Rh7BG392500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006335
Physical Location & Seq
Reverse (-)
43289292 .. 43289911
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG392500.1

Sequence Viewer

Length: 360 bp
ATGTACCTGACTCCGCCGGAGATTTGCAACCTGGCCAAGCTCAACCAGGCGTTCCGCGGCGCGGCGTCGTCGGATGCGGTTTGGGAATCGAAGCTGCCCCCTAATTACCATGATCTGCTTGATTTGCTGCCTCCCAAGAGGTACCAGAACCTGTCGAAGATGGACATCTTTGCCCTGCTCTCCCGCTCCATGCCTTACGACGATGGCAATAAGGTGTTATGGTTGGACAGGGTCACCGGAAGGGTTTGCATGTCGATTTCTGCAAAGGCCATGGCTATAACAGGGATTGAGGATCGGCGATACTGGAATTGGATTCCTATAGAAGAATCAAGTTCTTGTCGAAAACTGGGTCTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

119

Amino Acids

13.63

Weight (kDa)

8.84

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 82 - 111 1e-06 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccBSI CCGCTC 1 cut(s) 186
AccII CGCG 2 cut(s) 57, 62
AciI CCGC 6 cut(s) 14, 55, 57, 62, 77, 184
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 2 cut(s) 5, 143
AfiI CCNNNNNNNGG 1 cut(s) 61
AjnI CCWGG 2 cut(s) 30, 45
AluBI AGCT 2 cut(s) 40, 94
AluI AGCT 2 cut(s) 40, 94
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 2 cut(s) 33, 267
ApeKI GCWGC 2 cut(s) 94, 127
ArsI GACNNNNNNTTYG 1 cut(s) 334
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 226
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 81, 114
BccI CCATC 2 cut(s) 154, 197
BciT130I CCWGG 2 cut(s) 32, 47
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 4 cut(s) 58, 63, 95, 128
BlsI GCNGC 4 cut(s) 59, 64, 96, 129
Bme1390I CCNGG 2 cut(s) 32, 47
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 32, 47
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 55, 270
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 308, 351
Bse8I GATNNNNATC 1 cut(s) 164
BseBI CCWGG 2 cut(s) 32, 47
BseDI CCNNGG 2 cut(s) 55, 270
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 308, 351
BseXI GCAGC 2 cut(s) 81, 114
Bsh1236I CGCG 2 cut(s) 57, 62
BshFI GGCC 2 cut(s) 35, 269
BshNI GGYRCC 1 cut(s) 141
BsiSI CCGG 2 cut(s) 17, 237
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 2 cut(s) 35, 269
Bso31I GGTCTC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 112, 292
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 6 cut(s) 14, 55, 57, 62, 77, 184
BspANI GGCC 2 cut(s) 35, 269
BspFNI CGCG 2 cut(s) 57, 62
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 308, 351
BssECI CCNNGG 2 cut(s) 55, 270
BssMI GATC 2 cut(s) 112, 292
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 32, 47
BstACI GRCGYC 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 55, 270
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 57, 62
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 115, 295
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 112, 292
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 32, 47
BstNSI RCATGY 1 cut(s) 253
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 30, 45
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 2 cut(s) 57, 62
BstV1I GCAGC 2 cut(s) 81, 114
BsuRI GGCC 2 cut(s) 35, 269
BtgI CCRYGG 2 cut(s) 55, 270
BtsCI GGATG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 62
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 4, 142
CviAII CATG 4 cut(s) 110, 190, 250, 271
CviJI RGCY 5 cut(s) 35, 40, 94, 269, 275
CviKI_1 RGCY 5 cut(s) 35, 40, 94, 269, 275
CviQI GTAC 2 cut(s) 4, 142
DpnI GATC 2 cut(s) 114, 294
DpnII GATC 2 cut(s) 112, 292
EaeI YGGCCR 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 30, 45
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 4 cut(s) 113, 193, 253, 274
FaiI YATR 7 cut(s) 111, 191, 220, 251, 272, 278, 320
FatI CATG 4 cut(s) 109, 189, 249, 270
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 4 cut(s) 58, 63, 95, 128
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 58, 63, 95, 128
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 58, 63, 95, 128
HaeIII GGCC 2 cut(s) 35, 269
HapII CCGG 2 cut(s) 17, 237
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 4 cut(s) 113, 193, 253, 274
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 4 cut(s) 10, 86, 313, 326
HpaII CCGG 2 cut(s) 17, 237
HphI GGTGA 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 73
Hpy99I CGWCG 3 cut(s) 70, 73, 203
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 27, 249, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 4 cut(s) 113, 193, 253, 274
HspAI GCGC 1 cut(s) 60
KpnI GGTACC 1 cut(s) 145
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 112, 292
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 2 cut(s) 81, 114
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 114, 294
MbiI CCGCTC 1 cut(s) 186
MboI GATC 2 cut(s) 112, 292
MboII GAAGA 2 cut(s) 169, 335
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 2 cut(s) 103, 307
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 51, 204
MnlI CCTC 3 cut(s) 132, 141, 283
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 2 cut(s) 17, 237
MspR9I CCNGG 2 cut(s) 32, 47
MvaI CCWGG 2 cut(s) 32, 47
MvnI CGCG 2 cut(s) 57, 62
MwoI GCNNNNNNNGC 1 cut(s) 124
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 112, 292
NlaIII CATG 4 cut(s) 113, 193, 253, 274
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 253
PfeI GAWTC 3 cut(s) 86, 313, 326
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 59, 64, 96, 129
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 30, 45
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 30, 45
PspN4I GGNNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 5, 143
RsaNI GTAC 2 cut(s) 4, 142
SacII CCGCGG 1 cut(s) 58
SatI GCNGC 4 cut(s) 58, 63, 95, 128
Sau3AI GATC 2 cut(s) 112, 292
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 32, 47
SetI ASST 7 cut(s) 9, 33, 42, 96, 143, 153, 216
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 318
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
Sse9I AATT 2 cut(s) 103, 307
SsiI CCGC 6 cut(s) 14, 55, 57, 62, 77, 184
StyD4I CCNGG 2 cut(s) 30, 45
StyI CCWWGG 1 cut(s) 270
TaqI TCGA 4 cut(s) 89, 155, 254, 340
TasI AATT 2 cut(s) 103, 307
TauI GCSGC 2 cut(s) 60, 65
TfiI GAWTC 3 cut(s) 86, 313, 326
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 94, 127
Tsp45I GTSAC 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 344
Tth111I GACNNNGTC 1 cut(s) 230
XceI RCATGY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.