Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004688.1

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Forward (+)

47875 .. 48505

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004688.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgtacctgactccgccggagatttgcaacccggccaagctcaaccgggcgttccgcggcgcggcgttgtcggatgcggtttgggaatcgaagctgccccctaattaccatgatctgcttgatttgctgcctcccaagaggtaccagaacctgtcgaagaaggacatcttttccctgctctcccgcccggtgccttacgacaatggcaataaggtgttatggctggacagggtcaccggaagggtttgcatgtcgatttcagcaaaggccatggctataacagggattgaggatcggcgatactggaattggattcctactgaagaatcaagaacaaagatgtggctcctgtttgttaaggaaggactgtttgttgaggaaggagaggatcgacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

132

Amino Acids

15.37

Weight (kDa)

8.93

Isoelectric Point (pI)

62.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	141, 190
AccII	CGCG	2 cut(s)	57, 62
AciI	CCGC	6 cut(s)	14, 55, 57, 62, 77, 184
AclWI	GGATC	2 cut(s)	300, 396
AcoI	YGGCCR	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	2 cut(s)	5, 143
AfiI	CCNNNNNNNGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	40, 94
AluI	AGCT	2 cut(s)	40, 94
AlwI	GGATC	2 cut(s)	300, 396
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	33, 267
ApeKI	GCWGC	2 cut(s)	94, 127
Asp718I	GGTACC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	3 cut(s)	32, 47, 188
AsuHPI	GGTGA	1 cut(s)	226
BanI	GGYRCC	2 cut(s)	141, 190
BbvI	GCAGC	2 cut(s)	81, 114
BcnI	CCSGG	3 cut(s)	32, 47, 188
BisI	GCNGC	4 cut(s)	58, 63, 95, 128
BlsI	GCNGC	4 cut(s)	59, 64, 96, 129
Bme1390I	CCNGG	3 cut(s)	32, 47, 188
BmiI	GGNNCC	3 cut(s)	143, 192, 347
BmrFI	CCNGG	3 cut(s)	32, 47, 188
BmsI	GCATC	1 cut(s)	64
BpuMI	CCSGG	3 cut(s)	32, 47, 188
BsaJI	CCNNGG	2 cut(s)	55, 270
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	55, 270
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	81, 114
Bsh1236I	CGCG	2 cut(s)	57, 62
BshFI	GGCC	2 cut(s)	35, 269
BshNI	GGYRCC	2 cut(s)	141, 190
BsiSI	CCGG	5 cut(s)	17, 32, 46, 188, 237
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	35, 269
Bsp143I	GATC	3 cut(s)	112, 292, 388
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	6 cut(s)	14, 55, 57, 62, 77, 184
BspANI	GGCC	2 cut(s)	35, 269
BspFNI	CGCG	2 cut(s)	57, 62
BspLI	GGNNCC	3 cut(s)	143, 192, 347
BspPI	GGATC	2 cut(s)	300, 396
BspT107I	GGYRCC	2 cut(s)	141, 190
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	55, 270
BssMI	GATC	3 cut(s)	112, 292, 388
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	369
BstDSI	CCRYGG	2 cut(s)	55, 270
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	2 cut(s)	57, 62
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	115, 295, 391
BstMBI	GATC	3 cut(s)	112, 292, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	30, 45, 186
BstUI	CGCG	2 cut(s)	57, 62
BstV1I	GCAGC	2 cut(s)	81, 114
BsuRI	GGCC	2 cut(s)	35, 269
BtgI	CCRYGG	2 cut(s)	55, 270
BtsCI	GGATG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	62
Cfr42I	CCGCGG	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	4, 142
CviAII	CATG	3 cut(s)	110, 250, 271
CviJI	RGCY	7 cut(s)	35, 40, 94, 223, 269, 275, 346
CviKI_1	RGCY	7 cut(s)	35, 40, 94, 223, 269, 275, 346
CviQI	GTAC	2 cut(s)	4, 142
DpnI	GATC	3 cut(s)	114, 294, 390
DpnII	GATC	3 cut(s)	112, 292, 388
EaeI	YGGCCR	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	113, 253, 274
FaiI	YATR	5 cut(s)	111, 220, 251, 272, 278
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	109, 249, 270
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	4 cut(s)	58, 63, 95, 128
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	58, 63, 95, 128
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	4 cut(s)	58, 63, 95, 128
HaeIII	GGCC	2 cut(s)	35, 269
HapII	CCGG	5 cut(s)	17, 32, 46, 188, 237
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	113, 253, 274
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	4 cut(s)	10, 86, 313, 326
HpaII	CCGG	5 cut(s)	17, 32, 46, 188, 237
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	4 cut(s)	154, 234, 356, 374
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	27, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	113, 253, 274
HspAI	GCGC	1 cut(s)	60
KpnI	GGTACC	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	112, 292, 388
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	81, 114
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	3 cut(s)	114, 294, 390
MboI	GATC	3 cut(s)	112, 292, 388
MboII	GAAGA	2 cut(s)	169, 335
MluCI	AATT	2 cut(s)	103, 307
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	132, 141, 283, 370, 379
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	5 cut(s)	17, 32, 46, 188, 237
MspR9I	CCNGG	3 cut(s)	32, 47, 188
MvnI	CGCG	2 cut(s)	57, 62
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	3 cut(s)	32, 47, 188
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	3 cut(s)	112, 292, 388
NlaIII	CATG	3 cut(s)	113, 253, 274
NlaIV	GGNNCC	3 cut(s)	143, 192, 347
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	86, 313, 326
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	59, 64, 96, 129
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	143, 192, 347
PstNI	CAGNNNCTG	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	2 cut(s)	5, 143
RsaNI	GTAC	2 cut(s)	4, 142
SacII	CCGCGG	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	58, 63, 95, 128
Sau3AI	GATC	3 cut(s)	112, 292, 388
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	32, 47, 188
SetI	ASST	6 cut(s)	9, 42, 96, 143, 153, 216
SfaNI	GCATC	1 cut(s)	64
Sfr303I	CCGCGG	1 cut(s)	58
SgrBI	CCGCGG	1 cut(s)	58
Sse9I	AATT	2 cut(s)	103, 307
SsiI	CCGC	6 cut(s)	14, 55, 57, 62, 77, 184
StyD4I	CCNGG	3 cut(s)	30, 45, 186
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	89, 155, 254, 391
TasI	AATT	2 cut(s)	103, 307
TauI	GCSGC	2 cut(s)	60, 65
TfiI	GAWTC	3 cut(s)	86, 313, 326
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	94, 127
Tsp45I	GTSAC	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	230
XceI	RCATGY	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.