Rmu_sc0026537.1_g000004
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026537.1
OG0013052
Physical Location & Seq
Reverse (-)
14963 .. 16559
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026537.1_g000004.1.cds

Sequence Viewer

Length: 1551 bp
atggaacccaatggtctagggggtggtttgtttccagagatgaggtctggaatgttaggcctagaaatgcctctgcaccaaacacaaaaccccccaaatcctcagaacccacaccaccatatgcaccaaccccaaatggtcagctatgcccaccatgaagctgatcacaatcatcacccacaagctcaccaatccgcaaaacatgggtacccatacgccacaaagcccaagcagatcaccctcagtgatgaagatgaacctgggtttggtgctgatgacagcgctggtgaaaacaagaggaaaatctcaccatggcagagaatgaagtggactgacaccatggtcaggcttctaatcatggctgtgttttacattggggatgagggtggctctgagggccctgatcccacagggaagaagaagagtggtggaggattgctgcagaagaaagggaaatggaaatcggtgtcgcgggctatgatggagaagggtttctatgtctctcctcagcaatgtgaggacaagttcaatgatttgaacaagaggtacaagagggtgaatgacatacttggcaagggaactgcttgcaaggtcgtggagaatcaagggttattggagaagatggaattgtcgtccaagatgaaggacgaagttaaaaaactgctgaattccaagcacttgttctttagggaaatgtgcgcttatcacaacagttgcggccatggcactgttggtgctgctggagctagcggtgtgcataactcatccccggaagacccttcggaggttcaattgcagcagcagcagcagcagccccagcagcaaagcggtgtgcataactcatccccggaagacccttcggaggttcaattgcagcagcagcagcagcagacgccccagcagcaaaggtgctttcatgtatcggaaaatgctcatgtcgttgccaattcgggcaggtcagagacggagggatccaaaatgtttaaagcagagagtggtggcgaggatgaagatgaagacgatgaggatgatgattcggaggacgacgatgatgaggaggaagaaggggttgttgaaggcgtttcgaggggtcaaattgggcatggacatgaggatgaggatgagaatgatcatgaaagagctaaaaggccaagaaagggaagctgtttttctgggtcctcacataaaatgttgatgcagcaattgagcagtgaagtaagtggtgtgatccaagatgtgtccaagagtccatgggagaagaagcagtggatgaaagcaaggctgatacaattggaggagcaacaagtgaactaccaataccaatctttcgagctcgaaaagcagaggctcaagtgggttaagtatagtagcaaaaaggaaagggatatggaaagagctaagcttgcgaatgagagaagaaggcttgagaacgagagaatgctattgcttgttaggcagaaggagctcgaattgcttgatctgcatcaccaccagcagcaacaacatcagcaacaaaattcttcaaacaagagaagcgacctcaccggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

516

Amino Acids

58.71

Weight (kDa)

5.89

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 945
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 1 cut(s) 472
AciI CCGC 5 cut(s) 195, 472, 717, 750, 828
AclWI GGATC 4 cut(s) 398, 966, 979, 1222
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 2 cut(s) 667, 1516
AcyI GRCGYC 1 cut(s) 893
AfaI GTAC 2 cut(s) 209, 548
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 5 cut(s) 266, 345, 784, 862, 1157
AgsI TTSAA 6 cut(s) 529, 538, 791, 869, 1076, 1524
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 4 cut(s) 249, 281, 665, 697
Alw21I GWGCWC 2 cut(s) 1335, 1467
Alw26I GTCTC 2 cut(s) 505, 956
AlwI GGATC 4 cut(s) 398, 966, 979, 1222
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 4 cut(s) 58, 397, 718, 1148
ApaI GGGCCC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 667, 1516
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 284, 701
AspS9I GGNCC 3 cut(s) 397, 398, 1176
AsuC2I CCSGG 2 cut(s) 770, 848
AsuHPI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1478, 1534
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 1176
BaeGI GKGCMC 1 cut(s) 401
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BamHI GGATCC 1 cut(s) 971
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 3 cut(s) 401, 1335, 1467
BbsI GAAGAC 3 cut(s) 780, 858, 1023
Bbv12I GWGCWC 2 cut(s) 1335, 1467
BbvCI CCTCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 475, 616
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 2 cut(s) 163, 1129
BcnI CCSGG 2 cut(s) 770, 848
BcoDI GTCTC 2 cut(s) 505, 956
BfaI CTAG 3 cut(s) 17, 62, 747
BfmI CTRYAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 945
BlpI GCTNAGC 1 cut(s) 1398
Bme1390I CCNGG 3 cut(s) 261, 770, 848
Bme18I GGWCC 1 cut(s) 1176
BmgT120I GGNCC 3 cut(s) 397, 398, 1176
BmiI GGNNCC 5 cut(s) 6, 209, 399, 973, 1177
BmrFI CCNGG 3 cut(s) 261, 770, 848
BmsI GCATC 2 cut(s) 1185, 1492
BmtI GCTAGC 1 cut(s) 750
BpiI GAAGAC 3 cut(s) 780, 858, 1023
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1398
BpuEI CTTGAG 2 cut(s) 1334, 1445
BpuMI CCSGG 2 cut(s) 770, 848
BsaBI GATNNNNATC 2 cut(s) 168, 1482
BsaHI GRCGYC 1 cut(s) 893
BsaJI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 846, 1250
BsaWI WCCGGW 1 cut(s) 1544
Bsc4I CCNNNNNNNGG 5 cut(s) 266, 345, 784, 862, 1157
Bse3DI GCAATG 1 cut(s) 518
Bse8I GATNNNNATC 2 cut(s) 168, 1482
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 846, 1250
BseGI GGATG 8 cut(s) 385, 764, 842, 1012, 1033, 1120, 1126, 1275
BseJI GATNNNNATC 2 cut(s) 168, 1482
BseLI CCNNNNNNNGG 5 cut(s) 266, 345, 784, 862, 1157
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 4 cut(s) 116, 256, 384, 521
BseRI GAGGAG 3 cut(s) 495, 1070, 1310
BseSI GKGCMC 1 cut(s) 401
BseYI CCCAGC 2 cut(s) 816, 897
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 4 cut(s) 60, 399, 720, 1150
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 1335, 1467
BsiSI CCGG 3 cut(s) 770, 848, 1545
BslI CCNNNNNNNGG 5 cut(s) 266, 345, 784, 862, 1157
BsmAI GTCTC 2 cut(s) 505, 956
BsmBI CGTCTC 1 cut(s) 956
BsmI GAATGC 1 cut(s) 1443
BsnI GGCC 4 cut(s) 60, 399, 720, 1150
Bsp120I GGGCCC 1 cut(s) 397
Bsp1286I GDGCHC 3 cut(s) 401, 1335, 1467
Bsp143I GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
Bsp1720I GCTNAGC 1 cut(s) 1398
Bsp19I CCATGG 4 cut(s) 311, 339, 721, 1250
BspACI CCGC 5 cut(s) 195, 472, 717, 750, 828
BspANI GGCC 4 cut(s) 60, 399, 720, 1150
BspCNI CTCAG 4 cut(s) 115, 255, 385, 520
BspFNI CGCG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 1132
BspLI GGNNCC 5 cut(s) 6, 209, 399, 973, 1177
BspMAI CTGCAG 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 945
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 4 cut(s) 398, 966, 979, 1222
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 518
BssECI CCNNGG 7 cut(s) 260, 311, 339, 721, 768, 846, 1250
BssMI GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
BssNI GRCGYC 1 cut(s) 893
BssT1I CCWWGG 4 cut(s) 311, 339, 721, 1250
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 713, 730
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 893
BstC8I GCNNGC 4 cut(s) 474, 586, 748, 1404
BstDEI CTNAG 5 cut(s) 102, 242, 393, 507, 1398
BstDSI CCRYGG 4 cut(s) 311, 339, 721, 1250
BstF5I GGATG 8 cut(s) 385, 764, 842, 1012, 1033, 1120, 1126, 1275
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 2 cut(s) 284, 701
BstKTI GATC 7 cut(s) 166, 237, 406, 974, 1132, 1230, 1480
BstMAI GTCTC 2 cut(s) 505, 956
BstMBI GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 3 cut(s) 259, 768, 846
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 401
BstUI CGCG 1 cut(s) 472
BstV2I GAAGAC 3 cut(s) 780, 858, 1023
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
BsuRI GGCC 4 cut(s) 60, 399, 720, 1150
BtgI CCRYGG 4 cut(s) 311, 339, 721, 1250
BtsCI GGATG 8 cut(s) 385, 764, 842, 1012, 1033, 1120, 1126, 1275
BtsI GCAGTG 2 cut(s) 1216, 1271
BtsIMutI CAGTG 4 cut(s) 250, 726, 1216, 1271
BveI ACCTGC 1 cut(s) 945
Cac8I GCNNGC 4 cut(s) 474, 586, 748, 1404
CciI TCATGA 1 cut(s) 1132
CfoI GCGC 2 cut(s) 284, 701
Cfr13I GGNCC 3 cut(s) 397, 398, 1176
CseI GACGC 1 cut(s) 901
Csp6I GTAC 2 cut(s) 208, 547
CviQI GTAC 2 cut(s) 208, 547
DdeI CTNAG 5 cut(s) 102, 242, 393, 507, 1398
DpnI GATC 7 cut(s) 165, 236, 405, 973, 1131, 1229, 1479
DpnII GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
DraI TTTAAA 1 cut(s) 985
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 2 cut(s) 1333, 1465
Eco130I CCWWGG 4 cut(s) 311, 339, 721, 1250
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 3 cut(s) 401, 1335, 1467
Eco47I GGWCC 1 cut(s) 1176
Eco47III AGCGCT 1 cut(s) 283
Eco53kI GAGCTC 2 cut(s) 1333, 1465
EcoICRI GAGCTC 2 cut(s) 1333, 1465
EcoO109I RGGNCCY 3 cut(s) 397, 398, 1176
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 4 cut(s) 311, 339, 721, 1250
EcoT38I GRGCYC 3 cut(s) 401, 1335, 1467
ErhI CCWWGG 4 cut(s) 311, 339, 721, 1250
Esp3I CGTCTC 1 cut(s) 956
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 2 cut(s) 163, 1129
FokI GGATG 8 cut(s) 392, 751, 829, 1019, 1040, 1127, 1133, 1282
FriOI GRGCYC 3 cut(s) 401, 1335, 1467
FspBI CTAG 3 cut(s) 17, 62, 747
GlaI GCGC 2 cut(s) 283, 700
GsaI CCCAGC 2 cut(s) 820, 901
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 60, 399, 720, 1150
HapII CCGG 3 cut(s) 770, 848, 1545
HgaI GACGC 1 cut(s) 901
HhaI GCGC 2 cut(s) 284, 701
Hin1I GRCGYC 1 cut(s) 893
Hin6I GCGC 2 cut(s) 282, 699
HinP1I GCGC 2 cut(s) 282, 699
HindIII AAGCTT 1 cut(s) 1400
HinfI GANTC 3 cut(s) 601, 1034, 1246
HpaII CCGG 3 cut(s) 770, 848, 1545
HphI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1478, 1534
Hpy166II GTNNAC 2 cut(s) 330, 1309
Hpy188I TCNGA 7 cut(s) 105, 394, 784, 862, 925, 961, 1039
Hpy188III TCNNGA 3 cut(s) 35, 48, 1133
Hpy8I GTNNAC 2 cut(s) 330, 1309
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 8 cut(s) 481, 637, 789, 867, 1058, 1070, 1413, 1453
HpyCH4III ACNGT 2 cut(s) 713, 730
HpyF3I CTNAG 5 cut(s) 102, 242, 393, 507, 1398
Hsp92I GRCGYC 1 cut(s) 893
HspAI GCGC 2 cut(s) 282, 699
KpnI GGTACC 1 cut(s) 211
Ksp22I TGATCA 2 cut(s) 163, 1129
Kzo9I GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
LmnI GCTCC 3 cut(s) 743, 1297, 1462
LweI GCATC 2 cut(s) 1185, 1492
MaeI CTAG 3 cut(s) 17, 62, 747
MalI GATC 7 cut(s) 165, 236, 405, 973, 1131, 1229, 1479
MboI GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
MfeI CAATTG 4 cut(s) 791, 869, 1202, 1289
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 3 cut(s) 401, 1335, 1467
MlyI GAGTC 1 cut(s) 1255
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 3 cut(s) 654, 984, 1359
MslI CAYNNNNRTG 3 cut(s) 362, 1107, 1113
MspI CCGG 3 cut(s) 770, 848, 1545
MspR9I CCNGG 3 cut(s) 261, 770, 848
MunI CAATTG 4 cut(s) 791, 869, 1202, 1289
Mva1269I GAATGC 1 cut(s) 1443
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 472
NciI CCSGG 2 cut(s) 770, 848
NcoI CCATGG 4 cut(s) 311, 339, 721, 1250
NdeI CATATG 1 cut(s) 120
NdeII GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
NheI GCTAGC 1 cut(s) 746
NlaIV GGNNCC 5 cut(s) 6, 209, 399, 973, 1177
PagI TCATGA 1 cut(s) 1132
PceI AGGCCT 1 cut(s) 60
PctI GAATGC 1 cut(s) 1443
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 601, 1034
PleI GAGTC 1 cut(s) 1254
PpsI GAGTC 1 cut(s) 1254
PpuMI RGGWCCY 1 cut(s) 1176
Psp124BI GAGCTC 2 cut(s) 1335, 1467
Psp5II RGGWCCY 1 cut(s) 1176
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 2 cut(s) 816, 897
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 5 cut(s) 6, 209, 399, 973, 1177
PspOMI GGGCCC 1 cut(s) 397
PspPI GGNCC 3 cut(s) 397, 398, 1176
PspPPI RGGWCCY 1 cut(s) 1176
PsrI GAACNNNNNNTAC 4 cut(s) 530, 562, 1301, 1333
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 971
RsaI GTAC 2 cut(s) 209, 548
RsaNI GTAC 2 cut(s) 208, 547
RseI CAYNNNNRTG 3 cut(s) 362, 1107, 1113
SacI GAGCTC 2 cut(s) 1335, 1467
SaqAI TTAA 3 cut(s) 654, 984, 1359
Sau3AI GATC 7 cut(s) 163, 234, 403, 971, 1129, 1227, 1477
Sau96I GGNCC 3 cut(s) 397, 398, 1176
SchI GAGTC 1 cut(s) 1255
ScrFI CCNGG 3 cut(s) 261, 770, 848
SduI GDGCHC 3 cut(s) 401, 1335, 1467
SfaNI GCATC 2 cut(s) 1185, 1492
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 1176
SmiMI CAYNNNNRTG 3 cut(s) 362, 1107, 1113
SmlI CTYRAG 2 cut(s) 1349, 1424
SmoI CTYRAG 2 cut(s) 1349, 1424
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 5 cut(s) 195, 472, 717, 750, 828
SspMI CTAG 3 cut(s) 17, 62, 747
SstI GAGCTC 2 cut(s) 1335, 1467
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 259, 768, 846
StyI CCWWGG 4 cut(s) 311, 339, 721, 1250
TaaI ACNGT 2 cut(s) 713, 730
TaqI TCGA 4 cut(s) 1085, 1329, 1335, 1467
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 2 cut(s) 601, 1034
Tru1I TTAA 3 cut(s) 654, 984, 1359
Tru9I TTAA 3 cut(s) 654, 984, 1359
TscAI CASTG 4 cut(s) 250, 733, 1216, 1271
TspGWI ACGGA 1 cut(s) 980
TspRI CASTG 4 cut(s) 250, 733, 1216, 1271
VpaK11BI GGWCC 1 cut(s) 1176
XapI RAATTY 2 cut(s) 667, 1516
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 3 cut(s) 17, 62, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.