RLG00000029691

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006335
Physical Location & Seq
Forward (+)
43147662 .. 43148322
661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029691

Sequence Viewer

Length: 414 bp
ATGCACCTGACTCCGCCGGAGATTTGCAACCTGGCCAGGCTCAACCGGGCGTTCCGTGACGCGTCGTCGTCAGATGCGGTTTGGGAATCGAAGCTGCCCCCTAATTACCATGATCTGCTTGATTTGCTGCCTCCCGAGAGGTACCAGAACCTGTCAAAGAAGGACATCTTTGCTCCTGCCTCTGACGTCCAGCTGTCAAGGGACCTCCGGAACGACGACGTATTGTCTTTAGAGGAGGAGCCGGGTCGCTGCTCCAAGGAGGAAGAGTGGAGCCCCGAGACGCTGCGGATTCCCGAGTCGGTTTCGATGTTGATGACTACGTCGTTTTGGTGGGGAGTCTGGGGCTGGTTGTTCTGGTGGTGCAGGATTCTAGCGTCTTCGATTAGGAGGATGTCTTCCTGGTCGACCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

138

Amino Acids

16.09

Weight (kDa)

5.2

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 404
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 3 cut(s) 14, 77, 286
AcoI YGGCCR 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 60
AhdI GACNNNNNGTC 2 cut(s) 64, 223
AjnI CCWGG 3 cut(s) 30, 35, 398
AluBI AGCT 2 cut(s) 94, 193
AluI AGCT 2 cut(s) 94, 193
Alw26I GTCTC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 3 cut(s) 134, 275, 293
Aor13HI TCCGGA 1 cut(s) 207
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 4 cut(s) 94, 127, 249, 283
Asp718I GGTACC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 3 cut(s) 47, 243, 409
AvaI CYCGRG 3 cut(s) 134, 275, 293
AvaII GGWCC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 2 cut(s) 369, 387
BbvI GCAGC 4 cut(s) 81, 114, 236, 270
BciT130I CCWGG 3 cut(s) 32, 37, 400
BcnI CCSGG 3 cut(s) 47, 243, 409
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 371
BisI GCNGC 4 cut(s) 95, 128, 250, 284
BlsI GCNGC 4 cut(s) 96, 129, 251, 285
Bme1390I CCNGG 6 cut(s) 32, 37, 47, 243, 400, 409
Bme18I GGWCC 1 cut(s) 202
BmeRI GACNNNNNGTC 2 cut(s) 64, 223
BmeT110I CYCGRG 3 cut(s) 134, 275, 293
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 4 cut(s) 143, 203, 240, 272
BmrFI CCNGG 6 cut(s) 32, 37, 47, 243, 400, 409
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 369, 387
BpuMI CCSGG 3 cut(s) 47, 243, 409
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
BseAI TCCGGA 1 cut(s) 207
BseBI CCWGG 3 cut(s) 32, 37, 400
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 248, 251
BseXI GCAGC 4 cut(s) 81, 114, 236, 270
BsgI GTGCAG 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 141
BsiHKCI CYCGRG 3 cut(s) 134, 275, 293
BsiSI CCGG 5 cut(s) 17, 46, 208, 242, 409
BslFI GGGAC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 3 cut(s) 134, 275, 293
Bsp1286I GDGCHC 1 cut(s) 275
Bsp13I TCCGGA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 3 cut(s) 14, 77, 286
BspANI GGCC 1 cut(s) 35
BspEI TCCGGA 1 cut(s) 207
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 143, 203, 240, 272
BspT107I GGYRCC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 32, 37, 400
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 186
BstF5I GGATG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 3 cut(s) 32, 37, 400
BstSCI CCNGG 6 cut(s) 30, 35, 45, 241, 398, 407
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 81, 114, 236, 270
BstV2I GAAGAC 2 cut(s) 369, 387
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 396
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 4 cut(s) 51, 68, 289, 363
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 110
CviJI RGCY 7 cut(s) 35, 40, 94, 193, 241, 273, 345
CviKI_1 RGCY 7 cut(s) 35, 40, 94, 193, 241, 273, 345
CviQI GTAC 1 cut(s) 142
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DriI GACNNNNNGTC 2 cut(s) 64, 223
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 258
Eam1105I GACNNNNNGTC 2 cut(s) 64, 223
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 202
Eco88I CYCGRG 3 cut(s) 134, 275, 293
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 30, 35, 398
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 1 cut(s) 113
FaiI YATR 1 cut(s) 111
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 4 cut(s) 95, 128, 250, 284
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 95, 128, 250, 284
FspBI CTAG 1 cut(s) 371
GluI GCNGC 4 cut(s) 95, 128, 250, 284
HaeIII GGCC 1 cut(s) 35
HapII CCGG 5 cut(s) 17, 46, 208, 242, 409
HgaI GACGC 4 cut(s) 51, 68, 289, 363
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 113
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 6 cut(s) 10, 86, 289, 296, 336, 367
HpaII CCGG 5 cut(s) 17, 46, 208, 242, 409
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 73, 184
Hpy188III TCNNGA 3 cut(s) 134, 208, 293
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 5 cut(s) 67, 70, 218, 221, 325
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 3 cut(s) 186, 219, 320
HpyCH4V TGCA 3 cut(s) 4, 27, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpySE526I ACGT 3 cut(s) 186, 219, 320
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 207
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 4 cut(s) 178, 238, 257, 270
Lsp1109I GCAGC 4 cut(s) 81, 114, 236, 270
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 371
MaeII ACGT 3 cut(s) 186, 219, 320
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 275, 369, 387
MhlI GDGCHC 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 103
MluI ACGCGT 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 3 cut(s) 4, 305, 345
MnlI CCTC 8 cut(s) 132, 141, 190, 215, 226, 229, 253, 381
Mox20I TGGCCA 1 cut(s) 35
MroI TCCGGA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 5 cut(s) 17, 46, 208, 242, 409
MspR9I CCNGG 6 cut(s) 32, 37, 47, 243, 400, 409
MvaI CCWGG 3 cut(s) 32, 37, 400
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 3 cut(s) 47, 243, 409
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 4 cut(s) 143, 203, 240, 272
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 86, 289, 367
PflFI GACNNNGTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 96, 129, 251, 285
PleI GAGTC 3 cut(s) 4, 304, 344
PpsI GAGTC 3 cut(s) 4, 304, 344
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 3 cut(s) 30, 35, 398
PspGI CCWGG 3 cut(s) 30, 35, 398
PspN4I GGNNCC 4 cut(s) 143, 203, 240, 272
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 403
SatI GCNGC 4 cut(s) 95, 128, 250, 284
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 3 cut(s) 4, 305, 345
ScrFI CCNGG 6 cut(s) 32, 37, 47, 243, 400, 409
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 14, 77, 286
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 6 cut(s) 30, 35, 45, 241, 398, 407
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 3 cut(s) 189, 222, 323
TaqI TCGA 4 cut(s) 89, 305, 380, 404
TasI AATT 1 cut(s) 103
TfiI GAWTC 3 cut(s) 86, 289, 367
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 4 cut(s) 94, 127, 249, 283
Tsp45I GTSAC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 44
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 404
XspI CTAG 1 cut(s) 371
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.