RLG00000024140
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013052
Physical Location & Seq
Reverse (-)
32389008 .. 32390441
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024140

Sequence Viewer

Length: 1434 bp
ATGAGGTCTGGAATGTTAGGTCTAGAAATGCCTTTGCACCAAACACAAAACCCCCCAAATCCTCAGAACCCACACCACCCTATGCACCAACCCCAAATGGTCAGCTATGCCCACCATGAAGCTGATCACAATCATCACCCACAAGCTCACCAATCTGCAAAACATGGGTACCCATATGCCACAAAGCCCAAACAGATCACCCTCAGTGATGAAGATGAACCTGGGTTTGGTGGTGATGACAGCACTGGTGATAACAAGAGGAAAATCTCACCATGGCAGAGAATGAAGTGGACTGACACCATGGTCAGGCTTCTAATCATGGCTGTGTTTTACATTGGGGATGAGGGTGGCTCTGAAGGCCCTGATCCCACAGGGAAGAAGAAGAGTGGTGGAGGATTGCTGCAGAAGAAAGGGAAATGGAAATCGGTGTCGCGGGCTATGATGGAGAAGGGTTTCTATGTCTCTCCTCAGCAATGTGAGGACAAGTTCAATGACTTGAACAAGAGGTACAAGAGGGTGAATGACATACTTGGCAAGGGAACTGCTTGCAAGGTTGTGGAGAATCAAGGGTTACTGGAGAAAATGGAATTGTCATCGAAGATGAAGGATGAAGTTAAAAAACTGCTGAATTCCAAGCACTTGTTCTTCAGGGAAATGTGTGCTTATCACAATAGCTGCGGCCATGGCACTGTTGGTGCTGCTGGAGCTAGCGGTGCGCATAACTCATCCGCGGAAGACCCTTCGGAGGTTCAGTTGCAGCAGCAGCAGCAGCAGCAGCAAAGGTGCTTTCATGTATCGGAAAATGCTCATGTCGTTGCCAATTCGGGCAGAGCAGAGACGGAGGGATCCAAAATGTTGAAAGCAGAGAGTGGTGGCGAGGATGAAGATGAAGACTATGAGGATGATGATTCGGAGGATGACGATGATGAGGAGGAAGAAGGGGTTGTTGAAGGCGGTTCGAGGGGTCAAATTGGGCATGGACATGAGGATGAGGATGACAATGAGCATGAAAGAGCTAAACGGCCAAGAAAGGGAAGCTGTTTCTCTGGGTCCTCACATAAAATGTTGATGCAGCAATTGAGCAGTGAAGTAAGTGGTGTGATCCAAGATGTGTCCAAGAGTCCATGGGAGAAGAAGCAGTGGATGAAAGCAAGGCTGATACAATTGGAGGAGCAACAAGTGAACTACCAATACCAATCTTTCGAGCTCGAAAGGCAAAGGCTCAAGTGGGTCAAGTATAGTAGCAAAAAGGAAAGGGATATGGAAAGAGCTAAGCTTGAGAATGAGAGAAGGCGGCTTGAGAACGAGAGAATGCTATTGCTTGTTAGGCAGAAGGAGCTCGAATTGCTCGATCTGCATCACCACCAGCAGCAACAACATCAGCAACAAAATTCTTCAAACAAGAGAAGCGACCCTTCGTCCCTCACCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

478

Amino Acids

54.39

Weight (kDa)

6.1

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 94 - 187 1.2e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc16I TGCGCA 1 cut(s) 717
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AccII CGCG 2 cut(s) 433, 731
AciI CCGC 7 cut(s) 433, 678, 711, 729, 731, 954, 1294
AclWI GGATC 4 cut(s) 359, 840, 853, 1096
AcoI YGGCCR 2 cut(s) 679, 1022
AcsI RAATTY 2 cut(s) 628, 1390
AcuI CTGAAG 2 cut(s) 375, 631
AfaI GTAC 2 cut(s) 170, 509
AfiI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1031
AgsI TTSAA 5 cut(s) 490, 499, 859, 950, 1398
AhdI GACNNNNNGTC 1 cut(s) 1417
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 4 cut(s) 210, 242, 626, 658
Alw21I GWGCWC 2 cut(s) 1209, 1341
Alw26I GTCTC 2 cut(s) 466, 830
AlwI GGATC 4 cut(s) 359, 840, 853, 1096
AoxI GGCC 3 cut(s) 358, 679, 1022
ApoI RAATTY 2 cut(s) 628, 1390
Asp700I GAANNNNTTC 1 cut(s) 452
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 359, 1050
AsuHPI GGTGA 9 cut(s) 128, 140, 190, 245, 260, 261, 529, 1352, 1417
AsuNHI GCTAGC 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1050
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BamHI GGATCC 1 cut(s) 845
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 2 cut(s) 1209, 1341
BbsI GAAGAC 2 cut(s) 741, 897
Bbv12I GWGCWC 2 cut(s) 1209, 1341
BbvCI CCTCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 1037
BciT130I CCWGG 1 cut(s) 222
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 466, 830
BfaI CTAG 2 cut(s) 23, 708
BfmI CTRYAG 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 1272
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 1050
BmeRI GACNNNNNGTC 1 cut(s) 1417
BmgT120I GGNCC 2 cut(s) 359, 1050
BmiI GGNNCC 3 cut(s) 170, 847, 1051
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 1059, 1366
BmtI GCTAGC 1 cut(s) 711
BpiI GAAGAC 2 cut(s) 741, 897
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 596, 723
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 1272
BpuEI CTTGAG 3 cut(s) 1208, 1298, 1319
BsaBI GATNNNNATC 2 cut(s) 129, 1356
BsaJI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1124
BsaWI WCCGGW 1 cut(s) 1427
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1031
Bse1I ACTGG 2 cut(s) 250, 579
Bse3DI GCAATG 1 cut(s) 479
Bse8I GATNNNNATC 2 cut(s) 129, 1356
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1124
BseGI GGATG 9 cut(s) 346, 613, 725, 886, 907, 922, 994, 1000, 1149
BseJI GATNNNNATC 2 cut(s) 129, 1356
BseLI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1031
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 3 cut(s) 77, 217, 482
BseNI ACTGG 2 cut(s) 250, 579
BseRI GAGGAG 3 cut(s) 456, 944, 1184
Bsh1236I CGCG 2 cut(s) 433, 731
BshFI GGCC 3 cut(s) 360, 681, 1024
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 2 cut(s) 1209, 1341
BsiSI CCGG 1 cut(s) 1428
BslFI GGGAC 1 cut(s) 1405
BslI CCNNNNNNNGG 4 cut(s) 227, 306, 745, 1031
BsmAI GTCTC 2 cut(s) 466, 830
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 1 cut(s) 1405
BsmI GAATGC 1 cut(s) 1317
BsnI GGCC 3 cut(s) 360, 681, 1024
Bsp1286I GDGCHC 2 cut(s) 1209, 1341
Bsp143I GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
Bsp1720I GCTNAGC 1 cut(s) 1272
Bsp19I CCATGG 4 cut(s) 272, 300, 682, 1124
BspACI CCGC 7 cut(s) 433, 678, 711, 729, 731, 954, 1294
BspANI GGCC 3 cut(s) 360, 681, 1024
BspCNI CTCAG 3 cut(s) 76, 216, 481
BspFNI CGCG 2 cut(s) 433, 731
BspLI GGNNCC 3 cut(s) 170, 847, 1051
BspMAI CTGCAG 1 cut(s) 405
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 4 cut(s) 359, 840, 853, 1096
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 479
BsrI ACTGG 2 cut(s) 250, 579
BssECI CCNNGG 6 cut(s) 221, 272, 300, 682, 729, 1124
BssMI GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
BssT1I CCWWGG 4 cut(s) 272, 300, 682, 1124
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 435, 547, 709
BstDEI CTNAG 4 cut(s) 63, 203, 468, 1272
BstDSI CCRYGG 5 cut(s) 272, 300, 682, 729, 1124
BstF5I GGATG 9 cut(s) 346, 613, 725, 886, 907, 922, 994, 1000, 1149
BstFNI CGCG 2 cut(s) 433, 731
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 6 cut(s) 127, 198, 367, 848, 1104, 1354
BstMAI GTCTC 2 cut(s) 466, 830
BstMBI GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 2 cut(s) 433, 731
BstV2I GAAGAC 2 cut(s) 741, 897
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
BsuRI GGCC 3 cut(s) 360, 681, 1024
BtgI CCRYGG 5 cut(s) 272, 300, 682, 729, 1124
BtsCI GGATG 9 cut(s) 346, 613, 725, 886, 907, 922, 994, 1000, 1149
BtsI GCAGTG 2 cut(s) 1090, 1145
BtsIMutI CAGTG 5 cut(s) 211, 243, 687, 1090, 1145
Cac8I GCNNGC 3 cut(s) 435, 547, 709
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 359, 1050
Cfr42I CCGCGG 1 cut(s) 732
Csp6I GTAC 2 cut(s) 169, 508
CviQI GTAC 2 cut(s) 169, 508
DdeI CTNAG 4 cut(s) 63, 203, 468, 1272
DpnI GATC 6 cut(s) 126, 197, 366, 847, 1103, 1353
DpnII GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
DrdI GACNNNNNNGTC 1 cut(s) 302
DriI GACNNNNNGTC 1 cut(s) 1417
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 679, 1022
Eam1104I CTCTTC 1 cut(s) 377
Eam1105I GACNNNNNGTC 1 cut(s) 1417
EarI CTCTTC 1 cut(s) 377
Ecl136II GAGCTC 2 cut(s) 1207, 1339
Eco130I CCWWGG 4 cut(s) 272, 300, 682, 1124
Eco24I GRGCYC 2 cut(s) 1209, 1341
Eco47I GGWCC 1 cut(s) 1050
Eco53kI GAGCTC 2 cut(s) 1207, 1339
Eco57I CTGAAG 2 cut(s) 375, 631
EcoICRI GAGCTC 2 cut(s) 1207, 1339
EcoO109I RGGNCCY 2 cut(s) 359, 1050
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 4 cut(s) 272, 300, 682, 1124
EcoT38I GRGCYC 2 cut(s) 1209, 1341
ErhI CCWWGG 4 cut(s) 272, 300, 682, 1124
Esp3I CGTCTC 1 cut(s) 830
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 1 cut(s) 1405
FauI CCCGC 1 cut(s) 426
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 124
FokI GGATG 9 cut(s) 353, 620, 712, 893, 914, 929, 1001, 1007, 1156
FriOI GRGCYC 2 cut(s) 1209, 1341
FspAI RTGCGCAY 1 cut(s) 717
FspBI CTAG 2 cut(s) 23, 708
FspI TGCGCA 1 cut(s) 717
GlaI GCGC 1 cut(s) 717
GsuI CTGGAG 2 cut(s) 596, 723
HaeIII GGCC 3 cut(s) 360, 681, 1024
HapII CCGG 1 cut(s) 1428
HhaI GCGC 1 cut(s) 718
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HindIII AAGCTT 1 cut(s) 1274
HinfI GANTC 3 cut(s) 562, 908, 1120
HpaII CCGG 1 cut(s) 1428
HphI GGTGA 9 cut(s) 128, 140, 190, 245, 260, 261, 529, 1352, 1417
Hpy166II GTNNAC 2 cut(s) 291, 1183
Hpy188I TCNGA 5 cut(s) 66, 355, 745, 799, 913
Hpy188III TCNNGA 2 cut(s) 9, 23
Hpy8I GTNNAC 2 cut(s) 291, 1183
HpyAV CCTTC 9 cut(s) 350, 442, 598, 750, 932, 944, 1284, 1327, 1425
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4V TGCA 8 cut(s) 37, 85, 158, 403, 549, 757, 1072, 1357
HpyF3I CTNAG 4 cut(s) 63, 203, 468, 1272
HspAI GCGC 1 cut(s) 716
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 124
KspI CCGCGG 1 cut(s) 732
Kzo9I GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
LmnI GCTCC 3 cut(s) 704, 1171, 1336
LweI GCATC 2 cut(s) 1059, 1366
MaeI CTAG 2 cut(s) 23, 708
MaeIII GTNAC 1 cut(s) 570
MalI GATC 6 cut(s) 126, 197, 366, 847, 1103, 1353
MboI GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
MfeI CAATTG 2 cut(s) 1076, 1163
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 2 cut(s) 1209, 1341
MluCI AATT 8 cut(s) 587, 628, 820, 969, 1076, 1163, 1343, 1390
MlyI GAGTC 1 cut(s) 1129
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 3 cut(s) 323, 981, 987
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 1 cut(s) 1428
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 2 cut(s) 1076, 1163
Mva1269I GAATGC 1 cut(s) 1317
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 2 cut(s) 433, 731
NcoI CCATGG 4 cut(s) 272, 300, 682, 1124
NdeI CATATG 1 cut(s) 175
NdeII GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
NheI GCTAGC 1 cut(s) 707
NlaIV GGNNCC 3 cut(s) 170, 847, 1051
NsbI TGCGCA 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 1347
PctI GAATGC 1 cut(s) 1317
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 562, 908
PleI GAGTC 1 cut(s) 1128
PpsI GAGTC 1 cut(s) 1128
PpuMI RGGWCCY 1 cut(s) 1050
Psp124BI GAGCTC 2 cut(s) 1209, 1341
Psp5II RGGWCCY 1 cut(s) 1050
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 170, 847, 1051
PspPI GGNCC 2 cut(s) 359, 1050
PspPPI RGGWCCY 1 cut(s) 1050
PsrI GAACNNNNNNTAC 4 cut(s) 491, 523, 1175, 1207
PstI CTGCAG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 845
RsaI GTAC 2 cut(s) 170, 509
RsaNI GTAC 2 cut(s) 169, 508
RseI CAYNNNNRTG 3 cut(s) 323, 981, 987
SacI GAGCTC 2 cut(s) 1209, 1341
SacII CCGCGG 1 cut(s) 732
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 6 cut(s) 124, 195, 364, 845, 1101, 1351
Sau96I GGNCC 2 cut(s) 359, 1050
SchI GAGTC 1 cut(s) 1129
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 1209, 1341
SfaNI GCATC 2 cut(s) 1059, 1366
SfcI CTRYAG 1 cut(s) 401
Sfr303I CCGCGG 1 cut(s) 732
SgrBI CCGCGG 1 cut(s) 732
SinI GGWCC 1 cut(s) 1050
SmiMI CAYNNNNRTG 3 cut(s) 323, 981, 987
SmlI CTYRAG 3 cut(s) 1223, 1277, 1298
SmoI CTYRAG 3 cut(s) 1223, 1277, 1298
Sse9I AATT 8 cut(s) 587, 628, 820, 969, 1076, 1163, 1343, 1390
SsiI CCGC 7 cut(s) 433, 678, 711, 729, 731, 954, 1294
SspMI CTAG 2 cut(s) 23, 708
SstI GAGCTC 2 cut(s) 1209, 1341
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 4 cut(s) 272, 300, 682, 1124
TaaI ACNGT 1 cut(s) 691
TaqI TCGA 6 cut(s) 596, 959, 1203, 1209, 1341, 1350
TasI AATT 8 cut(s) 587, 628, 820, 969, 1076, 1163, 1343, 1390
TauI GCSGC 2 cut(s) 681, 1297
TfiI GAWTC 2 cut(s) 562, 908
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 5 cut(s) 211, 250, 694, 1090, 1145
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 5 cut(s) 211, 250, 694, 1090, 1145
VpaK11BI GGWCC 1 cut(s) 1050
XapI RAATTY 2 cut(s) 628, 1390
XbaI TCTAGA 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 23, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.