pycom14g09240

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0006335
Physical Location & Seq
Forward (+)
10893902 .. 10897343
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g09240.1

Sequence Viewer

Length: 903 bp
ATGGGGGCTTCGCTCTCGAACCTGACGGAGGGGACGAATGGGGCGGGTCATGGACCGGGTCTTGGCGACATACCCGAGAGCTGTGTGGCCTGCGCGTTCATGTACCTGACTCCTCCTGAGATTTGCAATCTTGCGAGGCTCAACAGGGCGTTTCGCGGTGCTGCGTCGTCTGATCCAGTTTGGGAATCCAAGTTGCCCCCAAATTGCCGCAGGGGGGATGATCTACTCGATTTGGTGCCTCCTGAGAGGTACCAAAACCGCTCGAAAAAGGACATCTTTGCTATGCTCTCCCGCCCTGTACCCTTCGACGATGGCAATAAGGTGGTATGGATAGACACGGTCACAGGAAGGGTTTGTATGTCGGTTTCTGCCAGAGGGATGGCGATAACTGGGATTGAAGATAGGCGATACTGGAACTGGGTTCCTACTGAAGAATCTAGGTTTCAGGTTGTGGCTTATTTACAGCAAATATGGTGGTTTGAAGTAGATGGGGTGGTGAAGTTTCCTTTTCCTGCTGGTATCTACACTTTATCTTTCAGGCTTCACATTGGAAGATTCTCAAAAAGATTGGGACGACGTGTCTGCAACTTTGAGCACACCCACGGTTGGGATATAAAGCCCGTGCGATTTGAGTTGTCAACTTCAGATGGACAGCAAGCATCATATGAATGCTGCTTGGATGAAATCGAACATGGGGATGCATATGGAAACCATAAGCGCGGATGCTGGGCTGAGTACAAAGTTGGTGAATTTACTGTCACTGATACCGATCCTGTAACAGAAGTCAAATTTTCCATGAAACAGATTGATTGCACACATTCAAAAGGTGGGCTATGCGTGGATTCTGTGTCTATCGTCCCCAGTGATTTGAAAGAGCGTAAAAGAAGAGGGGTCTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

301

Amino Acids

33.84

Weight (kDa)

7.02

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 287 4.9e-40 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 2 cut(s) 235, 249
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 3 cut(s) 95, 156, 720
AciI CCGC 6 cut(s) 44, 156, 208, 259, 292, 720
AclWI GGATC 2 cut(s) 167, 764
AcsI RAATTY 2 cut(s) 749, 788
AcuI CTGAAG 2 cut(s) 450, 627
AfaI GTAC 4 cut(s) 104, 251, 300, 737
AfiI CCNNNNNNNGG 5 cut(s) 28, 62, 214, 606, 607
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 398, 482, 822, 871
AhdI GACNNNNNGTC 1 cut(s) 578
AjiI CACGTC 1 cut(s) 578
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
Alw21I GWGCWC 1 cut(s) 597
AlwI GGATC 2 cut(s) 167, 764
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 161, 672
ApoI RAATTY 2 cut(s) 749, 788
Asp718I GGTACC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 95, 720
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 508, 758
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 53
BanI GGYRCC 2 cut(s) 235, 249
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 148, 659
BccI CCATC 4 cut(s) 305, 373, 482, 641
BcgI CGANNNNNNTGC 2 cut(s) 564, 598
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 438
BisI GCNGC 3 cut(s) 162, 208, 673
BlsI GCNGC 3 cut(s) 163, 209, 674
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 237, 251, 423
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 3 cut(s) 399, 427, 855
BmsI GCATC 3 cut(s) 668, 688, 713
BmuI ACTGGG 3 cut(s) 399, 427, 855
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 768
BsaJI CCNNGG 1 cut(s) 601
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 62, 214, 606, 607
Bse1I ACTGG 5 cut(s) 176, 394, 416, 422, 861
Bse8I GATNNNNATC 1 cut(s) 768
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 5 cut(s) 223, 384, 685, 703, 728
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 5 cut(s) 28, 62, 214, 606, 607
BseMII CTCAG 3 cut(s) 108, 234, 723
BseNI ACTGG 5 cut(s) 176, 394, 416, 422, 861
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 148, 659
BseYI CCCAGC 1 cut(s) 726
Bsh1236I CGCG 3 cut(s) 95, 156, 720
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 2 cut(s) 235, 249
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 3 cut(s) 46, 585, 842
BslI CCNNNNNNNGG 5 cut(s) 28, 62, 214, 606, 607
BsmFI GGGAC 3 cut(s) 46, 585, 842
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 3 cut(s) 172, 220, 769
BspACI CCGC 6 cut(s) 44, 156, 208, 259, 292, 720
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 109, 235, 724
BspFNI CGCG 3 cut(s) 95, 156, 720
BspLI GGNNCC 3 cut(s) 237, 251, 423
BspPI GGATC 2 cut(s) 167, 764
BspT107I GGYRCC 2 cut(s) 235, 249
BsrBI CCGCTC 1 cut(s) 261
BsrI ACTGG 5 cut(s) 176, 394, 416, 422, 861
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 3 cut(s) 172, 220, 769
Bst4CI ACNGT 3 cut(s) 340, 605, 757
Bst6I CTCTTC 1 cut(s) 880
BstC8I GCNNGC 2 cut(s) 91, 657
BstDEI CTNAG 3 cut(s) 117, 243, 732
BstDSI CCRYGG 1 cut(s) 601
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 5 cut(s) 223, 384, 685, 703, 728
BstFNI CGCG 3 cut(s) 95, 156, 720
BstHHI GCGC 2 cut(s) 95, 720
BstKTI GATC 3 cut(s) 175, 223, 772
BstMBI GATC 3 cut(s) 172, 220, 769
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 3 cut(s) 95, 156, 720
BstV1I GCAGC 2 cut(s) 148, 659
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 601
BtrI CACGTC 1 cut(s) 578
BtsCI GGATG 5 cut(s) 223, 384, 685, 703, 728
BtsIMutI CAGTG 2 cut(s) 759, 868
Cac8I GCNNGC 2 cut(s) 91, 657
CfoI GCGC 2 cut(s) 95, 720
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 153
Csp6I GTAC 4 cut(s) 103, 250, 299, 736
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 4 cut(s) 50, 100, 692, 796
CviJI RGCY 9 cut(s) 8, 81, 89, 139, 455, 541, 619, 731, 832
CviKI_1 RGCY 9 cut(s) 8, 81, 89, 139, 455, 541, 619, 731, 832
CviQI GTAC 4 cut(s) 103, 250, 299, 736
DdeI CTNAG 3 cut(s) 117, 243, 732
DpnI GATC 3 cut(s) 174, 222, 771
DpnII GATC 3 cut(s) 172, 220, 769
DriI GACNNNNNGTC 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 880
Eam1105I GACNNNNNGTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 450, 627
Eco88I CYCGRG 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 703
FaeI CATG 4 cut(s) 53, 103, 695, 799
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 3 cut(s) 46, 585, 842
FatI CATG 4 cut(s) 49, 99, 691, 795
FauI CCCGC 2 cut(s) 37, 299
FauNDI CATATG 2 cut(s) 664, 703
Fnu4HI GCNGC 3 cut(s) 162, 208, 673
FokI GGATG 5 cut(s) 230, 391, 692, 710, 735
Fsp4HI GCNGC 3 cut(s) 162, 208, 673
FspBI CTAG 1 cut(s) 438
GlaI GCGC 2 cut(s) 94, 719
GluI GCNGC 3 cut(s) 162, 208, 673
GsaI CCCAGC 1 cut(s) 730
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 153
HhaI GCGC 2 cut(s) 95, 720
Hin1II CATG 4 cut(s) 53, 103, 695, 799
Hin6I GCGC 2 cut(s) 93, 718
HinP1I GCGC 2 cut(s) 93, 718
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HinfI GANTC 5 cut(s) 109, 185, 434, 555, 842
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 508, 758
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 2 cut(s) 172, 646
Hpy188III TCNNGA 4 cut(s) 16, 116, 242, 895
Hpy8I GTNNAC 1 cut(s) 639
Hpy99I CGWCG 3 cut(s) 169, 311, 579
HpyAV CCTTC 2 cut(s) 313, 342
HpyCH4III ACNGT 3 cut(s) 340, 605, 757
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 4 cut(s) 126, 585, 701, 813
HpyF3I CTNAG 3 cut(s) 117, 243, 732
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 4 cut(s) 53, 103, 695, 799
HspAI GCGC 2 cut(s) 93, 718
KpnI GGTACC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 172, 220, 769
Lsp1109I GCAGC 2 cut(s) 148, 659
LweI GCATC 3 cut(s) 668, 688, 713
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 3 cut(s) 340, 757, 775
MalI GATC 3 cut(s) 174, 222, 771
MbiI CCGCTC 1 cut(s) 261
MboI GATC 3 cut(s) 172, 220, 769
MboII GAAGA 4 cut(s) 410, 443, 564, 897
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 3 cut(s) 202, 749, 788
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 7 cut(s) 22, 123, 129, 240, 249, 368, 881
Mph1103I ATGCAT 1 cut(s) 703
MslI CAYNNNNRTG 2 cut(s) 667, 696
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 674
MvnI CGCG 3 cut(s) 95, 156, 720
NciI CCSGG 1 cut(s) 57
NdeI CATATG 2 cut(s) 664, 703
NdeII GATC 3 cut(s) 172, 220, 769
NlaIII CATG 4 cut(s) 53, 103, 695, 799
NlaIV GGNNCC 3 cut(s) 237, 251, 423
NmuCI GTSAC 2 cut(s) 340, 757
NsiI ATGCAT 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 4 cut(s) 185, 434, 555, 842
PflFI GACNNNGTC 2 cut(s) 57, 338
PkrI GCNGC 3 cut(s) 163, 209, 674
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 237, 251, 423
PspPI GGNCC 1 cut(s) 53
PsyI GACNNNGTC 2 cut(s) 57, 338
RsaI GTAC 4 cut(s) 104, 251, 300, 737
RsaNI GTAC 4 cut(s) 103, 250, 299, 736
RseI CAYNNNNRTG 2 cut(s) 667, 696
SatI GCNGC 3 cut(s) 162, 208, 673
Sau3AI GATC 3 cut(s) 172, 220, 769
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 597
SetI ASST 9 cut(s) 24, 83, 108, 251, 324, 443, 450, 580, 829
SfaNI GCATC 3 cut(s) 668, 688, 713
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 667, 696
Sse9I AATT 3 cut(s) 202, 749, 788
SsiI CCGC 6 cut(s) 44, 156, 208, 259, 292, 720
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 340, 605, 757
TaiI ACGT 1 cut(s) 580
TaqI TCGA 5 cut(s) 17, 228, 263, 306, 687
TasI AATT 3 cut(s) 202, 749, 788
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 4 cut(s) 185, 434, 555, 842
TscAI CASTG 2 cut(s) 766, 868
TseFI GTSAC 2 cut(s) 340, 757
TseI GCWGC 2 cut(s) 161, 672
Tsp45I GTSAC 2 cut(s) 340, 757
TspDTI ATGAA 4 cut(s) 88, 681, 696, 812
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 2 cut(s) 766, 868
Tth111I GACNNNGTC 2 cut(s) 57, 338
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 2 cut(s) 749, 788
XspI CTAG 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.