	CCCAGC	2 cut(s)	1623, 2040
Bsh1236I	CGCG	3 cut(s)	119, 996, 1878
Bsh1285I	CGRYCG	1 cut(s)	1726
BshFI	GGCC	2 cut(s)	728, 1402
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	1726
BsiHKAI	GWGCWC	2 cut(s)	91, 106
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	558, 1112
BslI	CCNNNNNNNGG	2 cut(s)	317, 542
BsmAI	GTCTC	2 cut(s)	47, 189
BsmFI	GGGAC	2 cut(s)	558, 1112
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	728, 1402
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	3 cut(s)	91, 106, 663
Bsp143I	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
Bsp68I	TCGCGA	1 cut(s)	996
BspACI	CCGC	4 cut(s)	1015, 1399, 1414, 2059
BspANI	GGCC	2 cut(s)	728, 1402
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	3 cut(s)	119, 996, 1878
BspHI	TCATGA	3 cut(s)	606, 931, 1456
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	852, 1625
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	1036
BspTNI	GGTCTC	1 cut(s)	189
BsrBI	CCGCTC	2 cut(s)	1399, 1414
BsrDI	GCAATG	2 cut(s)	18, 1017
BsrI	ACTGG	2 cut(s)	215, 1082
BssECI	CCNNGG	4 cut(s)	267, 1048, 1070, 1448
BssHII	GCGCGC	1 cut(s)	117
BssMI	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
BssNI	GRCGYC	1 cut(s)	1962
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	4 cut(s)	390, 759, 1049, 1071
Bst4CI	ACNGT	6 cut(s)	86, 101, 200, 650, 1321, 1555
Bst6I	CTCTTC	2 cut(s)	45, 848
BstACI	GRCGYC	1 cut(s)	1962
BstAFI	CTTAAG	1 cut(s)	1036
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	119, 222, 751
BstDEI	CTNAG	4 cut(s)	348, 723, 1091, 1507
BstEII	GGTNACC	1 cut(s)	1555
BstF5I	GGATG	8 cut(s)	417, 684, 955, 988, 1189, 1193, 1303, 1633
BstFNI	CGCG	3 cut(s)	119, 996, 1878
BstH2I	RGCGCY	1 cut(s)	1465
BstHHI	GCGC	5 cut(s)	119, 121, 702, 1464, 1878
BstKTI	GATC	8 cut(s)	684, 860, 874, 1000, 1377, 1633, 1726, 1989
BstMAI	GTCTC	2 cut(s)	47, 189
BstMBI	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
BstMCI	CGRYCG	1 cut(s)	1726
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 1117
BstNI	CCWGG	4 cut(s)	390, 759, 1049, 1071
BstPI	GGTNACC	1 cut(s)	1555
BstSCI	CCNGG	5 cut(s)	159, 388, 757, 1047, 1069
BstSFI	CTRYAG	3 cut(s)	97, 1495, 1918
BstSLI	GKGCMC	3 cut(s)	91, 106, 663
BstUI	CGCG	3 cut(s)	119, 996, 1878
BstV1I	GCAGC	4 cut(s)	907, 1028, 2048, 2056
BstV2I	GAAGAC	1 cut(s)	1725
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuI	GTATCC	1 cut(s)	2010
BsuRI	GGCC	2 cut(s)	728, 1402
BtsCI	GGATG	8 cut(s)	417, 684, 955, 988, 1189, 1193, 1303, 1633
BtsIMutI	CAGTG	4 cut(s)	91, 106, 222, 646
BtuMI	TCGCGA	1 cut(s)	996
Cac8I	GCNNGC	3 cut(s)	119, 222, 751
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	3 cut(s)	606, 931, 1456
CfoI	GCGC	5 cut(s)	119, 121, 702, 1464, 1878
Cfr13I	GGNCC	1 cut(s)	914
CseI	GACGC	1 cut(s)	1867
Csp6I	GTAC	5 cut(s)	557, 651, 793, 1226, 1647
CviQI	GTAC	5 cut(s)	557, 651, 793, 1226, 1647
DdeI	CTNAG	4 cut(s)	348, 723, 1091, 1507
DpnI	GATC	8 cut(s)	683, 859, 873, 999, 1376, 1632, 1725, 1988
DpnII	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
DraI	TTTAAA	2 cut(s)	409, 1792
EaeI	YGGCCR	1 cut(s)	1400
Eam1104I	CTCTTC	2 cut(s)	45, 848
EarI	CTCTTC	2 cut(s)	45, 848
Eco130I	CCWWGG	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	1555
EcoO65I	GGTNACC	1 cut(s)	1555
EcoRI	GAATTC	1 cut(s)	1574
EcoRII	CCWGG	4 cut(s)	388, 757, 1047, 1069
EcoRV	GATATC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	790
ErhI	CCWWGG	1 cut(s)	267
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	2 cut(s)	558, 1112
FauNDI	CATATG	2 cut(s)	241, 1636
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	921, 1016, 1042, 1400, 2037, 2045
FokI	GGATG	8 cut(s)	404, 671, 962, 995, 1196, 1200, 1310, 1640
Fsp4HI	GCNGC	6 cut(s)	921, 1016, 1042, 1400, 2037, 2045
FspAI	RTGCGCAY	1 cut(s)	701
FspI	TGCGCA	1 cut(s)	701
GlaI	GCGC	5 cut(s)	118, 120, 701, 1463, 1877
GluI	GCNGC	6 cut(s)	921, 1016, 1042, 1400, 2037, 2045
GsaI	CCCAGC	2 cut(s)	1627, 2044
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	1465
HaeIII	GGCC	2 cut(s)	728, 1402
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	1867
HhaI	GCGC	5 cut(s)	119, 121, 702, 1464, 1878
Hin1I	GRCGYC	1 cut(s)	1962
Hin6I	GCGC	5 cut(s)	117, 119, 700, 1462, 1876
HinP1I	GCGC	5 cut(s)	117, 119, 700, 1462, 1876
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	1586
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	4 cut(s)	469, 893, 1271, 1727
Hpy166II	GTNNAC	6 cut(s)	89, 104, 274, 646, 1279, 1649
Hpy188I	TCNGA	3 cut(s)	865, 1452, 1804
Hpy8I	GTNNAC	6 cut(s)	89, 104, 274, 646, 1279, 1649
HpyAV	CCTTC	8 cut(s)	300, 354, 579, 936, 1525, 1564, 1649, 1766
HpyCH4III	ACNGT	6 cut(s)	86, 101, 200, 650, 1321, 1555
HpyCH4IV	ACGT	5 cut(s)	132, 178, 1123, 1289, 1962
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 1117
HpyF3I	CTNAG	4 cut(s)	348, 723, 1091, 1507
HpySE526I	ACGT	5 cut(s)	132, 178, 1123, 1289, 1962
Hsp92I	GRCGYC	1 cut(s)	1962
HspAI	GCGC	5 cut(s)	117, 119, 700, 1462, 1876
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
LmnI	GCTCC	3 cut(s)	163, 928, 1814
Lsp1109I	GCAGC	4 cut(s)	907, 1028, 2048, 2056
LweI	GCATC	4 cut(s)	233, 736, 775, 1413
MaeII	ACGT	5 cut(s)	132, 178, 1123, 1289, 1962
MaeIII	GTNAC	3 cut(s)	482, 718, 1555
MalI	GATC	8 cut(s)	683, 859, 873, 999, 1376, 1632, 1725, 1988
MbiI	CCGCTC	2 cut(s)	1399, 1414
MboI	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	3 cut(s)	91, 106, 663
MluCI	AATT	9 cut(s)	260, 327, 602, 711, 866, 1064, 1213, 1311, 1574
MmeI	TCCRAC	2 cut(s)	282, 1950
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	3 cut(s)	1574, 1578, 1659
MseI	TTAA	8 cut(s)	408, 519, 528, 876, 1037, 1172, 1212, 1791
MslI	CAYNNNNRTG	1 cut(s)	1254
MspA1I	CMGCKG	2 cut(s)	920, 1268
MspCI	CTTAAG	1 cut(s)	1036
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	5 cut(s)	161, 390, 759, 1049, 1071
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	4 cut(s)	390, 759, 1049, 1071
MvnI	CGCG	3 cut(s)	119, 996, 1878
MwoI	GCNNNNNNNGC	2 cut(s)	263, 1117
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	2 cut(s)	241, 1636
NdeII	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	996
NsbI	TGCGCA	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	790
PagI	TCATGA	3 cut(s)	606, 931, 1456
PauI	GCGCGC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	3 cut(s)	1574, 1578, 1659
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	6 cut(s)	922, 1017, 1043, 1401, 2038, 2046
Ple19I	CGATCG	1 cut(s)	1726
Ppu21I	YACGTR	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	1123
Psp6I	CCWGG	4 cut(s)	388, 757, 1047, 1069
PspEI	GGTNACC	1 cut(s)	1555
PspFI	CCCAGC	2 cut(s)	1623, 2040
PspGI	CCWGG	4 cut(s)	388, 757, 1047, 1069
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	857
PteI	GCGCGC	1 cut(s)	117
PvuI	CGATCG	1 cut(s)	1726
PvuII	CAGCTG	2 cut(s)	920, 1268
RruI	TCGCGA	1 cut(s)	996
RsaI	GTAC	5 cut(s)	558, 652, 794, 1227, 1648
RsaNI	GTAC	5 cut(s)	557, 651, 793, 1226, 1647
RseI	CAYNNNNRTG	1 cut(s)	1254
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	8 cut(s)	408, 519, 528, 876, 1037, 1172, 1212, 1791
SatI	GCNGC	6 cut(s)	921, 1016, 1042, 1400, 2037, 2045
Sau3AI	GATC	8 cut(s)	681, 857, 871, 997, 1374, 1630, 1723, 1986
Sau96I	GGNCC	1 cut(s)	914
ScrFI	CCNGG	5 cut(s)	161, 390, 759, 1049, 1071
SduI	GDGCHC	3 cut(s)	91, 106, 663
SfaNI	GCATC	4 cut(s)	233, 736, 775, 1413
SfcI	CTRYAG	3 cut(s)	97, 1495, 1918
SinI	GGWCC	1 cut(s)	914
SmiMI	CAYNNNNRTG	1 cut(s)	1254
SmlI	CTYRAG	2 cut(s)	1036, 1427
SmoI	CTYRAG	2 cut(s)	1036, 1427
Sse9I	AATT	9 cut(s)	260, 327, 602, 711, 866, 1064, 1213, 1311, 1574
SsiI	CCGC	4 cut(s)	1015, 1399, 1414, 2059
SspI	AATATT	1 cut(s)	1951
StyD4I	CCNGG	5 cut(s)	159, 388, 757, 1047, 1069
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	6 cut(s)	86, 101, 200, 650, 1321, 1555
TaiI	ACGT	5 cut(s)	135, 181, 1126, 1292, 1965
TaqI	TCGA	2 cut(s)	273, 1726
TaqII	GACCGA	1 cut(s)	706
TasI	AATT	9 cut(s)	260, 327, 602, 711, 866, 1064, 1213, 1311, 1574
TatI	WGTACW	2 cut(s)	650, 792
TauI	GCSGC	2 cut(s)	1018, 1402
Tru1I	TTAA	8 cut(s)	408, 519, 528, 876, 1037, 1172, 1212, 1791
Tru9I	TTAA	8 cut(s)	408, 519, 528, 876, 1037, 1172, 1212, 1791
TscAI	CASTG	4 cut(s)	91, 106, 222, 653
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	4 cut(s)	920, 1041, 2036, 2044
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	8 cut(s)	63, 258, 595, 999, 1567, 1668, 1700, 1946
TspGWI	ACGGA	4 cut(s)	525, 562, 962, 2035
TspRI	CASTG	4 cut(s)	91, 106, 222, 653
Van91I	CCANNNNNTGG	1 cut(s)	317
Vha464I	CTTAAG	1 cut(s)	1036
VneI	GTGCAC	2 cut(s)	87, 102
VpaK11BI	GGWCC	1 cut(s)	914
XapI	RAATTY	4 cut(s)	260, 327, 866, 1574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	3 cut(s)	1574, 1578, 1659
ZraI	GACGTC	1 cut(s)	1963
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.