Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Forward (+)

14428432 .. 14431463

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGCGTCGCTCTCGAACCTGACGGAGGGGACGAACGGGTTGGGTCATGGACCGGGTCTTGGAGACATACCCGAGAGCTGCGTGGCCTGCGTGTTCATGTACCTGACTCCGCCTGAGATTTGCAACCTTGCTAGGCTCAACAGGGCTTTTCGTGGTGCGGCGTCGTCTGATTCTGTTTGGGAATCCAAGTTGCCCCCAAATTACCATGATCTACTCGATTTGTTGCCTCCTCAGATGTACCAGAACCTCTCTAAGAAGGACATCTTTGCTTTGCTATCTCGCCCTATACCCTTCGACGATGGCAATAAGCTGGTATGGATAGACAGGGTCACGGGAAGGGTTTGCACTTCGGTTTCCGCGAAGGCCATGGCCATCACGGGGATTGAAGATCGCCGATACTGGAACTGGATTCCCACGGAAGAATCTAGGTTTCATGTGGTGGCTTATTTACAGCAAATATGGTGGTTCGAAGTGGATGGGGTGGTGAAGTTCCCTTTTCCTGCTGATATCTATACTCTTTCTTTCAGGCTTCACATTGGAAGATTTTCAAAAAGATTGGGACGGCGTGTTTGCAATTTTGAGCACACCCATGGTTGGGATATAAAGCCAGTACGATTTGAGTTATCAACTTCAGATGGACAGCAAGCATCATACGAATGCTGCTTGGATCAAATCGAACACGATGATGCATATGGAAATCATAAGCGCGGGTGCTGGGTTGACTACAAGGTTGGTGAATTTACCGTCACCGATTCAGATCCTGTAACTGAAGTTAGATTTTCCATGAAGCAGATCGATTGCACTCATTCCAAAGGTGGGCTATGTGTGGATTCTGTTTTTATTGTCCCCAGTGACTTGAAAGGGCGGAAAAGGATAGGAGTTTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

298

Amino Acids

33.61

Weight (kDa)

6.5

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	362, 711
AciI	CCGC	5 cut(s)	113, 161, 360, 711, 868
AclWI	GGATC	2 cut(s)	678, 755
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	2 cut(s)	618, 792
AcyI	GRCGYC	2 cut(s)	8, 164
AfaI	GTAC	3 cut(s)	104, 242, 615
AfiI	CCNNNNNNNGG	6 cut(s)	28, 62, 381, 597, 598, 819
AgsI	TTSAA	4 cut(s)	389, 552, 862, 889
AluBI	AGCT	2 cut(s)	81, 313
AluI	AGCT	2 cut(s)	81, 313
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	678, 755
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	87, 366, 372
ApeKI	GCWGC	2 cut(s)	81, 663
ApoI	RAATTY	1 cut(s)	740
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp700I	GAANNNNTTC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	499, 742, 749
AsuII	TTCGAA	1 cut(s)	471
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	68, 650
BccI	CCATC	4 cut(s)	296, 383, 473, 632
BceAI	ACGGC	1 cut(s)	581
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	135, 429
BisI	GCNGC	3 cut(s)	82, 162, 664
BlsI	GCNGC	3 cut(s)	83, 163, 665
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	2 cut(s)	659, 679
BmuI	ACTGGG	1 cut(s)	846
Bpu14I	TTCGAA	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	2 cut(s)	8, 164
BsaJI	CCNNGG	3 cut(s)	369, 417, 592
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 62, 381, 597, 598, 819
Bse1I	ACTGG	4 cut(s)	407, 413, 611, 852
Bse8I	GATNNNNATC	1 cut(s)	759
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	3 cut(s)	369, 417, 592
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	6 cut(s)	28, 62, 381, 597, 598, 819
BseMII	CTCAG	2 cut(s)	108, 248
BseNI	ACTGG	4 cut(s)	407, 413, 611, 852
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	68, 650
BseYI	CCCAGC	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	362, 711
BshFI	GGCC	3 cut(s)	89, 368, 374
BshVI	ATCGAT	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	3 cut(s)	46, 576, 833
BslI	CCNNNNNNNGG	6 cut(s)	28, 62, 381, 597, 598, 819
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	46, 576, 833
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	89, 368, 374
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	5 cut(s)	211, 391, 670, 760, 795
Bsp19I	CCATGG	2 cut(s)	369, 592
BspACI	CCGC	5 cut(s)	113, 161, 360, 711, 868
BspANI	GGCC	3 cut(s)	89, 368, 374
BspCNI	CTCAG	2 cut(s)	109, 247
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	2 cut(s)	362, 711
BspPI	GGATC	2 cut(s)	678, 755
BspT104I	TTCGAA	1 cut(s)	471
BsrI	ACTGG	4 cut(s)	407, 413, 611, 852
BssECI	CCNNGG	3 cut(s)	369, 417, 592
BssMI	GATC	5 cut(s)	211, 391, 670, 760, 795
BssNI	GRCGYC	2 cut(s)	8, 164
BssT1I	CCWWGG	2 cut(s)	369, 592
Bst4CI	ACNGT	1 cut(s)	748
BstACI	GRCGYC	2 cut(s)	8, 164
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	91, 648
BstDEI	CTNAG	3 cut(s)	117, 234, 255
BstDSI	CCRYGG	3 cut(s)	369, 417, 592
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	362, 711
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	5 cut(s)	214, 394, 673, 763, 798
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	5 cut(s)	211, 391, 670, 760, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	2 cut(s)	362, 711
BstV1I	GCAGC	2 cut(s)	68, 650
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	89, 368, 374
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	3 cut(s)	369, 417, 592
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	2 cut(s)	91, 648
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	1 cut(s)	711
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	103, 241, 614
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	7 cut(s)	50, 100, 209, 370, 437, 593, 787
CviQI	GTAC	3 cut(s)	103, 241, 614
DdeI	CTNAG	3 cut(s)	117, 234, 255
DpnI	GATC	5 cut(s)	213, 393, 672, 762, 797
DpnII	GATC	5 cut(s)	211, 391, 670, 760, 795
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	2 cut(s)	102, 883
Eco130I	CCWWGG	2 cut(s)	369, 592
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	618, 792
Eco88I	CYCGRG	1 cut(s)	74
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	369, 592
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	369, 592
FaeI	CATG	7 cut(s)	53, 103, 212, 373, 440, 596, 790
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	3 cut(s)	46, 576, 833
FatI	CATG	7 cut(s)	49, 99, 208, 369, 436, 592, 786
FauI	CCCGC	1 cut(s)	704
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	82, 162, 664
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	82, 162, 664
FspBI	CTAG	2 cut(s)	135, 429
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	3 cut(s)	82, 162, 664
GsaI	CCCAGC	1 cut(s)	721
HaeIII	GGCC	3 cut(s)	89, 368, 374
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	711
Hin1I	GRCGYC	2 cut(s)	8, 164
Hin1II	CATG	7 cut(s)	53, 103, 212, 373, 440, 596, 790
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	7 cut(s)	109, 173, 185, 412, 425, 755, 833
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	499, 742, 749
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	4 cut(s)	172, 237, 637, 760
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	3 cut(s)	13, 169, 302
HpyAV	CCTTC	4 cut(s)	253, 304, 333, 358
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	5 cut(s)	126, 348, 576, 692, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	3 cut(s)	117, 234, 255
Hsp92I	GRCGYC	2 cut(s)	8, 164
Hsp92II	CATG	7 cut(s)	53, 103, 212, 373, 440, 596, 790
HspAI	GCGC	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	211, 391, 670, 760, 795
Lsp1109I	GCAGC	2 cut(s)	68, 650
LweI	GCATC	2 cut(s)	659, 679
MaeI	CTAG	2 cut(s)	135, 429
MaeIII	GTNAC	4 cut(s)	331, 748, 766, 854
MalI	GATC	5 cut(s)	213, 393, 672, 762, 797
MboI	GATC	5 cut(s)	211, 391, 670, 760, 795
MboII	GAAGA	3 cut(s)	401, 434, 555
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	202, 577, 740
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	22, 240, 243, 260
Mox20I	TGGCCA	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	374
MslI	CAYNNNNRTG	3 cut(s)	591, 658, 687
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	665
MvnI	CGCG	2 cut(s)	362, 711
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	2 cut(s)	369, 592
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	5 cut(s)	211, 391, 670, 760, 795
NlaIII	CATG	7 cut(s)	53, 103, 212, 373, 440, 596, 790
NmuCI	GTSAC	3 cut(s)	331, 748, 854
NsiI	ATGCAT	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 359
PctI	GAATGC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	6 cut(s)	173, 185, 412, 425, 755, 833
PflFI	GACNNNGTC	2 cut(s)	57, 329
PkrI	GCNGC	3 cut(s)	83, 163, 665
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	2 cut(s)	57, 329
RsaI	GTAC	3 cut(s)	104, 242, 615
RsaNI	GTAC	3 cut(s)	103, 241, 614
RseI	CAYNNNNRTG	3 cut(s)	591, 658, 687
SatI	GCNGC	3 cut(s)	82, 162, 664
Sau3AI	GATC	5 cut(s)	211, 391, 670, 760, 795
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	9 cut(s)	24, 83, 108, 132, 252, 315, 434, 735, 820
SfaNI	GCATC	2 cut(s)	659, 679
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	3 cut(s)	591, 658, 687
Sse9I	AATT	3 cut(s)	202, 577, 740
SsiI	CCGC	5 cut(s)	113, 161, 360, 711, 868
SspMI	CTAG	2 cut(s)	135, 429
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	369, 592
TaaI	ACNGT	1 cut(s)	748
TaqI	TCGA	6 cut(s)	17, 219, 297, 471, 678, 798
TasI	AATT	3 cut(s)	202, 577, 740
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	6 cut(s)	173, 185, 412, 425, 755, 833
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	3 cut(s)	331, 748, 854
TseI	GCWGC	2 cut(s)	81, 663
Tsp45I	GTSAC	3 cut(s)	331, 748, 854
TspDTI	ATGAA	3 cut(s)	88, 425, 803
TspGWI	ACGGA	2 cut(s)	41, 434
TspRI	CASTG	1 cut(s)	859
Tth111I	GACNNNGTC	2 cut(s)	57, 329
VpaK11BI	GGWCC	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	2 cut(s)	135, 429
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.