Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006335

Physical Location & Seq

Genomic Coordinates Reverse (-)

15132976 .. 15136866

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1096700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGCTTCGCTCTCGAACCTGACGGAGGGGGCGAACGGGTCTGGTCATGGACCGGGTCTTGGCGACATACCGGAGAGCTGTGTGGCCTGCGTCTTCATGTACCTGACTCCGCCTGAGATTTGCAATCTTGCGAGGCTCAACAGGGCGTTTCGCGGTGCGGCGTCGTCTGATTCGGTTTGGGAATCCAAGTTGCCCCCAAATTACCATGATCTACTCGATTTGGTGCCTCCTCAGAGGTACCAAAATCTCTCTAAAAAGGACATCTTTGCTATGCTCTCCCGCCCTGTACCCTTCGACGATGGCAATAAGGTAGTGTGGATAGACAGGGTCACAGGGAGGGTTTGCATGTCGGTTTCTGCCAAGGGGATGGCGATAACTGGGATCGAAGATAGGCGATACTGGAACTGGATTCCTACTGAAGAATCTAGGTTTCAGGTGGTGGCGTATTTACAGCAAATATGGTGGTTTGAAGTAGATGGGGTGGTGAAGTTCCCATTTCCTGCTGATATCTACACTTTGTCTTTCAGGCTTCACATTGGAAGATTCTCAAAAAGATTGGGACGACGTGTCTGCAATTTTGAGCACACCCATGGTTGGGATTTAAAGCCCATGCGATTTGAGTTGTCGACTTCAGATGGACAGCAAGCATCATATGAATGCTGCTTGGATGAAATTGAACATGAGGATGCATATGGAAACCATAAGCGTGGATGCTGGGTTGAGTACAAGGTTGGTGAATTTACTGTCACCGATACAGATCCAGTAACAGAAATTAAGTTTTCCATGAAACAGATTGATTGCACACATTCGAAAGGTGGGCTATGCGTGGATTCTGTGTCTATCGTCCCCAGTGATTTGAAAGAAGATAGAAGAAGAGGGGTCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

298

Amino Acids

33.74

Weight (kDa)

6.08

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	22 - 62	2.2e-06	F-box-like
PP2	PF14299	115 - 284	5.8e-40	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53000
fragaria_vesca	FvH4_6g17460
malus_domestica	MD12G1096700.v1.1 MD14G1094500.v1.1
prunus_persica	Prupe.7G121000_v2.0.a1
pyrus_communis	pycom14g09240
rosa_chinensis	RchiOBHm_Chr1g0333681 RchiOBHm_Chr3g0471701 RchiOBHm_Chr6g0303251
rosa_laevigata	RLG00000023407 RLG00000024141 RLG00000029691
rosa_multiflora	Rmu_sc0001306.1_g000035 Rmu_sc0003693.1_g000014 Rmu_sc0004688.1_g000014 Rmu_sc0005631.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409640
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh2BG284700 Rh3AG170300 Rh3BG196000 Rh3CG186700 Rh3CG195000 Rh3DG178900 Rh6AG434100 Rh7BG392500
rosa_wichuraiana	Rw0G009020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	226, 240
AccI	GTMKAC	1 cut(s)	629
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	113, 156, 161, 283
AclWI	GGATC	2 cut(s)	392, 755
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	2 cut(s)	441, 618
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	4 cut(s)	104, 242, 291, 728
AfiI	CCNNNNNNNGG	4 cut(s)	28, 62, 597, 598
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	3 cut(s)	473, 680, 862
AhdI	GACNNNNNGTC	1 cut(s)	569
AjiI	CACGTC	1 cut(s)	569
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	392, 755
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	740
Asp718I	GGTACC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	499, 742, 749
AsuII	TTCGAA	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	226, 240
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	4 cut(s)	296, 364, 473, 632
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	2 cut(s)	162, 664
BlsI	GCNGC	2 cut(s)	163, 665
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	53
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	228, 242
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	2 cut(s)	390, 846
BmsI	GCATC	3 cut(s)	659, 679, 704
BmuI	ACTGGG	2 cut(s)	390, 846
BpiI	GAAGAC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	363, 592
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 62, 597, 598
Bse1I	ACTGG	5 cut(s)	385, 407, 413, 764, 852
Bse8I	GATNNNNATC	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	363, 592
BseGI	GGATG	4 cut(s)	375, 676, 694, 719
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	4 cut(s)	28, 62, 597, 598
BseMII	CTCAG	2 cut(s)	108, 248
BseNI	ACTGG	5 cut(s)	385, 407, 413, 764, 852
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	650
BseYI	CCCAGC	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	2 cut(s)	226, 240
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	2 cut(s)	56, 74
BslFI	GGGAC	2 cut(s)	576, 833
BslI	CCNNNNNNNGG	4 cut(s)	28, 62, 597, 598
BsmFI	GGGAC	2 cut(s)	576, 833
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	812
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	211, 384, 760
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	4 cut(s)	113, 156, 161, 283
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	109, 247
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	228, 242
BspPI	GGATC	2 cut(s)	392, 755
BspT104I	TTCGAA	1 cut(s)	812
BspT107I	GGYRCC	2 cut(s)	226, 240
BsrI	ACTGG	5 cut(s)	385, 407, 413, 764, 852
BssECI	CCNNGG	2 cut(s)	363, 592
BssMI	GATC	3 cut(s)	211, 384, 760
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	363, 592
Bst4CI	ACNGT	1 cut(s)	748
Bst6I	CTCTTC	1 cut(s)	871
BstACI	GRCGYC	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	91, 648
BstDEI	CTNAG	2 cut(s)	117, 234
BstDSI	CCRYGG	1 cut(s)	592
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	4 cut(s)	375, 676, 694, 719
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	214, 387, 763
BstMBI	GATC	3 cut(s)	211, 384, 760
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	2 cut(s)	370, 710
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	592
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	4 cut(s)	375, 676, 694, 719
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	2 cut(s)	91, 648
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	2 cut(s)	82, 153
Csp6I	GTAC	4 cut(s)	103, 241, 290, 727
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	8 cut(s)	50, 100, 209, 349, 593, 613, 683, 787
CviJI	RGCY	7 cut(s)	8, 81, 89, 139, 532, 610, 823
CviKI_1	RGCY	7 cut(s)	8, 81, 89, 139, 532, 610, 823
CviQI	GTAC	4 cut(s)	103, 241, 290, 727
DdeI	CTNAG	2 cut(s)	117, 234
DpnI	GATC	3 cut(s)	213, 386, 762
DpnII	GATC	3 cut(s)	211, 384, 760
DraI	TTTAAA	1 cut(s)	606
DriI	GACNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	871
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	871
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	363, 592
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	441, 618
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	363, 592
EcoT22I	ATGCAT	1 cut(s)	694
ErhI	CCWWGG	2 cut(s)	363, 592
FaeI	CATG	8 cut(s)	53, 103, 212, 352, 596, 616, 686, 790
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	2 cut(s)	576, 833
FatI	CATG	8 cut(s)	49, 99, 208, 348, 592, 612, 682, 786
FauI	CCCGC	1 cut(s)	290
FauNDI	CATATG	2 cut(s)	655, 694
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	2 cut(s)	162, 664
FokI	GGATG	4 cut(s)	382, 683, 701, 726
Fsp4HI	GCNGC	2 cut(s)	162, 664
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	2 cut(s)	162, 664
GsaI	CCCAGC	1 cut(s)	721
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	56, 74
HgaI	GACGC	2 cut(s)	82, 153
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	8 cut(s)	53, 103, 212, 352, 596, 616, 686, 790
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	7 cut(s)	109, 173, 185, 412, 425, 546, 833
HpaII	CCGG	2 cut(s)	56, 74
HphI	GGTGA	3 cut(s)	499, 742, 749
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	3 cut(s)	172, 237, 637
Hpy188III	TCNNGA	2 cut(s)	16, 886
Hpy8I	GTNNAC	1 cut(s)	630
Hpy99I	CGWCG	3 cut(s)	169, 302, 570
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	126, 348, 576, 692, 804
HpyF3I	CTNAG	2 cut(s)	117, 234
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	8 cut(s)	53, 103, 212, 352, 596, 616, 686, 790
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	211, 384, 760
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	659, 679, 704
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	331, 748, 766
MalI	GATC	3 cut(s)	213, 386, 762
MboI	GATC	3 cut(s)	211, 384, 760
MboII	GAAGA	7 cut(s)	88, 401, 434, 555, 878, 885, 888
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	202, 577, 675, 740, 774
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	8 cut(s)	22, 129, 231, 240, 243, 333, 679, 872
Mph1103I	ATGCAT	1 cut(s)	694
MseI	TTAA	2 cut(s)	605, 777
MslI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
MspI	CCGG	2 cut(s)	56, 74
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	665
MvnI	CGCG	1 cut(s)	156
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	2 cut(s)	655, 694
NdeII	GATC	3 cut(s)	211, 384, 760
NlaIII	CATG	8 cut(s)	53, 103, 212, 352, 596, 616, 686, 790
NlaIV	GGNNCC	2 cut(s)	228, 242
NmuCI	GTSAC	2 cut(s)	331, 748
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	6 cut(s)	173, 185, 412, 425, 546, 833
PflFI	GACNNNGTC	2 cut(s)	57, 329
PkrI	GCNGC	2 cut(s)	163, 665
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	228, 242
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	2 cut(s)	57, 329
RsaI	GTAC	4 cut(s)	104, 242, 291, 728
RsaNI	GTAC	4 cut(s)	103, 241, 290, 727
RseI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
SalI	GTCGAC	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	605, 777
SatI	GCNGC	2 cut(s)	162, 664
Sau3AI	GATC	3 cut(s)	211, 384, 760
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	3 cut(s)	659, 679, 704
SfuI	TTCGAA	1 cut(s)	812
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	4 cut(s)	591, 658, 687, 708
Sse9I	AATT	5 cut(s)	202, 577, 675, 740, 774
SsiI	CCGC	4 cut(s)	113, 156, 161, 283
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	363, 592
TaaI	ACNGT	1 cut(s)	748
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	6 cut(s)	17, 219, 297, 387, 629, 812
TasI	AATT	5 cut(s)	202, 577, 675, 740, 774
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	6 cut(s)	173, 185, 412, 425, 546, 833
Tru1I	TTAA	2 cut(s)	605, 777
Tru9I	TTAA	2 cut(s)	605, 777
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	2 cut(s)	331, 748
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	2 cut(s)	331, 748
TspDTI	ATGAA	4 cut(s)	88, 672, 687, 803
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	859
Tth111I	GACNNNGTC	2 cut(s)	57, 329
VpaK11BI	GGWCC	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	629
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.