AT3G10040
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013052
Physical Location & Seq
Reverse (-)
3096345 .. 3098417
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10040.1

Sequence Viewer

Length: 1296 bp
ATGGAATCGAATGTGATGTTCTCTGGGTTTAGTCCAAGAATGTTGAGCTTAGAAATGCCGCAAAATCCACCAAATCCCCAAAATTCAATTCAGTTCCAGCATCCTCATCCTTACACCACCTCCGGCGACCAACAAACTCAGCCGCCGATAAAATCCTTATACCCATACGCCTCAAAACCCAAACAAATGTCACCCATTAGCGGTGGCGGTTGCGACGACGAGGATCGCGGGTCGGGTTCCGGATCCGGTTGCAACCCTGAAGACAGCGCGGGAACTGACGGGAAGAGGAAATTGTCACAATGGCATAGAATGAAATGGACGGATACAATGGTTAGGCTTTTGATCATGGCGGTTTTCTACATCGGTGACGAAGCTGGTTTAAACGATCCAGTCGACGCCAAGAAAAAGACCGGCGGTGGCGGTGGCGGCGGAGGAGGAGGAGGGATGTTGCAGAAGAAAGGGAAGTGGAAATCAGTGTCGAGAGCTATGGTGGAGAAAGGTTTCTCTGTGTCACCACAACAATGTGAAGACAAGTTCAATGATTTGAACAAGAGGTACAAGAGAGTTAACGATATTCTTGGTAAAGGAATCGCTTGTCGTGTCGTTGAGAATCAAGGATTGTTAGAGAGTATGGATCATTTGACTCCGAAGTTGAAAGATGAAGTCAAGAAGTTGCTTAATTCTAAGCATCTTTTCTTTAGAGAGATGTGTGCTTATCATAATAGTTGTGGTCATCTTGGTGGTCATGACCAACAACCACCGCAACAGAATCCTATTTCGATTCCGATTCCGAGTCAGCAGCAGAACTGTTTTCACGCGGCGGAAGCAGGGAAAATGGCGAGAATTGCGGAGAGGGTGGAGGTGGAGGAGGAAGTAGAGTCTGATATGGCGGAGGATTCGGAGTCAGAGATGGAGGAATCAGAGGAAGAAGAGACGAGGAAGAAGCGGAGGATATCGACGGCGGTGAAGAGGTTGAGGGAAGAAGCGGCAAGTGTAGTGGAAGATGTTGGGAAGAGTGTGTGGGAGAAGAAAGAGTGGATAAGGAGAAAGATGTTGGAGATTGAGGAGAAGAAGATTGGGTATGAGTGGGAAGGAGTGGAGATGGAGAAGCAGAGAGTGAAGTGGATGAGATATAGGAGCAAGAAAGAGAGAGAGATGGAGAAGGCTAAGCTTGACAATCAGAGACGGAGGCTTGAGACGGAGAGGATGATTCTCATGTTACGGCGGAGTGAAATTGAGTTGAATGAGTTACAGTCTTCGGGTACACGGGTTGACCCGAGTTCCGCTAAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

431

Amino Acids

48.87

Weight (kDa)

8.03

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 103 - 200 2.2e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AccII CGCG 3 cut(s) 228, 269, 818
AccIII TCCGGA 1 cut(s) 239
AclWI GGATC 5 cut(s) 231, 237, 250, 380, 642
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 557, 1264
AfiI CCNNNNNNNGG 2 cut(s) 200, 1290
AgsI TTSAA 5 cut(s) 87, 538, 547, 655, 1243
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 48, 374, 485, 1171
AluI AGCT 4 cut(s) 48, 374, 485, 1171
Alw26I GTCTC 3 cut(s) 926, 1177, 1190
AlwI GGATC 5 cut(s) 231, 237, 250, 380, 642
Ama87I CYCGRG 1 cut(s) 1276
Aor13HI TCCGGA 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 799
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 500
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 183, 377, 504, 976
AvaI CYCGRG 1 cut(s) 1276
BaeI ACNNNNGTAYC 4 cut(s) 315, 348, 1254, 1287
BamHI GGATCC 1 cut(s) 242
BbsI GAAGAC 3 cut(s) 267, 534, 1248
BbvI GCAGC 1 cut(s) 811
BccI CCATC 3 cut(s) 904, 1096, 1150
BceAI ACGGC 2 cut(s) 975, 1238
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 926, 1177, 1190
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 6 cut(s) 59, 143, 427, 800, 819, 987
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 6 cut(s) 60, 144, 428, 801, 820, 988
BmeT110I CYCGRG 1 cut(s) 1276
BmiI GGNNCC 2 cut(s) 238, 244
BmsI GCATC 2 cut(s) 109, 697
BpiI GAAGAC 3 cut(s) 267, 534, 1248
Bpu10I CCTNAGC 1 cut(s) 1287
Bpu1102I GCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 1 cut(s) 1214
BsaHI GRCGYC 1 cut(s) 396
BsaWI WCCGGW 2 cut(s) 239, 245
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 1290
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 389
BseAI TCCGGA 1 cut(s) 239
BseGI GGATG 5 cut(s) 100, 106, 450, 1131, 1212
BseLI CCNNNNNNNGG 2 cut(s) 200, 1290
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 5 cut(s) 447, 450, 453, 881, 1079
BseXI GCAGC 1 cut(s) 811
Bsh1236I CGCG 3 cut(s) 228, 269, 818
BsiHKCI CYCGRG 1 cut(s) 1276
BsiSI CCGG 4 cut(s) 123, 240, 246, 411
BslI CCNNNNNNNGG 2 cut(s) 200, 1290
BsmAI GTCTC 3 cut(s) 926, 1177, 1190
BsmBI CGTCTC 3 cut(s) 926, 1177, 1190
BsoBI CYCGRG 1 cut(s) 1276
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 5 cut(s) 223, 242, 342, 385, 634
Bsp1720I GCTNAGC 1 cut(s) 1167
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 3 cut(s) 228, 269, 818
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 238, 244
BspPI GGATC 5 cut(s) 231, 237, 250, 380, 642
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 410
BssMI GATC 5 cut(s) 223, 242, 342, 385, 634
BssNI GRCGYC 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 809, 1254
Bst6I CTCTTC 4 cut(s) 278, 924, 962, 1007
BstACI GRCGYC 1 cut(s) 396
BstDEI CTNAG 5 cut(s) 49, 138, 684, 1167, 1287
BstF5I GGATG 5 cut(s) 100, 106, 450, 1131, 1212
BstFNI CGCG 3 cut(s) 228, 269, 818
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 5 cut(s) 226, 245, 345, 388, 637
BstMAI GTCTC 3 cut(s) 926, 1177, 1190
BstMBI GATC 5 cut(s) 223, 242, 342, 385, 634
BstMWI GCNNNNNNNGC 3 cut(s) 426, 824, 845
BstUI CGCG 3 cut(s) 228, 269, 818
BstV1I GCAGC 1 cut(s) 811
BstV2I GAAGAC 3 cut(s) 267, 534, 1248
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 316
BtsCI GGATG 5 cut(s) 100, 106, 450, 1131, 1212
BtsIMutI CAGTG 1 cut(s) 480
CciI TCATGA 1 cut(s) 745
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 410
CseI GACGC 1 cut(s) 404
Csp6I GTAC 2 cut(s) 556, 1263
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviAII CATG 3 cut(s) 346, 746, 1216
CviJI RGCY 8 cut(s) 48, 142, 337, 374, 485, 1166, 1171, 1192
CviKI_1 RGCY 8 cut(s) 48, 142, 337, 374, 485, 1166, 1171, 1192
CviQI GTAC 2 cut(s) 556, 1263
DdeI CTNAG 5 cut(s) 49, 138, 684, 1167, 1287
DpnI GATC 5 cut(s) 225, 244, 344, 387, 636
DpnII GATC 5 cut(s) 223, 242, 342, 385, 634
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 4 cut(s) 278, 924, 962, 1007
EarI CTCTTC 4 cut(s) 278, 924, 962, 1007
EciI GGCGGA 4 cut(s) 444, 836, 905, 1240
Eco32I GATATC 1 cut(s) 954
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 1276
EcoRV GATATC 1 cut(s) 954
Esp3I CGTCTC 3 cut(s) 926, 1177, 1190
FaeI CATG 3 cut(s) 349, 749, 1219
FatI CATG 3 cut(s) 345, 745, 1215
FauI CCCGC 2 cut(s) 221, 262
FbaI TGATCA 1 cut(s) 342
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 6 cut(s) 59, 143, 427, 800, 819, 987
FokI GGATG 5 cut(s) 87, 93, 457, 1138, 1219
Fsp4HI GCNGC 6 cut(s) 59, 143, 427, 800, 819, 987
GlaI GCGC 1 cut(s) 268
GluI GCNGC 6 cut(s) 59, 143, 427, 800, 819, 987
HapII CCGG 4 cut(s) 123, 240, 246, 411
HgaI GACGC 1 cut(s) 404
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 349, 749, 1219
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 3 cut(s) 394, 568, 1273
HindII GTYRAC 3 cut(s) 394, 568, 1273
HindIII AAGCTT 1 cut(s) 1169
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 4 cut(s) 123, 240, 246, 411
HphI GGTGA 4 cut(s) 183, 377, 504, 976
Hpy166II GTNNAC 4 cut(s) 394, 568, 1265, 1273
Hpy188I TCNGA 8 cut(s) 648, 786, 792, 883, 901, 907, 922, 1182
Hpy188III TCNNGA 4 cut(s) 240, 480, 667, 746
Hpy8I GTNNAC 4 cut(s) 394, 568, 1265, 1273
Hpy99I CGWCG 4 cut(s) 218, 221, 398, 961
HpyAV CCTTC 2 cut(s) 1085, 1156
HpyCH4III ACNGT 2 cut(s) 809, 1254
HpyCH4V TGCA 2 cut(s) 252, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 426, 824, 845
HpyF3I CTNAG 5 cut(s) 49, 138, 684, 1167, 1287
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 349, 749, 1219
HspAI GCGC 1 cut(s) 267
Kpn2I TCCGGA 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 342
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 5 cut(s) 223, 242, 342, 385, 634
LmnI GCTCC 1 cut(s) 1137
Lsp1109I GCAGC 1 cut(s) 811
LweI GCATC 2 cut(s) 109, 697
MaeIII GTNAC 6 cut(s) 189, 294, 365, 510, 1218, 1248
MalI GATC 5 cut(s) 225, 244, 344, 387, 636
MboI GATC 5 cut(s) 223, 242, 342, 385, 634
MflI RGATCY 1 cut(s) 242
MluCI AATT 6 cut(s) 82, 87, 290, 679, 843, 1233
MlyI GAGTC 4 cut(s) 637, 802, 887, 911
MmeI TCCRAC 1 cut(s) 1035
MroI TCCGGA 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 3 cut(s) 380, 567, 678
MslI CAYNNNNRTG 2 cut(s) 520, 738
MspI CCGG 4 cut(s) 123, 240, 246, 411
MssI GTTTAAAC 1 cut(s) 381
MvnI CGCG 3 cut(s) 228, 269, 818
MwoI GCNNNNNNNGC 3 cut(s) 426, 824, 845
NdeII GATC 5 cut(s) 223, 242, 342, 385, 634
NlaIII CATG 3 cut(s) 349, 749, 1219
NlaIV GGNNCC 2 cut(s) 238, 244
NmuCI GTSAC 4 cut(s) 189, 294, 365, 510
PagI TCATGA 1 cut(s) 745
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 9 cut(s) 5, 588, 610, 769, 781, 787, 896, 917, 1210
PkrI GCNGC 6 cut(s) 60, 144, 428, 801, 820, 988
PleI GAGTC 4 cut(s) 637, 801, 886, 910
PmeI GTTTAAAC 1 cut(s) 381
PpsI GAGTC 4 cut(s) 637, 801, 886, 910
PspN4I GGNNCC 2 cut(s) 238, 244
PsrI GAACNNNNNNTAC 2 cut(s) 539, 571
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 2 cut(s) 557, 1264
RsaNI GTAC 2 cut(s) 556, 1263
RseI CAYNNNNRTG 2 cut(s) 520, 738
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 3 cut(s) 380, 567, 678
SatI GCNGC 6 cut(s) 59, 143, 427, 800, 819, 987
Sau3AI GATC 5 cut(s) 223, 242, 342, 385, 634
SchI GAGTC 4 cut(s) 637, 802, 887, 911
SetI ASST 9 cut(s) 50, 122, 376, 487, 502, 557, 864, 974, 1173
SfaNI GCATC 2 cut(s) 109, 697
SmiMI CAYNNNNRTG 2 cut(s) 520, 738
SmlI CTYRAG 1 cut(s) 1193
SmoI CTYRAG 1 cut(s) 1193
Sse9I AATT 6 cut(s) 82, 87, 290, 679, 843, 1233
TaaI ACNGT 2 cut(s) 809, 1254
TaqI TCGA 5 cut(s) 8, 393, 479, 779, 956
TasI AATT 6 cut(s) 82, 87, 290, 679, 843, 1233
TauI GCSGC 5 cut(s) 61, 145, 429, 821, 989
TfiI GAWTC 9 cut(s) 5, 588, 610, 769, 781, 787, 896, 917, 1210
Tru1I TTAA 3 cut(s) 380, 567, 678
Tru9I TTAA 3 cut(s) 380, 567, 678
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 4 cut(s) 189, 294, 365, 510
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 4 cut(s) 189, 294, 365, 510
TspDTI ATGAA 2 cut(s) 326, 675
TspGWI ACGGA 3 cut(s) 335, 1201, 1214
TspRI CASTG 1 cut(s) 480
XapI RAATTY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.