Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Reverse (-)

17349392 .. 17354048

Gene Structure 4657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGGCGTCGCTCTCGAACTTGACGGAGGGGGCGAACGGGTCGGGTCTGGGTCCGGGTCTGGGCGACATCCCGGAGAACTGCGTCGCCTGCGTTTTCATGTACCTGACTCCGCCGGAGATTTGCAACCTCGCCAGGCTCAACCGGGCGTTCCGCGGCGCGGCGTCGTCGGATGCGGTTTGGGAATCGAAGCTGCCCCCTAATTACCATGATCTGCTTGATTTGCTGCCTCCCGAGAGGTACCAGAACCTGTCGAAGAAGGACATCTTTGCCCTCCTCTCCCGCCCCGTGCCTTACGACGATGGCAATAAGGTATTGTGGCTTGACAGGGTGACCGGAAGGGTTTGCATGTCGATTTCTGCAAAGGCCATGGCTATAACAGGGATTGAGGATCGGCGATACTGGAACTGGATTCCTACAGAAGAATCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

5.39

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 62	2.1e-06	F-box-like
PP2	PF14299	115 - 144	2e-06	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	2 cut(s)	156, 161
AciI	CCGC	6 cut(s)	113, 154, 156, 161, 176, 283
AclWI	GGATC	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	8, 164
AfaI	GTAC	2 cut(s)	104, 242
AfiI	CCNNNNNNNGG	2 cut(s)	62, 160
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	193, 226
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	3 cut(s)	57, 74, 146
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	180, 213
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	3 cut(s)	57, 74, 146
BfmI	CTRYAG	1 cut(s)	417
BisI	GCNGC	4 cut(s)	157, 162, 194, 227
BlsI	GCNGC	4 cut(s)	158, 163, 195, 228
Bme1390I	CCNGG	4 cut(s)	57, 74, 136, 146
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 242
BmrFI	CCNGG	4 cut(s)	57, 74, 136, 146
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	3 cut(s)	57, 74, 146
BsaHI	GRCGYC	2 cut(s)	8, 164
BsaJI	CCNNGG	2 cut(s)	154, 369
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 160
Bse1I	ACTGG	2 cut(s)	407, 413
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	154, 369
BseGI	GGATG	2 cut(s)	69, 178
BseLI	CCNNNNNNNGG	2 cut(s)	62, 160
BseNI	ACTGG	2 cut(s)	407, 413
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	180, 213
Bsh1236I	CGCG	2 cut(s)	156, 161
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	56, 74, 116, 145, 336
BslI	CCNNNNNNNGG	2 cut(s)	62, 160
BsnI	GGCC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	211, 391
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	6 cut(s)	113, 154, 156, 161, 176, 283
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	2 cut(s)	156, 161
BspLI	GGNNCC	2 cut(s)	54, 242
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	407, 413
BssECI	CCNNGG	2 cut(s)	154, 369
BssMI	GATC	2 cut(s)	211, 391
BssNI	GRCGYC	2 cut(s)	8, 164
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	136
BstACI	GRCGYC	2 cut(s)	8, 164
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	154, 369
BstEII	GGTNACC	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	69, 178
BstFNI	CGCG	2 cut(s)	156, 161
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	214, 394
BstMBI	GATC	2 cut(s)	211, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 223
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	55, 72, 134, 144
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	156, 161
BstV1I	GCAGC	2 cut(s)	180, 213
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	2 cut(s)	154, 369
BtsCI	GGATG	2 cut(s)	69, 178
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	2 cut(s)	73, 153
Csp6I	GTAC	2 cut(s)	103, 241
CviAII	CATG	4 cut(s)	100, 209, 349, 370
CviJI	RGCY	5 cut(s)	139, 193, 322, 368, 374
CviKI_1	RGCY	5 cut(s)	139, 193, 322, 368, 374
CviQI	GTAC	2 cut(s)	103, 241
DpnI	GATC	2 cut(s)	213, 393
DpnII	GATC	2 cut(s)	211, 391
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	103, 212, 352, 373
FaiI	YATR	5 cut(s)	101, 210, 350, 371, 377
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	99, 208, 348, 369
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	157, 162, 194, 227
FokI	GGATG	2 cut(s)	56, 185
Fsp4HI	GCNGC	4 cut(s)	157, 162, 194, 227
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	157, 162, 194, 227
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	5 cut(s)	56, 74, 116, 145, 336
HgaI	GACGC	2 cut(s)	73, 153
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	8, 164
Hin1II	CATG	4 cut(s)	103, 212, 352, 373
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	109, 185, 412, 425
HpaII	CCGG	5 cut(s)	56, 74, 116, 145, 336
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	16, 233
Hpy99I	CGWCG	5 cut(s)	13, 89, 169, 172, 302
HpyAV	CCTTC	2 cut(s)	253, 333
HpyCH4V	TGCA	3 cut(s)	126, 348, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 223
Hsp92I	GRCGYC	2 cut(s)	8, 164
Hsp92II	CATG	4 cut(s)	103, 212, 352, 373
HspAI	GCGC	1 cut(s)	159
KpnI	GGTACC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	211, 391
Lsp1109I	GCAGC	2 cut(s)	180, 213
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	213, 393
MboI	GATC	2 cut(s)	211, 391
MboII	GAAGA	2 cut(s)	268, 434
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	22, 140, 231, 240, 284, 287, 382
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	5 cut(s)	56, 74, 116, 145, 336
MspR9I	CCNGG	4 cut(s)	57, 74, 136, 146
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	156, 161
MwoI	GCNNNNNNNGC	2 cut(s)	90, 223
NciI	CCSGG	3 cut(s)	57, 74, 146
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	211, 391
NlaIII	CATG	4 cut(s)	103, 212, 352, 373
NlaIV	GGNNCC	2 cut(s)	54, 242
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	185, 412, 425
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	4 cut(s)	158, 163, 195, 228
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	54, 242
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	250
RsaI	GTAC	2 cut(s)	104, 242
RsaNI	GTAC	2 cut(s)	103, 241
SacII	CCGCGG	1 cut(s)	157
SatI	GCNGC	4 cut(s)	157, 162, 194, 227
Sau3AI	GATC	2 cut(s)	211, 391
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	4 cut(s)	57, 74, 136, 146
SetI	ASST	7 cut(s)	108, 132, 195, 242, 252, 315, 434
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	6 cut(s)	113, 154, 156, 161, 176, 283
StyD4I	CCNGG	4 cut(s)	55, 72, 134, 144
StyI	CCWWGG	1 cut(s)	369
TaqI	TCGA	4 cut(s)	17, 188, 254, 353
TasI	AATT	1 cut(s)	202
TauI	GCSGC	2 cut(s)	159, 164
TfiI	GAWTC	3 cut(s)	185, 412, 425
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	193, 226
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.