AT3G53000

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006335
Physical Location & Seq
Forward (+)
19653910 .. 19656135
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53000.1

Sequence Viewer

Length: 903 bp
ATGGGTTCGTCCTTGTCGAATCTAAACGACGGGACGAATGGTTTGGCTATGGGACCTGGTCTCGGCGATATACCGGAAAGTTGTGTCGCTTGTGTGTTTATGTATCTGACTCCACCGGAGATTTGCAATCTGGCTGGATTGAATCGTTCTTTTCGTGGTGCGGCTTCTTCGGATTCTGTTTGGGAAAAGAAGCTTCCGGAGAATTATCAGGATCTGCTTGATTTATTGCCGCCGGAGAGGTATCATAGTCTCTCGAAGAAAGATATCTTCGCTGTGCTTTCTCGTCCAATTCCTTTTGATGATGATAATAAGGAAGTATGGATTGATAGAGTTACAGGACGAGTTTGTATGGCGATTTCTGCTAGAGGAATGTCTATTACTGGAATTGAAGACCGGAGATATTGGAACTGGATTCCAACGGAAGAATCTAGGTTCCATGTTGTAGCCTACTTACAGCAGATTTGGTGGTTTGAAGTTGATGGAACAGTGAGATTCCATCTCCCACCTGGTGTATACTCTCTATCATTCAGAATCCATCTAGGGAGATTCACAAAAAGGCTAGGGAGACGTGTGTGCCACTTTGAACTCACTCATGGTTGGGATCTAAAGCCGGTAAGGTTTTCGCTTTCGACTTCTGATGGTCAAGAAGCATCATGTGAATATTACTTGGACGACGTAGAGAGAAACGAAGCACTTGGAAAACACAAACGCGGTTACTGGATCGAGTATAGGGTTGGAGAATTCATAGTAAATGGATCAGAACCATCGACAGAAATCCAATGGTCGATGAAACAGATTGACTGCACGCACTCGAAAGGAGGGTTATGTGTTGATTCAGTCTTCATAAACCCAATTGGTGATGTGAAAGAACACAAAAGGAAAGCTGTTTTGAAAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

300

Amino Acids

34.2

Weight (kDa)

6.16

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 115 - 284 4.7e-41 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 711
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 3 cut(s) 161, 230, 711
AclWI GGATC 4 cut(s) 219, 609, 728, 763
AcsI RAATTY 1 cut(s) 740
AdeI CACNNNGTG 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 5 cut(s) 142, 389, 473, 584, 892
AjiI CACGTC 1 cut(s) 569
AjnI CCWGG 2 cut(s) 55, 505
AluBI AGCT 3 cut(s) 193, 884, 899
AluI AGCT 3 cut(s) 193, 884, 899
Alw26I GTCTC 3 cut(s) 65, 254, 559
AlwI GGATC 4 cut(s) 219, 609, 728, 763
AlwNI CAGNNNCTG 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 196
ApoI RAATTY 1 cut(s) 740
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 869
AvaII GGWCC 1 cut(s) 53
BbsI GAAGAC 2 cut(s) 396, 832
BccI CCATC 5 cut(s) 473, 504, 543, 632, 772
BciT130I CCWGG 2 cut(s) 57, 507
BcoDI GTCTC 3 cut(s) 65, 254, 559
BfaI CTAG 4 cut(s) 363, 429, 539, 560
BisI GCNGC 2 cut(s) 162, 230
BlsI GCNGC 2 cut(s) 163, 231
Bme1390I CCNGG 2 cut(s) 57, 507
Bme18I GGWCC 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 54, 434
BmrFI CCNGG 2 cut(s) 57, 507
BmsI GCATC 1 cut(s) 659
BpiI GAAGAC 2 cut(s) 396, 832
BsaI GGTCTC 1 cut(s) 65
BsaWI WCCGGW 4 cut(s) 73, 115, 196, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 3 cut(s) 385, 413, 722
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 2 cut(s) 57, 507
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 385, 413, 722
BsgI GTGCAG 1 cut(s) 787
Bsh1236I CGCG 1 cut(s) 711
BsiSI CCGG 6 cut(s) 74, 116, 197, 233, 394, 611
BslFI GGGAC 2 cut(s) 46, 66
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 65, 254, 559
BsmBI CGTCTC 1 cut(s) 559
BsmFI GGGAC 2 cut(s) 46, 66
Bso31I GGTCTC 1 cut(s) 65
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 4 cut(s) 211, 601, 720, 755
BspACI CCGC 3 cut(s) 161, 230, 711
BspEI TCCGGA 1 cut(s) 196
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 2 cut(s) 54, 434
BspPI GGATC 4 cut(s) 219, 609, 728, 763
BspTNI GGTCTC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 3 cut(s) 385, 413, 722
BssAI RCCGGY 1 cut(s) 610
BssMI GATC 4 cut(s) 211, 601, 720, 755
BssNAI GTATAC 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 57, 507
Bst4CI ACNGT 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 806
BstFNI CGCG 1 cut(s) 711
BstKTI GATC 4 cut(s) 214, 604, 723, 758
BstMAI GTCTC 3 cut(s) 65, 254, 559
BstMBI GATC 4 cut(s) 211, 601, 720, 755
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 57, 507
BstSCI CCNGG 2 cut(s) 55, 505
BstUI CGCG 1 cut(s) 711
BstV2I GAAGAC 2 cut(s) 396, 832
BstX2I RGATCY 2 cut(s) 211, 601
BstYI RGATCY 2 cut(s) 211, 601
BstZ17I GTATAC 1 cut(s) 514
BtrI CACGTC 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 806
CaiI CAGNNNCTG 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 53
CsiI ACCWGGT 2 cut(s) 55, 505
CviAII CATG 3 cut(s) 437, 593, 654
CviJI RGCY 9 cut(s) 47, 134, 164, 193, 446, 559, 610, 884, 899
CviKI_1 RGCY 9 cut(s) 47, 134, 164, 193, 446, 559, 610, 884, 899
DpnI GATC 4 cut(s) 213, 603, 722, 757
DpnII GATC 4 cut(s) 211, 601, 720, 755
DraIII CACNNNGTG 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 55, 505
EcoRV GATATC 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 559
FaeI CATG 3 cut(s) 440, 596, 657
FaqI GGGAC 2 cut(s) 46, 66
FatI CATG 3 cut(s) 436, 592, 653
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 162, 230
Fsp4HI GCNGC 2 cut(s) 162, 230
FspBI CTAG 4 cut(s) 363, 429, 539, 560
GluI GCNGC 2 cut(s) 162, 230
HapII CCGG 6 cut(s) 74, 116, 197, 233, 394, 611
Hin1II CATG 3 cut(s) 440, 596, 657
HindIII AAGCTT 2 cut(s) 191, 897
HpaII CCGG 6 cut(s) 74, 116, 197, 233, 394, 611
HphI GGTGA 1 cut(s) 869
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 108, 172, 530, 637, 760
Hpy188III TCNNGA 4 cut(s) 197, 209, 253, 644
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 2 cut(s) 32, 677
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 568, 675
HpyCH4V TGCA 2 cut(s) 126, 804
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 568, 675
Hsp92II CATG 3 cut(s) 440, 596, 657
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 4 cut(s) 211, 601, 720, 755
LweI GCATC 1 cut(s) 659
MabI ACCWGGT 2 cut(s) 55, 505
MaeI CTAG 4 cut(s) 363, 429, 539, 560
MaeII ACGT 2 cut(s) 568, 675
MaeIII GTNAC 2 cut(s) 331, 713
MalI GATC 4 cut(s) 213, 603, 722, 757
MboI GATC 4 cut(s) 211, 601, 720, 755
MboII GAAGA 6 cut(s) 159, 259, 268, 401, 434, 832
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 2 cut(s) 211, 601
MluCI AATT 5 cut(s) 202, 288, 384, 740, 852
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 2 cut(s) 440, 715
MnlI CCTC 3 cut(s) 231, 359, 812
MroI TCCGGA 1 cut(s) 196
MspI CCGG 6 cut(s) 74, 116, 197, 233, 394, 611
MspR9I CCNGG 2 cut(s) 57, 507
MunI CAATTG 1 cut(s) 852
MvaI CCWGG 2 cut(s) 57, 507
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 4 cut(s) 211, 601, 720, 755
NlaIII CATG 3 cut(s) 440, 596, 657
NlaIV GGNNCC 2 cut(s) 54, 434
NmeAIII GCCGAG 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 151
PfeI GAWTC 9 cut(s) 19, 142, 173, 412, 425, 492, 531, 546, 833
PflFI GACNNNGTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 163, 231
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 55, 505
PspGI CCWGG 2 cut(s) 55, 505
PspN4I GGNNCC 2 cut(s) 54, 434
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 211, 601
PsyI GACNNNGTC 1 cut(s) 57
SatI GCNGC 2 cut(s) 162, 230
Sau3AI GATC 4 cut(s) 211, 601, 720, 755
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 57, 507
SexAI ACCWGGT 2 cut(s) 55, 505
SfaNI GCATC 1 cut(s) 659
SinI GGWCC 1 cut(s) 53
Sse9I AATT 5 cut(s) 202, 288, 384, 740, 852
SsiI CCGC 3 cut(s) 161, 230, 711
SspI AATATT 1 cut(s) 662
SspMI CTAG 4 cut(s) 363, 429, 539, 560
StyD4I CCNGG 2 cut(s) 55, 505
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 571, 678
TaqI TCGA 7 cut(s) 17, 254, 629, 723, 767, 785, 812
TasI AATT 5 cut(s) 202, 288, 384, 740, 852
TauI GCSGC 2 cut(s) 164, 232
TfiI GAWTC 9 cut(s) 19, 142, 173, 412, 425, 492, 531, 546, 833
TscAI CASTG 1 cut(s) 492
TspDTI ATGAA 3 cut(s) 733, 803, 832
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 4 cut(s) 363, 429, 539, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.