Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Forward (+)

32403543 .. 32407240

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGGGCGTCGCTCTCGAACTTGACGGAGGGGGCGAACGGGTCGGGTCTGGGTCCGGGTCTGGGCGACATCCCGGAGAACTGCGTCGCCTGCGTTTTCATGTACCTGACTCCGCCGGAGATTTGCAACCTGGCCAGGCTCAACCGGGCGTTCCGCGGCGCGGCGTCGTCGGATGCGGTTTGGGAATCGAAGCTGCCCCCTAATTACCATGATCTGCTTGATTTGCTGCCTCCCGAGAGGTACCAGAACCTGTCGAAGAAGGACATCTTTGCCCTGCTCTCCCGCCCCGTGCCTTACGACGATGGCAATAAGGAGACTATATCCCTGTCTTTAAGGCTCGTTTTCTTATTGGTTACCACAACTGTAGAAGGATTTTCAATTGAGACCTCACGAGAGAAGCGGTTTCATGTTGTAGCTTATTTACAACAGATATGGTGGTATGAGGTGGATGGGGTTGTGAAGTTCCCTTTTCCTGCGGATATCTACACCCTGTCTTTCAGGCTTCACATTGGAAGATTTGCAAAAAGGTTGGGACGGCGTGTTTGCAACTTTGAGCACACCCATGGTTGGGATATAAAGCCAGTACGATTTGAGTTGCGGACTCCAGATGGTCAGCAAGCATCATATGAGTGCTGCTTGGATCAAATTGAACATGACGATGCCTATGGCAGTCATAAGCGTGGATGCTGGGTTGATTACAAGGTTGGTGAGTTTATCGTCACTGATGCAGATCCTGTGACCGAAGTTAGATTTTCCATGAAACAGATTGATTGCACACATTCCAAAGGTGGGCTATGCGTCGATTCTGTTTTTATTATCCCTAGTAATTTGAAAGAGCGCAAAAGAAAAGGGGTTTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

288

Amino Acids

32.48

Weight (kDa)

6.71

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 62	6.8e-06	F-box-like
PP2	PF14299	116 - 274	6.7e-26	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	2 cut(s)	156, 161
AciI	CCGC	9 cut(s)	113, 154, 156, 161, 176, 283, 400, 476, 598
AclWI	GGATC	2 cut(s)	648, 725
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	8, 164
AfaI	GTAC	3 cut(s)	104, 242, 585
AfiI	CCNNNNNNNGG	5 cut(s)	62, 160, 567, 568, 789
AgsI	TTSAA	4 cut(s)	378, 650, 832, 859
AjnI	CCWGG	2 cut(s)	129, 134
AluBI	AGCT	2 cut(s)	193, 416
AluI	AGCT	2 cut(s)	193, 416
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	308, 377
AlwI	GGATC	2 cut(s)	648, 725
AlwNI	CAGNNNCTG	2 cut(s)	250, 734
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	193, 226, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	161, 840
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	3 cut(s)	57, 74, 146
AsuHPI	GGTGA	1 cut(s)	719
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	180, 213, 620
BccI	CCATC	3 cut(s)	296, 443, 602
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	2 cut(s)	131, 136
BcnI	CCSGG	3 cut(s)	57, 74, 146
BcoDI	GTCTC	2 cut(s)	308, 377
BfaI	CTAG	1 cut(s)	822
BfmI	CTRYAG	1 cut(s)	363
BisI	GCNGC	5 cut(s)	157, 162, 194, 227, 634
BlsI	GCNGC	5 cut(s)	158, 163, 195, 228, 635
Bme1390I	CCNGG	5 cut(s)	57, 74, 131, 136, 146
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 242
BmrFI	CCNGG	5 cut(s)	57, 74, 131, 136, 146
BmsI	GCATC	5 cut(s)	163, 629, 649, 674, 715
BpmI	CTGGAG	1 cut(s)	588
BpuMI	CCSGG	3 cut(s)	57, 74, 146
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	8, 164
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	154, 562
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 160, 567, 568, 789
Bse1I	ACTGG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	131, 136
BseDI	CCNNGG	2 cut(s)	154, 562
BseGI	GGATG	4 cut(s)	69, 178, 454, 689
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	5 cut(s)	62, 160, 567, 568, 789
BseNI	ACTGG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	180, 213, 620
BseYI	CCCAGC	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	156, 161
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	56, 74, 116, 145
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	5 cut(s)	62, 160, 567, 568, 789
BsmAI	GTCTC	2 cut(s)	308, 377
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	211, 640, 730
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	9 cut(s)	113, 154, 156, 161, 176, 283, 400, 476, 598
BspANI	GGCC	1 cut(s)	134
BspFNI	CGCG	2 cut(s)	156, 161
BspLI	GGNNCC	2 cut(s)	54, 242
BspPI	GGATC	2 cut(s)	648, 725
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	154, 562
BssMI	GATC	3 cut(s)	211, 640, 730
BssNI	GRCGYC	2 cut(s)	8, 164
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	131, 136
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	2 cut(s)	8, 164
BstC8I	GCNNGC	2 cut(s)	91, 618
BstDSI	CCRYGG	2 cut(s)	154, 562
BstEII	GGTNACC	1 cut(s)	352
BstF5I	GGATG	4 cut(s)	69, 178, 454, 689
BstFNI	CGCG	2 cut(s)	156, 161
BstHHI	GCGC	2 cut(s)	161, 840
BstKTI	GATC	3 cut(s)	214, 643, 733
BstMAI	GTCTC	2 cut(s)	308, 377
BstMBI	GATC	3 cut(s)	211, 640, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 223
BstNI	CCWGG	2 cut(s)	131, 136
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	5 cut(s)	55, 72, 129, 134, 144
BstSFI	CTRYAG	1 cut(s)	363
BstUI	CGCG	2 cut(s)	156, 161
BstV1I	GCAGC	3 cut(s)	180, 213, 620
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	2 cut(s)	154, 562
BtsCI	GGATG	4 cut(s)	69, 178, 454, 689
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	91, 618
CaiI	CAGNNNCTG	2 cut(s)	250, 734
CfoI	GCGC	2 cut(s)	161, 840
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	3 cut(s)	73, 153, 787
Csp6I	GTAC	3 cut(s)	103, 241, 584
CviAII	CATG	6 cut(s)	100, 209, 407, 563, 653, 757
CviJI	RGCY	8 cut(s)	134, 139, 193, 337, 416, 502, 580, 793
CviKI_1	RGCY	8 cut(s)	134, 139, 193, 337, 416, 502, 580, 793
CviQI	GTAC	3 cut(s)	103, 241, 584
DpnI	GATC	3 cut(s)	213, 642, 732
DpnII	GATC	3 cut(s)	211, 640, 730
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	562
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	129, 134
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	6 cut(s)	103, 212, 410, 566, 656, 760
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	6 cut(s)	99, 208, 406, 562, 652, 756
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	157, 162, 194, 227, 634
FokI	GGATG	4 cut(s)	56, 185, 461, 696
Fsp4HI	GCNGC	5 cut(s)	157, 162, 194, 227, 634
FspBI	CTAG	1 cut(s)	822
GlaI	GCGC	2 cut(s)	160, 839
GluI	GCNGC	5 cut(s)	157, 162, 194, 227, 634
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	4 cut(s)	56, 74, 116, 145
HgaI	GACGC	3 cut(s)	73, 153, 787
HhaI	GCGC	2 cut(s)	161, 840
Hin1I	GRCGYC	2 cut(s)	8, 164
Hin1II	CATG	6 cut(s)	103, 212, 410, 566, 656, 760
Hin6I	GCGC	2 cut(s)	159, 838
HinP1I	GCGC	2 cut(s)	159, 838
HinfI	GANTC	4 cut(s)	109, 185, 601, 803
HpaII	CCGG	4 cut(s)	56, 74, 116, 145
HphI	GGTGA	1 cut(s)	719
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	4 cut(s)	16, 233, 390, 605
Hpy99I	CGWCG	6 cut(s)	13, 89, 169, 172, 302, 803
HpyAV	CCTTC	2 cut(s)	253, 362
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	126, 521, 546, 728, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 223
Hsp92I	GRCGYC	2 cut(s)	8, 164
Hsp92II	CATG	6 cut(s)	103, 212, 410, 566, 656, 760
HspAI	GCGC	2 cut(s)	159, 838
KpnI	GGTACC	1 cut(s)	244
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	211, 640, 730
Lsp1109I	GCAGC	3 cut(s)	180, 213, 620
LweI	GCATC	5 cut(s)	163, 629, 649, 674, 715
MaeI	CTAG	1 cut(s)	822
MaeIII	GTNAC	3 cut(s)	352, 718, 736
MalI	GATC	3 cut(s)	213, 642, 732
MboI	GATC	3 cut(s)	211, 640, 730
MboII	GAAGA	2 cut(s)	268, 525
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	4 cut(s)	202, 378, 645, 826
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	103, 595
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	22, 231, 240, 397, 436
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	4 cut(s)	561, 628, 657, 678
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	4 cut(s)	56, 74, 116, 145
MspR9I	CCNGG	5 cut(s)	57, 74, 131, 136, 146
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	131, 136
MvnI	CGCG	2 cut(s)	156, 161
MwoI	GCNNNNNNNGC	2 cut(s)	90, 223
NciI	CCSGG	3 cut(s)	57, 74, 146
NcoI	CCATGG	1 cut(s)	562
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	3 cut(s)	211, 640, 730
NlaIII	CATG	6 cut(s)	103, 212, 410, 566, 656, 760
NlaIV	GGNNCC	2 cut(s)	54, 242
NmuCI	GTSAC	2 cut(s)	718, 736
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	185, 803
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	5 cut(s)	158, 163, 195, 228, 635
PleI	GAGTC	2 cut(s)	103, 595
PpsI	GAGTC	2 cut(s)	103, 595
Psp6I	CCWGG	2 cut(s)	129, 134
PspEI	GGTNACC	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	2 cut(s)	129, 134
PspN4I	GGNNCC	2 cut(s)	54, 242
PspPI	GGNCC	1 cut(s)	53
PstNI	CAGNNNCTG	2 cut(s)	250, 734
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	3 cut(s)	104, 242, 585
RsaNI	GTAC	3 cut(s)	103, 241, 584
RseI	CAYNNNNRTG	4 cut(s)	561, 628, 657, 678
SacII	CCGCGG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	5 cut(s)	157, 162, 194, 227, 634
Sau3AI	GATC	3 cut(s)	211, 640, 730
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	103, 595
ScrFI	CCNGG	5 cut(s)	57, 74, 131, 136, 146
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	5 cut(s)	163, 629, 649, 674, 715
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	4 cut(s)	561, 628, 657, 678
Sse9I	AATT	4 cut(s)	202, 378, 645, 826
SsiI	CCGC	9 cut(s)	113, 154, 156, 161, 176, 283, 400, 476, 598
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	5 cut(s)	55, 72, 129, 134, 144
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	4 cut(s)	17, 188, 254, 801
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	4 cut(s)	202, 378, 645, 826
TauI	GCSGC	2 cut(s)	159, 164
TfiI	GAWTC	2 cut(s)	185, 803
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	2 cut(s)	718, 736
TseI	GCWGC	3 cut(s)	193, 226, 633
Tsp45I	GTSAC	2 cut(s)	718, 736
TspDTI	ATGAA	3 cut(s)	88, 395, 773
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	53
XspI	CTAG	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.