Rorug03G0118900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006335
Physical Location & Seq
Reverse (-)
9637067 .. 9640446
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0118900.1

Sequence Viewer

Length: 1233 bp
ATGAAAACGTTGGCGAGTCCCAGTTCGGGGGTGGTCCTGGAAATTTACAGGGACAGAGAGGCTGGCTTGGTGAACAGGGTTGAAGAAGCTTCTTGCTTTTTCAGGCCTCACAAGAAAAATGGAGACTTTCGGTTCTTGAATTTGGTGGCGTTTCTGCAACAGAGAAAGCCCATCAAACCTGTCGTTTGTCTTTCATCGAAAACCCAGGCAGAATTGGAGACTACAGATGCTCAGATTCAAGAAACATATCCAACAAAAACTATGCATGTCAAGTTCCAGTTGCAGAAAGAGTGCTCCTTTGGTCAGCATTTCCTCATAGTAGGGGATGATCCTATGTTGGGTTTATGGGACCCTGAGAGAGCAATACAGATGGACTGGTCTGATGGGAATGTGTGGTCTGTTGAGCTGGATATACCTGTTGGGAAATCAATCCAGTTCAAGTTCATACTAAACGGAAGCGCAGGGAATATCTTGTGGCAACCTGGCCCAGATCGAATTTTTCAAACCTGGGAAACTGAGAACACAATCACTGTTTCTGAAGATTGGGGAGATGCTGAACTTCAGAAAATAACAGAAGAAGCACAAGTTTATAATCAAATTGAGGATTCTAATATCAACTCAGATATATTGATTCCAGAGGATGACAACTTGACTTTTCCAGAAGAGGAGCCAGTGTTTAATATAAACATGGAGTCGGCCAATGTTGATAGTTACACTGATCCAGCACAGATACCGTTAGTGGAATCATACCAGGAACAAATTGTTGCTGATAACATATCTGTCTCACAAGAGAAGCCCAAAACTTTTGTTGCTGAGAATATAACACCAAAATGGCCAAAGCAAATGATGGAACCATACGAGGAACAAATGGTTGCAAGAACTAATGCCCCAAGTGAGGATTCTGCAGCCATCCCAAACGAGATGATGGTGGCACAGAACATTTTTGGAAATAATGGCAGAGCTGCAACAGCAAGGAACCTCGCAAGCTCAAACACTGAGGAAAGCCTAATGAACTATGAGGAAGAAGGACCTGTTCTGGTACCTGGCTTGAGTCGTGCACAAGCTGTTCCAACTGAAGAAGCAAACAAAGAGGAAGTTGAGAAACCAATGACCTTTGATGGCTCGGTTGGAGCTTATGAAGCTAAGGAACTGAATATGCCAGAGAAGAGAAGCAAGAACCATATAGGGAATCACCTCAAGCAGAAACTATTGAGATGTTCAATGATAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

410

Amino Acids

46.25

Weight (kDa)

4.59

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_20 PF00686 88 - 176 6.1e-21 Starch binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
Acc65I GGTACC 1 cut(s) 1039
AccB1I GGYRCC 1 cut(s) 1039
AclI AACGTT 1 cut(s) 8
AclWI GGATC 2 cut(s) 323, 713
AcoI YGGCCR 2 cut(s) 696, 833
AcsI RAATTY 3 cut(s) 42, 139, 495
AcuI CTGAAG 3 cut(s) 545, 558, 1095
AfaI GTAC 1 cut(s) 1041
AfiI CCNNNNNNNGG 4 cut(s) 26, 27, 338, 895
AgsI TTSAA 6 cut(s) 83, 139, 239, 439, 503, 1221
AjnI CCWGG 6 cut(s) 36, 204, 481, 506, 750, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 883, 915
AluBI AGCT 7 cut(s) 89, 406, 962, 987, 1064, 1133, 1142
AluI AGCT 7 cut(s) 89, 406, 962, 987, 1064, 1133, 1142
Alw21I GWGCWC 2 cut(s) 296, 1060
Alw26I GTCTC 3 cut(s) 117, 212, 787
Alw44I GTGCAC 1 cut(s) 1056
AlwI GGATC 2 cut(s) 323, 713
AoxI GGCC 4 cut(s) 104, 484, 696, 833
ApaLI GTGCAC 1 cut(s) 1056
ApeKI GCWGC 2 cut(s) 905, 962
ApoI RAATTY 3 cut(s) 42, 139, 495
Asp718I GGTACC 1 cut(s) 1039
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 4 cut(s) 34, 349, 485, 1028
AsuHPI GGTGA 2 cut(s) 82, 1184
AvaII GGWCC 3 cut(s) 34, 349, 1028
BaeGI GKGCMC 1 cut(s) 1060
BalI TGGCCA 1 cut(s) 835
BanI GGYRCC 1 cut(s) 1039
Bbv12I GWGCWC 2 cut(s) 296, 1060
BbvI GCAGC 2 cut(s) 917, 949
BccI CCATC 7 cut(s) 179, 364, 377, 841, 917, 919, 1112
BciT130I CCWGG 6 cut(s) 38, 206, 483, 508, 752, 1044
BcoDI GTCTC 3 cut(s) 117, 212, 787
BfmI CTRYAG 2 cut(s) 222, 903
BisI GCNGC 2 cut(s) 906, 963
BlsI GCNGC 2 cut(s) 907, 964
Bme1390I CCNGG 6 cut(s) 38, 206, 483, 508, 752, 1044
Bme18I GGWCC 3 cut(s) 34, 349, 1028
BmgT120I GGNCC 4 cut(s) 34, 349, 485, 1028
BmiI GGNNCC 6 cut(s) 350, 351, 669, 852, 977, 1041
BmrFI CCNGG 6 cut(s) 38, 206, 483, 508, 752, 1044
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 2 cut(s) 217, 541
BmuI ACTGGG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 1143
BpuEI CTTGAG 2 cut(s) 1069, 1181
BsaJI CCNNGG 2 cut(s) 204, 507
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 27, 338, 895
Bse1I ACTGG 5 cut(s) 21, 277, 380, 433, 671
BseBI CCWGG 6 cut(s) 38, 206, 483, 508, 752, 1044
BseDI CCNNGG 2 cut(s) 204, 507
BseGI GGATG 3 cut(s) 331, 646, 909
BseLI CCNNNNNNNGG 4 cut(s) 26, 27, 338, 895
BseMII CTCAG 6 cut(s) 245, 345, 507, 633, 804, 987
BseNI ACTGG 5 cut(s) 21, 277, 380, 433, 671
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 1 cut(s) 1060
BseXI GCAGC 2 cut(s) 917, 949
BshFI GGCC 4 cut(s) 106, 486, 698, 835
BshNI GGYRCC 1 cut(s) 1039
BsiHKAI GWGCWC 2 cut(s) 296, 1060
BslFI GGGAC 3 cut(s) 3, 65, 362
BslI CCNNNNNNNGG 4 cut(s) 26, 27, 338, 895
BsmAI GTCTC 3 cut(s) 117, 212, 787
BsmFI GGGAC 3 cut(s) 3, 65, 362
BsnI GGCC 4 cut(s) 106, 486, 698, 835
Bsp1286I GDGCHC 2 cut(s) 296, 1060
Bsp143I GATC 3 cut(s) 328, 490, 718
BspANI GGCC 4 cut(s) 106, 486, 698, 835
BspCNI CTCAG 6 cut(s) 244, 346, 508, 632, 805, 988
BspLI GGNNCC 6 cut(s) 350, 351, 669, 852, 977, 1041
BspMAI CTGCAG 1 cut(s) 907
BspPI GGATC 2 cut(s) 323, 713
BspT107I GGYRCC 1 cut(s) 1039
BsrI ACTGG 5 cut(s) 21, 277, 380, 433, 671
BssECI CCNNGG 2 cut(s) 204, 507
BssMI GATC 3 cut(s) 328, 490, 718
Bst2UI CCWGG 6 cut(s) 38, 206, 483, 508, 752, 1044
Bst4CI ACNGT 2 cut(s) 532, 735
Bst6I CTCTTC 2 cut(s) 657, 1160
BstC8I GCNNGC 2 cut(s) 64, 985
BstDEI CTNAG 7 cut(s) 231, 354, 516, 619, 813, 996, 1143
BstF5I GGATG 3 cut(s) 331, 646, 909
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 3 cut(s) 331, 493, 721
BstMAI GTCTC 3 cut(s) 117, 212, 787
BstMBI GATC 3 cut(s) 328, 490, 718
BstMWI GCNNNNNNNGC 2 cut(s) 968, 1139
BstNI CCWGG 6 cut(s) 38, 206, 483, 508, 752, 1044
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 6 cut(s) 36, 204, 481, 506, 750, 1042
BstSFI CTRYAG 2 cut(s) 222, 903
BstSLI GKGCMC 1 cut(s) 1060
BstV1I GCAGC 2 cut(s) 917, 949
BsuRI GGCC 4 cut(s) 106, 486, 698, 835
BtsCI GGATG 3 cut(s) 331, 646, 909
BtsIMutI CAGTG 4 cut(s) 528, 678, 714, 993
Cac8I GCNNGC 2 cut(s) 64, 985
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 4 cut(s) 34, 349, 485, 1028
Csp6I GTAC 1 cut(s) 1040
CviAII CATG 2 cut(s) 266, 688
CviQI GTAC 1 cut(s) 1040
DdeI CTNAG 7 cut(s) 231, 354, 516, 619, 813, 996, 1143
DpnI GATC 3 cut(s) 330, 492, 720
DpnII GATC 3 cut(s) 328, 490, 718
EaeI YGGCCR 2 cut(s) 696, 833
Eam1104I CTCTTC 2 cut(s) 657, 1160
EarI CTCTTC 2 cut(s) 657, 1160
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 3 cut(s) 34, 349, 1028
Eco57I CTGAAG 3 cut(s) 545, 558, 1095
EcoO109I RGGNCCY 2 cut(s) 349, 1028
EcoRII CCWGG 6 cut(s) 36, 204, 481, 506, 750, 1042
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 2 cut(s) 269, 691
FaqI GGGAC 3 cut(s) 3, 65, 362
FatI CATG 2 cut(s) 265, 687
Fnu4HI GCNGC 2 cut(s) 906, 963
FokI GGATG 3 cut(s) 338, 653, 896
Fsp4HI GCNGC 2 cut(s) 906, 963
GlaI GCGC 1 cut(s) 460
GluI GCNGC 2 cut(s) 906, 963
HaeIII GGCC 4 cut(s) 106, 486, 698, 835
HhaI GCGC 1 cut(s) 461
Hin1II CATG 2 cut(s) 269, 691
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 9 cut(s) 16, 235, 605, 631, 692, 743, 899, 1051, 1189
HphI GGTGA 2 cut(s) 82, 1184
Hpy166II GTNNAC 2 cut(s) 73, 1058
Hpy188I TCNGA 5 cut(s) 234, 382, 538, 564, 622
Hpy188III TCNNGA 4 cut(s) 136, 239, 635, 659
Hpy8I GTNNAC 2 cut(s) 73, 1058
HpyAV CCTTC 1 cut(s) 1019
HpyCH4III ACNGT 2 cut(s) 532, 735
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 7 cut(s) 157, 265, 283, 875, 905, 965, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 968, 1139
HpyF3I CTNAG 7 cut(s) 231, 354, 516, 619, 813, 996, 1143
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 2 cut(s) 269, 691
HspAI GCGC 1 cut(s) 459
KflI GGGWCCC 1 cut(s) 349
KpnI GGTACC 1 cut(s) 1043
Kzo9I GATC 3 cut(s) 328, 490, 718
LmnI GCTCC 3 cut(s) 299, 667, 1130
Lsp1109I GCAGC 2 cut(s) 917, 949
LweI GCATC 2 cut(s) 217, 541
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 710
MalI GATC 3 cut(s) 330, 492, 720
MboI GATC 3 cut(s) 328, 490, 718
MboII GAAGA 7 cut(s) 95, 551, 587, 674, 1034, 1088, 1177
MhlI GDGCHC 2 cut(s) 296, 1060
MlsI TGGCCA 1 cut(s) 835
MluCI AATT 6 cut(s) 42, 139, 212, 495, 597, 759
MluNI TGGCCA 1 cut(s) 835
MlyI GAGTC 3 cut(s) 25, 701, 1060
MmeI TCCRAC 3 cut(s) 275, 1094, 1108
Mox20I TGGCCA 1 cut(s) 835
Mph1103I ATGCAT 1 cut(s) 267
MscI TGGCCA 1 cut(s) 835
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 1 cut(s) 829
Msp20I TGGCCA 1 cut(s) 835
MspR9I CCNGG 6 cut(s) 38, 206, 483, 508, 752, 1044
MvaI CCWGG 6 cut(s) 38, 206, 483, 508, 752, 1044
MwoI GCNNNNNNNGC 2 cut(s) 968, 1139
NdeII GATC 3 cut(s) 328, 490, 718
NlaIII CATG 2 cut(s) 269, 691
NlaIV GGNNCC 6 cut(s) 350, 351, 669, 852, 977, 1041
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PceI AGGCCT 1 cut(s) 106
PfeI GAWTC 6 cut(s) 235, 605, 631, 743, 899, 1189
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 2 cut(s) 907, 964
PleI GAGTC 3 cut(s) 24, 700, 1059
PpsI GAGTC 3 cut(s) 24, 700, 1059
PpuMI RGGWCCY 2 cut(s) 349, 1028
PsiI TTATAA 1 cut(s) 591
Psp1406I AACGTT 1 cut(s) 8
Psp5II RGGWCCY 2 cut(s) 349, 1028
Psp6I CCWGG 6 cut(s) 36, 204, 481, 506, 750, 1042
PspGI CCWGG 6 cut(s) 36, 204, 481, 506, 750, 1042
PspN4I GGNNCC 6 cut(s) 350, 351, 669, 852, 977, 1041
PspPI GGNCC 4 cut(s) 34, 349, 485, 1028
PspPPI RGGWCCY 2 cut(s) 349, 1028
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 1 cut(s) 1041
RsaNI GTAC 1 cut(s) 1040
RseI CAYNNNNRTG 1 cut(s) 829
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 2 cut(s) 906, 963
Sau3AI GATC 3 cut(s) 328, 490, 718
Sau96I GGNCC 4 cut(s) 34, 349, 485, 1028
SchI GAGTC 3 cut(s) 25, 701, 1060
ScrFI CCNGG 6 cut(s) 38, 206, 483, 508, 752, 1044
SduI GDGCHC 2 cut(s) 296, 1060
SfaNI GCATC 2 cut(s) 217, 541
SfcI CTRYAG 2 cut(s) 222, 903
SinI GGWCC 3 cut(s) 34, 349, 1028
SmiMI CAYNNNNRTG 1 cut(s) 829
SmlI CTYRAG 2 cut(s) 1048, 1196
SmoI CTYRAG 2 cut(s) 1048, 1196
Sse9I AATT 6 cut(s) 42, 139, 212, 495, 597, 759
SseBI AGGCCT 1 cut(s) 106
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 6 cut(s) 36, 204, 481, 506, 750, 1042
TaaI ACNGT 2 cut(s) 532, 735
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 197, 493
TasI AATT 6 cut(s) 42, 139, 212, 495, 597, 759
TfiI GAWTC 6 cut(s) 235, 605, 631, 743, 899, 1189
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 4 cut(s) 535, 678, 721, 1000
TseI GCWGC 2 cut(s) 905, 962
TspDTI ATGAA 5 cut(s) 17, 183, 433, 1025, 1152
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 4 cut(s) 535, 678, 721, 1000
VneI GTGCAC 1 cut(s) 1056
VpaK11BI GGWCC 3 cut(s) 34, 349, 1028
XapI RAATTY 3 cut(s) 42, 139, 495
XceI RCATGY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.