Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010990

Physical Location & Seq

Genomic Coordinates Reverse (-)

5425711 .. 5427160

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0069200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCAGAAGAGGTGGTGGTTCAAATCCTATCGAGGCTACCTCCCAAATCTTTAATGCGATTTAAATGCGTCCGTAAGTCATGGCGTGCACTGGTCAATAATCCAGGATTCATATCCCAGCATCTCCACTTGTCCAACAAATTTGCCTCCACTCCCATTCTTATCAAGCGTACGGTCATTAGCCGGACCGAAAGTACCAGCGAGGAAGTTGTGTTTTCACTCCTTAATCTTCATAATGATGATTATAACTGTCATCTTGAGGCTAATTGTCATTCTATTGTTGAGGACATCAATTTTCCAGCTTCTATGGGTCTAAAGACGAGGGGCCAATTTATTGAGCTTCCTATGCCTCGTCCTCGTTCGTTTGATGAAGCTGTATATGTTATAGGTCATTGTGATGGGATAATTTGTCTTTTAGTTTTATTTATTTGCACTAGCATTATCTTATGCAATCCAGCAATCAAGGAGTTTAGGCTTGTTAAAGATGTAGATGTAATCTCATTTCATGTCGGATTTGGCTATGATCCCAAATCCAAAGATTACATACTTGTTAATGTCATGTCGACTGGAGAGAAAGTATATGATAACGAGCGTCTCGTTATTCATCCTCCTAGGGCAAAATTATACACCTTGGGAACTGGTTCTTGGAGAGGGATCAATACAAATTATTTGGAAACAGAAACTACCAACTTTTGGCCTAGTCTTTTCCAGTTCTACTTTAAAGGAATTTTCTATTGGTTGGGAAATGAGCAAAGGAAGGAACTCTTCTCTGAGTTTGACAGGGATGATGAGGATAACAATAGACTAGTAATCCTTTTCTATGATACAGGTGATGAACTCTTTCATAGTTTATTGCTTCCAGATGGTTTCTATGACCCAAATGAGGGTCTTTATACTATGCGTCTTGCATTGTTGAATGAATCCATTGCTCTTTATGGCTTTCACTGCATTGGAAACTGTCCTGAACCATTCGAAATTTGGACAATGGTTGACTTTGATGGTACCGACTGTGCTTGGACAAAACAGTTAGCAGTTGTGCCCACCGTGGAACTTTATATGCCAGGGGCAGTTTGGAAGAACAATGCTATTCTAATTAATAGAGAAGGGCGAGTAGTTTCCTACAATTTTGATGAGGAGAAACTTAAGTATAACCCGATCCATGGTGTGCTTCGAGCAGATTTTCAAGCTGCAGTTTGTGTGCGTAGTATAGTTTCAGTCAAGGGACAACCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004484 GO:0004651 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008192 GO:0009452 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016311 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0016817 GO:0016818 GO:0019222 GO:0034641 GO:0036260 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0050355 GO:0050789 GO:0060255 GO:0065007 GO:0070568 GO:0071704 GO:0090304 GO:0098501 GO:0098507 GO:0098518 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

DSPc mRNA_cap_C mRNA_cap_enzyme

Protein Analysis

411

Amino Acids

47.13

Weight (kDa)

5.61

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 43	3.6e-06	F-box-like
F-box	PF00646	3 - 37	8.5e-06	F-box domain
FBA_1	PF07734	117 - 380	1.4e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09100 AT3G09100
fragaria_vesca	FvH4_6g12120 FvH4_6g12120 FvH4_6g12120
malus_domestica	MD04G1146600.v1.1 MD12G1159800.v1.1
prunus_persica	Prupe.6G270400_v2.0.a1
pyrus_communis	pycom04g13230 pycom12g15160
rosa_chinensis	RchiOBHm_Chr3g0463921
rosa_laevigata	RLG00000024736
rosa_multiflora	Rmu_sc0000517.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416140
rosa_rugosa	Rorug03G0069200
rosa_samantha	Rh3AG126200 Rh3BG130200 Rh3CG132700 Rh3DG131400
rosa_wichuraiana	Rw3G010650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
Acc65I	GGTACC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	563
AclWI	GGATC	3 cut(s)	518, 662, 1150
AcsI	RAATTY	3 cut(s)	140, 726, 975
AfaI	GTAC	3 cut(s)	172, 196, 1003
AfiI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
AflII	CTTAAG	1 cut(s)	1142
AgsI	TTSAA	3 cut(s)	23, 916, 1184
AhlI	ACTAGT	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	103, 1060
AjuI	GAANNNNNNNTTGG	4 cut(s)	628, 660, 718, 750
AluBI	AGCT	4 cut(s)	302, 340, 374, 1187
AluI	AGCT	4 cut(s)	302, 340, 374, 1187
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	3 cut(s)	518, 662, 1150
AoxI	GGCC	2 cut(s)	325, 695
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	1187
ApoI	RAATTY	3 cut(s)	140, 726, 975
AseI	ATTAAT	1 cut(s)	1095
Asp700I	GAANNNNTTC	2 cut(s)	640, 840
Asp718I	GGTACC	1 cut(s)	1001
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	186, 325
AsuHPI	GGTGA	1 cut(s)	842
AsuII	TTCGAA	1 cut(s)	972
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	1 cut(s)	611
BaeGI	GKGCMC	2 cut(s)	91, 1041
BanI	GGYRCC	1 cut(s)	1001
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	1174
BccI	CCATC	3 cut(s)	392, 857, 992
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	2 cut(s)	105, 1062
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	4 cut(s)	435, 612, 699, 806
BfmI	CTRYAG	1 cut(s)	1188
BfrI	CTTAAG	1 cut(s)	1142
BisI	GCNGC	1 cut(s)	1188
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	1189
Bme1390I	CCNGG	2 cut(s)	105, 1062
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	186, 325
BmiI	GGNNCC	2 cut(s)	326, 1003
BmrFI	CCNGG	2 cut(s)	105, 1062
BmsI	GCATC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	112
BsaJI	CCNNGG	5 cut(s)	611, 630, 1044, 1061, 1159
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
Bse1I	ACTGG	4 cut(s)	96, 571, 643, 709
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	105, 1062
BseDI	CCNNGG	5 cut(s)	611, 630, 1044, 1061, 1159
BseGI	GGATG	2 cut(s)	604, 790
BseJI	GATNNNNATC	1 cut(s)	112
BseLI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	4 cut(s)	96, 571, 643, 709
BseRI	GAGGAG	1 cut(s)	1148
BseSI	GKGCMC	2 cut(s)	91, 1041
BseXI	GCAGC	1 cut(s)	1174
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	327, 697
BshNI	GGYRCC	1 cut(s)	1001
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	184
BsiWI	CGTACG	1 cut(s)	170
BslI	CCNNNNNNNGG	4 cut(s)	693, 883, 884, 1160
BsmAI	GTCTC	1 cut(s)	599
BsmBI	CGTCTC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	327, 697
Bsp119I	TTCGAA	1 cut(s)	972
Bsp1286I	GDGCHC	2 cut(s)	91, 1041
Bsp143I	GATC	3 cut(s)	523, 654, 1155
Bsp19I	CCATGG	1 cut(s)	1159
BspANI	GGCC	2 cut(s)	327, 697
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	326, 1003
BspMAI	CTGCAG	1 cut(s)	1192
BspPI	GGATC	3 cut(s)	518, 662, 1150
BspT104I	TTCGAA	1 cut(s)	972
BspT107I	GGYRCC	1 cut(s)	1001
BspTI	CTTAAG	1 cut(s)	1142
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	4 cut(s)	96, 571, 643, 709
BssECI	CCNNGG	5 cut(s)	611, 630, 1044, 1061, 1159
BssMI	GATC	3 cut(s)	523, 654, 1155
BssT1I	CCWWGG	3 cut(s)	611, 630, 1159
Bst2UI	CCWGG	2 cut(s)	105, 1062
Bst4CI	ACNGT	6 cut(s)	175, 251, 959, 1010, 1026, 1045
Bst6I	CTCTTC	2 cut(s)	3, 770
BstAFI	CTTAAG	1 cut(s)	1142
BstBI	TTCGAA	1 cut(s)	972
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	1044, 1159
BstF5I	GGATG	2 cut(s)	604, 790
BstKTI	GATC	3 cut(s)	526, 657, 1158
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	3 cut(s)	523, 654, 1155
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 945
BstNI	CCWGG	2 cut(s)	105, 1062
BstSCI	CCNGG	2 cut(s)	103, 1060
BstSFI	CTRYAG	1 cut(s)	1188
BstSLI	GKGCMC	2 cut(s)	91, 1041
BstV1I	GCAGC	1 cut(s)	1174
BsuRI	GGCC	2 cut(s)	327, 697
BtgI	CCRYGG	2 cut(s)	1044, 1159
BtsCI	GGATG	2 cut(s)	604, 790
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	2 cut(s)	89, 943
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	186, 325
CpoI	CGGWCCG	1 cut(s)	186
CseI	GACGC	3 cut(s)	58, 581, 890
Csp6I	GTAC	3 cut(s)	171, 195, 1002
CspI	CGGWCCG	1 cut(s)	186
CviAII	CATG	4 cut(s)	81, 506, 559, 1160
CviQI	GTAC	3 cut(s)	171, 195, 1002
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	3 cut(s)	525, 656, 1157
DpnII	GATC	3 cut(s)	523, 654, 1155
DraI	TTTAAA	2 cut(s)	64, 721
Eam1104I	CTCTTC	2 cut(s)	3, 770
EarI	CTCTTC	2 cut(s)	3, 770
Eco130I	CCWWGG	3 cut(s)	611, 630, 1159
Eco47I	GGWCC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	103, 1060
EcoT14I	CCWWGG	3 cut(s)	611, 630, 1159
ErhI	CCWWGG	3 cut(s)	611, 630, 1159
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	4 cut(s)	84, 509, 562, 1163
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	4 cut(s)	80, 505, 558, 1159
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	1188
FokI	GGATG	2 cut(s)	591, 797
Fsp4HI	GCNGC	1 cut(s)	1188
FspBI	CTAG	4 cut(s)	435, 612, 699, 806
GluI	GCNGC	1 cut(s)	1188
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	327, 697
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	3 cut(s)	58, 581, 890
Hin1II	CATG	4 cut(s)	84, 509, 562, 1163
HincII	GTYRAC	2 cut(s)	564, 991
HindII	GTYRAC	2 cut(s)	564, 991
HinfI	GANTC	2 cut(s)	108, 920
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	89, 564, 991
Hpy188I	TCNGA	2 cut(s)	512, 772
Hpy188III	TCNNGA	3 cut(s)	257, 860, 962
Hpy8I	GTNNAC	3 cut(s)	89, 564, 991
HpyAV	CCTTC	2 cut(s)	751, 1097
HpyCH4III	ACNGT	6 cut(s)	175, 251, 959, 1010, 1026, 1045
HpyCH4V	TGCA	6 cut(s)	89, 432, 450, 908, 948, 1190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 945
HpyF3I	CTNAG	1 cut(s)	771
Hsp92II	CATG	4 cut(s)	84, 509, 562, 1163
KpnI	GGTACC	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	523, 654, 1155
Lsp1109I	GCAGC	1 cut(s)	1174
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	4 cut(s)	435, 612, 699, 806
MalI	GATC	3 cut(s)	525, 656, 1157
MboI	GATC	3 cut(s)	523, 654, 1155
MboII	GAAGA	4 cut(s)	20, 221, 757, 1087
MhlI	GDGCHC	2 cut(s)	91, 1041
MmeI	TCCRAC	2 cut(s)	159, 490
MroXI	GAANNNNTTC	2 cut(s)	640, 840
MseI	TTAA	8 cut(s)	53, 63, 225, 480, 552, 720, 1095, 1143
MslI	CAYNNNNRTG	2 cut(s)	237, 396
MspCI	CTTAAG	1 cut(s)	1142
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	105, 1062
MvaI	CCWGG	2 cut(s)	105, 1062
MwoI	GCNNNNNNNGC	2 cut(s)	346, 945
NcoI	CCATGG	1 cut(s)	1159
NdeII	GATC	3 cut(s)	523, 654, 1155
NlaIII	CATG	4 cut(s)	84, 509, 562, 1163
NlaIV	GGNNCC	2 cut(s)	326, 1003
NspV	TTCGAA	1 cut(s)	972
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PdmI	GAANNNNTTC	2 cut(s)	640, 840
PfeI	GAWTC	2 cut(s)	108, 920
Pfl23II	CGTACG	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	693
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	1189
PshBI	ATTAAT	1 cut(s)	1095
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	103, 1060
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	103, 1060
PspLI	CGTACG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	326, 1003
PspPI	GGNCC	2 cut(s)	186, 325
PstI	CTGCAG	1 cut(s)	1192
RsaI	GTAC	3 cut(s)	172, 196, 1003
RsaNI	GTAC	3 cut(s)	171, 195, 1002
RseI	CAYNNNNRTG	2 cut(s)	237, 396
Rsr2I	CGGWCCG	1 cut(s)	186
RsrII	CGGWCCG	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	8 cut(s)	53, 63, 225, 480, 552, 720, 1095, 1143
SatI	GCNGC	1 cut(s)	1188
Sau3AI	GATC	3 cut(s)	523, 654, 1155
Sau96I	GGNCC	2 cut(s)	186, 325
ScrFI	CCNGG	2 cut(s)	105, 1062
SduI	GDGCHC	2 cut(s)	91, 1041
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	1188
SfuI	TTCGAA	1 cut(s)	972
SinI	GGWCC	1 cut(s)	186
SmiI	ATTTAAAT	1 cut(s)	64
SmiMI	CAYNNNNRTG	2 cut(s)	237, 396
SmlI	CTYRAG	2 cut(s)	257, 1142
SmoI	CTYRAG	2 cut(s)	257, 1142
SpeI	ACTAGT	1 cut(s)	805
SspMI	CTAG	4 cut(s)	435, 612, 699, 806
StyD4I	CCNGG	2 cut(s)	103, 1060
StyI	CCWWGG	3 cut(s)	611, 630, 1159
SwaI	ATTTAAAT	1 cut(s)	64
TaaI	ACNGT	6 cut(s)	175, 251, 959, 1010, 1026, 1045
TaqI	TCGA	4 cut(s)	32, 563, 972, 1171
TaqII	GACCGA	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	108, 920
Tru1I	TTAA	8 cut(s)	53, 63, 225, 480, 552, 720, 1095, 1143
Tru9I	TTAA	8 cut(s)	53, 63, 225, 480, 552, 720, 1095, 1143
TscAI	CASTG	2 cut(s)	96, 950
TseI	GCWGC	1 cut(s)	1187
TspDTI	ATGAA	8 cut(s)	100, 221, 384, 494, 593, 833, 849, 933
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	96, 950
Van91I	CCANNNNNTGG	1 cut(s)	693
Vha464I	CTTAAG	1 cut(s)	1142
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	1095
XapI	RAATTY	3 cut(s)	140, 726, 975
XcmI	CCANNNNNNNNNTGG	2 cut(s)	975, 1068
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	2 cut(s)	640, 840
XspI	CTAG	4 cut(s)	435, 612, 699, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.