Rmu_sc0003693.1_g000014

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
OG0006335
Physical Location & Seq
Reverse (-)
58651 .. 59137
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000014.1.cds

Sequence Viewer

Length: 333 bp
atgtacctgactccgccggagatttgcaacccggccaagctcaaactggcgttcggcggcgcggcgtcgtcggatgcagtttgggaatcaaagctgccccctaattaccatgatctgcttgatttgctgcctcccgagaggtaccagaacctgtcgaaggacatcttttccctgctctcccgccccgtgcctttcgacgatggcaataaggtgttatggctggacagggtcaccggaagggtttgcatgtctatttctgcaaaggccatggctataacagggattgaggatcggcgatactggaattggattcctactgaagaatcaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

110

Amino Acids

12.48

Weight (kDa)

5.76

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 14, 57, 62, 181
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 2 cut(s) 5, 143
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 40, 94
AluI AGCT 2 cut(s) 40, 94
AlwI GGATC 1 cut(s) 297
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 33, 264
ApeKI GCWGC 2 cut(s) 94, 127
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 134
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 81, 114
BccI CCATC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 32
BisI GCNGC 4 cut(s) 58, 63, 95, 128
BlsI GCNGC 4 cut(s) 59, 64, 96, 129
Bme1390I CCNGG 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 51, 305
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 51, 305
BseXI GCAGC 2 cut(s) 81, 114
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 35, 266
BshNI GGYRCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 17, 32, 234
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 2 cut(s) 35, 266
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 112, 289
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 4 cut(s) 14, 57, 62, 181
BspANI GGCC 2 cut(s) 35, 266
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 51, 305
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 112, 289
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 115, 292
BstMBI GATC 2 cut(s) 112, 289
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 250
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 81, 114
BsuRI GGCC 2 cut(s) 35, 266
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 1 cut(s) 62
CseI GACGC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 4, 142
CviAII CATG 3 cut(s) 110, 247, 268
CviJI RGCY 6 cut(s) 35, 40, 94, 220, 266, 272
CviKI_1 RGCY 6 cut(s) 35, 40, 94, 220, 266, 272
CviQI GTAC 2 cut(s) 4, 142
DpnI GATC 2 cut(s) 114, 291
DpnII GATC 2 cut(s) 112, 289
EaeI YGGCCR 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 3 cut(s) 113, 250, 271
FaiI YATR 5 cut(s) 111, 217, 248, 269, 275
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 3 cut(s) 109, 246, 267
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 58, 63, 95, 128
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 4 cut(s) 58, 63, 95, 128
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 58, 63, 95, 128
HaeIII GGCC 2 cut(s) 35, 266
HapII CCGG 3 cut(s) 17, 32, 234
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 3 cut(s) 113, 250, 271
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 4 cut(s) 10, 86, 310, 323
HpaII CCGG 3 cut(s) 17, 32, 234
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 134
Hpy99I CGWCG 3 cut(s) 70, 73, 200
HpyAV CCTTC 2 cut(s) 151, 231
HpyCH4V TGCA 4 cut(s) 27, 77, 246, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 113, 250, 271
HspAI GCGC 1 cut(s) 60
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 112, 289
Lsp1109I GCAGC 2 cut(s) 81, 114
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 114, 291
MboI GATC 2 cut(s) 112, 289
MboII GAAGA 1 cut(s) 332
MluCI AATT 2 cut(s) 103, 304
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 132, 141, 280
MspI CCGG 3 cut(s) 17, 32, 234
MspR9I CCNGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 32
NcoI CCATGG 1 cut(s) 267
NdeII GATC 2 cut(s) 112, 289
NlaIII CATG 3 cut(s) 113, 250, 271
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 250
PfeI GAWTC 3 cut(s) 86, 310, 323
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 4 cut(s) 59, 64, 96, 129
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 5, 143
RsaNI GTAC 2 cut(s) 4, 142
SatI GCNGC 4 cut(s) 58, 63, 95, 128
Sau3AI GATC 2 cut(s) 112, 289
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 32
SetI ASST 6 cut(s) 9, 42, 96, 143, 153, 213
SfaNI GCATC 1 cut(s) 64
Sse9I AATT 2 cut(s) 103, 304
SsiI CCGC 4 cut(s) 14, 57, 62, 181
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 267
TaqI TCGA 2 cut(s) 155, 195
TasI AATT 2 cut(s) 103, 304
TauI GCSGC 2 cut(s) 60, 65
TfiI GAWTC 3 cut(s) 86, 310, 323
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 94, 127
Tsp45I GTSAC 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 155
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.