Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001306.1

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Forward (+)

108444 .. 109738

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001306.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgaggggcaaaacgactcctccggagatttgcaacccggccaagctcaaccgggcgttctgcagtgcggcgtcgtcggatgcggtttgggaatcgaagctgccccctaattaccatgatctacttgatttgctgcctcccgagaggtaccagaacctgtcgaagaaggacatctttgccctgctctcccgccccgtgacttacgacgatggcaataaggtgttatggctggacagggtcaccggaagggtttgcatgtcgatttcagcaaaggccatggctataacagggattgaggatcggcgatactggaattggattcctactgaagaatcaagaacaaagatgtggctcctgtttgttgaggaaggagaggatcgacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

128

Amino Acids

14.8

Weight (kDa)

7.69

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	3 cut(s)	68, 83, 190
AclWI	GGATC	2 cut(s)	306, 384
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	149
AluBI	AGCT	2 cut(s)	46, 100
AluI	AGCT	2 cut(s)	46, 100
AlwI	GGATC	2 cut(s)	306, 384
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	39, 273
ApeKI	GCWGC	2 cut(s)	100, 133
Asp718I	GGTACC	1 cut(s)	147
AsuC2I	CCSGG	2 cut(s)	38, 53
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	87, 120
BccI	CCATC	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	38, 53
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	3 cut(s)	69, 101, 134
BlsI	GCNGC	3 cut(s)	70, 102, 135
Bme1390I	CCNGG	2 cut(s)	38, 53
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	149, 353
BmrFI	CCNGG	2 cut(s)	38, 53
BmsI	GCATC	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	38, 53
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	22, 242
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	87, 120
BshFI	GGCC	2 cut(s)	41, 275
BshNI	GGYRCC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	4 cut(s)	23, 38, 52, 243
BsnI	GGCC	2 cut(s)	41, 275
BsoBI	CYCGRG	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	118, 298, 376
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	3 cut(s)	68, 83, 190
BspANI	GGCC	2 cut(s)	41, 275
BspEI	TCCGGA	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	149, 353
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	2 cut(s)	306, 384
BspT107I	GGYRCC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	118, 298, 376
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	121, 301, 379
BstMBI	GATC	3 cut(s)	118, 298, 376
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	36, 51
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	87, 120
BsuRI	GGCC	2 cut(s)	41, 275
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	157
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	116, 256, 277
CviJI	RGCY	7 cut(s)	41, 46, 100, 229, 275, 281, 352
CviKI_1	RGCY	7 cut(s)	41, 46, 100, 229, 275, 281, 352
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	3 cut(s)	120, 300, 378
DpnII	GATC	3 cut(s)	118, 298, 376
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	119, 259, 280
FaiI	YATR	5 cut(s)	117, 226, 257, 278, 284
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	3 cut(s)	115, 255, 276
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	69, 101, 134
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	69, 101, 134
GluI	GCNGC	3 cut(s)	69, 101, 134
HaeIII	GGCC	2 cut(s)	41, 275
HapII	CCGG	4 cut(s)	23, 38, 52, 243
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	119, 259, 280
HinfI	GANTC	4 cut(s)	16, 92, 319, 332
HpaII	CCGG	4 cut(s)	23, 38, 52, 243
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	23, 140, 336
Hpy99I	CGWCG	4 cut(s)	76, 79, 209, 384
HpyAV	CCTTC	3 cut(s)	160, 240, 362
HpyCH4V	TGCA	3 cut(s)	33, 63, 255
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	119, 259, 280
Kpn2I	TCCGGA	1 cut(s)	22
KpnI	GGTACC	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	118, 298, 376
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	2 cut(s)	87, 120
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	196, 238
MalI	GATC	3 cut(s)	120, 300, 378
MboI	GATC	3 cut(s)	118, 298, 376
MboII	GAAGA	2 cut(s)	175, 341
MluCI	AATT	2 cut(s)	109, 313
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	30, 138, 147, 289, 358, 367
MroI	TCCGGA	1 cut(s)	22
MspI	CCGG	4 cut(s)	23, 38, 52, 243
MspR9I	CCNGG	2 cut(s)	38, 53
NciI	CCSGG	2 cut(s)	38, 53
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	118, 298, 376
NlaIII	CATG	3 cut(s)	119, 259, 280
NlaIV	GGNNCC	2 cut(s)	149, 353
NmuCI	GTSAC	2 cut(s)	196, 238
NspI	RCATGY	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	92, 319, 332
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	70, 102, 135
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PspEI	GGTNACC	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	149, 353
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	3 cut(s)	69, 101, 134
Sau3AI	GATC	3 cut(s)	118, 298, 376
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	38, 53
SetI	ASST	5 cut(s)	48, 102, 149, 159, 222
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	61
Sse9I	AATT	2 cut(s)	109, 313
SsiI	CCGC	3 cut(s)	68, 83, 190
StyD4I	CCNGG	2 cut(s)	36, 51
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	4 cut(s)	95, 161, 260, 379
TasI	AATT	2 cut(s)	109, 313
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	92, 319, 332
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	196, 238
TseI	GCWGC	2 cut(s)	100, 133
Tsp45I	GTSAC	2 cut(s)	196, 238
TspRI	CASTG	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.