Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Reverse (-)

11398968 .. 11403013

Gene Structure 4046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGCGTCGCTCTCCAACTTGACGGAGGGGGCGAACGGGTTGGGTCTTGGTCCGGGTCTGGGCGACATCCCGGAGAGCTGCGTGGCTTGTGTTTTCATGTACCTGACTCCGCCGGAGATTTGCAACCTCGCCAGGCTCAACCGGGCTTTCCGCGGTGCGGCGTCGTCTGACGCCGTTTGGGAATCGAAGCTGCCCCTGAATTACCATGATCTGCTTGATTTGCTGCCGCCGGAGAGGTACCGGAGCCTGTCCAAGAAGGACATCTTTGCTCTGCTCTCCCGGCCTGTGCCGTATGACGATGGCAATAAGGTGTTGTGGTTGGACAGGGTCACCGGAAGGGTTTGCATGTCGATTTCGGCCAAGGCCATGGCTATAACAGGGATTGAGGATCGGCGGTACTGGAATTGGATTGCTACTGAAGAATCAAGGTTTCATGTTGTAGCTTATTTACAACAGATATGGTGGTTTGAGGTGGATGGGGTTGTAAAGTTCCCTTTCCCTGCGGATATCTACACCCTATCTTTCAGGCTTCACATTGGAAGATTTGCAAAAAGGTTGGGACGGCGTGTTTGCAACTTTGAGCACACCCATGGGTGGGATATAAAGCCAGTACGATTTGAGTTGTGGACTCCAGATGGTCAGCAAGCATCATACGAATGCTGCTTGGATCAAATTGAACATGATGATGCCTATGGCAATTCAAAGCGTGGATGCTGGGTCGATTACAAGGTTGGTGAGTTTATTGTCACTGATGCAGATCCTGTGACCGAAGTTAGATTTTCCATGAAACAGATTGATTGCACACATTCCAAAGGTGGGCTATGCGTCGATTCTGTTTTTATTATCCCCAGTAATTTGAAAGAGCGCAAAAGAAAAGGGGTGTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

298

Amino Acids

33.75

Weight (kDa)

7.02

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 62	5.2e-06	F-box-like
PP2	PF14299	115 - 284	9.2e-39	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	113, 154, 156, 161, 230, 397, 506
AclWI	GGATC	3 cut(s)	399, 678, 755
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	3 cut(s)	8, 164, 174
AfaI	GTAC	4 cut(s)	104, 242, 401, 615
AfiI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
AgsI	TTSAA	4 cut(s)	680, 705, 862, 889
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	81, 193, 446
AluI	AGCT	3 cut(s)	81, 193, 446
Alw21I	GWGCWC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	399, 678, 755
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	284, 360, 366
ApeKI	GCWGC	4 cut(s)	81, 193, 226, 663
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	4 cut(s)	57, 74, 146, 283
AsuHPI	GGTGA	2 cut(s)	325, 749
AvaII	GGWCC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	68, 180, 213, 650
BccI	CCATC	3 cut(s)	296, 473, 632
BceAI	ACGGC	3 cut(s)	161, 277, 581
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	4 cut(s)	57, 74, 146, 283
BisI	GCNGC	6 cut(s)	82, 162, 194, 227, 230, 664
BlsI	GCNGC	6 cut(s)	83, 163, 195, 228, 231, 665
Bme1390I	CCNGG	5 cut(s)	57, 74, 136, 146, 283
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	242, 248
BmrFI	CCNGG	5 cut(s)	57, 74, 136, 146, 283
BmrI	ACTGGG	1 cut(s)	846
BmsI	GCATC	4 cut(s)	659, 679, 704, 745
BmuI	ACTGGG	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	4 cut(s)	57, 74, 146, 283
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	3 cut(s)	8, 164, 174
BsaJI	CCNNGG	4 cut(s)	154, 363, 369, 592
BsaWI	WCCGGW	2 cut(s)	243, 335
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
Bse1I	ACTGG	3 cut(s)	407, 611, 852
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	4 cut(s)	154, 363, 369, 592
BseGI	GGATG	3 cut(s)	69, 484, 719
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
BseNI	ACTGG	3 cut(s)	407, 611, 852
BseXI	GCAGC	4 cut(s)	68, 180, 213, 650
BseYI	CCCAGC	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	286, 362, 368
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	8 cut(s)	56, 74, 116, 145, 233, 244, 283, 336
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	5 cut(s)	62, 160, 597, 598, 819
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	286, 362, 368
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	211, 391, 670, 760
Bsp19I	CCATGG	2 cut(s)	369, 592
BspACI	CCGC	7 cut(s)	113, 154, 156, 161, 230, 397, 506
BspANI	GGCC	3 cut(s)	286, 362, 368
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	242, 248
BspPI	GGATC	3 cut(s)	399, 678, 755
BspT107I	GGYRCC	1 cut(s)	240
BsrI	ACTGG	3 cut(s)	407, 611, 852
BssECI	CCNNGG	4 cut(s)	154, 363, 369, 592
BssMI	GATC	4 cut(s)	211, 391, 670, 760
BssNI	GRCGYC	3 cut(s)	8, 164, 174
BssT1I	CCWWGG	3 cut(s)	363, 369, 592
Bst2UI	CCWGG	1 cut(s)	136
BstACI	GRCGYC	3 cut(s)	8, 164, 174
BstC8I	GCNNGC	1 cut(s)	648
BstDSI	CCRYGG	3 cut(s)	154, 369, 592
BstEII	GGTNACC	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	69, 484, 719
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	4 cut(s)	214, 394, 673, 763
BstMBI	GATC	4 cut(s)	211, 391, 670, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 283
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	5 cut(s)	55, 72, 134, 144, 281
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	68, 180, 213, 650
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	286, 362, 368
BtgI	CCRYGG	3 cut(s)	154, 369, 592
BtsCI	GGATG	3 cut(s)	69, 484, 719
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	3 cut(s)	153, 182, 817
Csp6I	GTAC	4 cut(s)	103, 241, 400, 614
CviAII	CATG	8 cut(s)	100, 209, 349, 370, 437, 593, 683, 787
CviQI	GTAC	4 cut(s)	103, 241, 400, 614
DpnI	GATC	4 cut(s)	213, 393, 672, 762
DpnII	GATC	4 cut(s)	211, 391, 670, 760
EaeI	YGGCCR	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	363, 369, 592
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	441
Eco91I	GGTNACC	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	3 cut(s)	363, 369, 592
ErhI	CCWWGG	3 cut(s)	363, 369, 592
FaeI	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	8 cut(s)	99, 208, 348, 369, 436, 592, 682, 786
Fnu4HI	GCNGC	6 cut(s)	82, 162, 194, 227, 230, 664
FokI	GGATG	3 cut(s)	56, 491, 726
Fsp4HI	GCNGC	6 cut(s)	82, 162, 194, 227, 230, 664
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	6 cut(s)	82, 162, 194, 227, 230, 664
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	286, 362, 368
HapII	CCGG	8 cut(s)	56, 74, 116, 145, 233, 244, 283, 336
HgaI	GACGC	3 cut(s)	153, 182, 817
HhaI	GCGC	1 cut(s)	870
Hin1I	GRCGYC	3 cut(s)	8, 164, 174
Hin1II	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HinfI	GANTC	5 cut(s)	109, 185, 425, 631, 833
HpaII	CCGG	8 cut(s)	56, 74, 116, 145, 233, 244, 283, 336
HphI	GGTGA	2 cut(s)	325, 749
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	3 cut(s)	13, 169, 833
HpyAV	CCTTC	2 cut(s)	253, 333
HpyCH4V	TGCA	6 cut(s)	126, 348, 551, 576, 758, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 283
Hsp92I	GRCGYC	3 cut(s)	8, 164, 174
Hsp92II	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
HspAI	GCGC	1 cut(s)	868
KpnI	GGTACC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	211, 391, 670, 760
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	4 cut(s)	68, 180, 213, 650
LweI	GCATC	4 cut(s)	659, 679, 704, 745
MaeIII	GTNAC	3 cut(s)	331, 748, 766
MalI	GATC	4 cut(s)	213, 393, 672, 762
MboI	GATC	4 cut(s)	211, 391, 670, 760
MboII	GAAGA	2 cut(s)	434, 555
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	202, 406, 675, 700, 856
MlyI	GAGTC	2 cut(s)	103, 625
MmeI	TCCRAC	2 cut(s)	42, 303
MnlI	CCTC	5 cut(s)	22, 140, 231, 382, 466
MslI	CAYNNNNRTG	3 cut(s)	591, 658, 687
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	8 cut(s)	56, 74, 116, 145, 233, 244, 283, 336
MspR9I	CCNGG	5 cut(s)	57, 74, 136, 146, 283
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	223, 283
NciI	CCSGG	4 cut(s)	57, 74, 146, 283
NcoI	CCATGG	2 cut(s)	369, 592
NdeII	GATC	4 cut(s)	211, 391, 670, 760
NlaIII	CATG	8 cut(s)	103, 212, 352, 373, 440, 596, 686, 790
NlaIV	GGNNCC	2 cut(s)	242, 248
NmuCI	GTSAC	3 cut(s)	331, 748, 766
NspI	RCATGY	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	3 cut(s)	185, 425, 833
PflFI	GACNNNGTC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	6 cut(s)	83, 163, 195, 228, 231, 665
PleI	GAGTC	2 cut(s)	103, 625
PpsI	GAGTC	2 cut(s)	103, 625
Psp6I	CCWGG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	242, 248
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	4 cut(s)	104, 242, 401, 615
RsaNI	GTAC	4 cut(s)	103, 241, 400, 614
RseI	CAYNNNNRTG	3 cut(s)	591, 658, 687
SacII	CCGCGG	1 cut(s)	157
SatI	GCNGC	6 cut(s)	82, 162, 194, 227, 230, 664
Sau3AI	GATC	4 cut(s)	211, 391, 670, 760
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	103, 625
ScrFI	CCNGG	5 cut(s)	57, 74, 136, 146, 283
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	4 cut(s)	659, 679, 704, 745
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	3 cut(s)	591, 658, 687
Sse9I	AATT	5 cut(s)	202, 406, 675, 700, 856
SsiI	CCGC	7 cut(s)	113, 154, 156, 161, 230, 397, 506
StyD4I	CCNGG	5 cut(s)	55, 72, 134, 144, 281
StyI	CCWWGG	3 cut(s)	363, 369, 592
TaqI	TCGA	4 cut(s)	188, 353, 723, 831
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	5 cut(s)	202, 406, 675, 700, 856
TauI	GCSGC	2 cut(s)	164, 232
TfiI	GAWTC	3 cut(s)	185, 425, 833
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	3 cut(s)	331, 748, 766
TseI	GCWGC	4 cut(s)	81, 193, 226, 663
Tsp45I	GTSAC	3 cut(s)	331, 748, 766
TspDTI	ATGAA	3 cut(s)	88, 425, 803
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	757
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.