Rh3AG170500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013052
Physical Location & Seq
Forward (+)
15792371 .. 15794758
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG170500.1

Sequence Viewer

Length: 1470 bp
ATGGAACCCAATGGTCTAGGGGGTGGTTTGTTTCCAGAGATGAGGTCTGGAATGTTAGGCCTAGAAATGCCTCTGCACCAAACACAAAACCCCCCAAATCCTCAGAACCCACACCACCATATGCACCAACCCCAAATGGTCAGCTATGCCCACCATGAAGCTGATCACAATCATCACCCACAAGCTCACCAATCTGCAAAACATGGGTACCCATATGCCACAAAGCCCAAACAGATCACCCTCAGTGATGAAGATGAACCTGGGTTTGGTGCTGACGACAGCGCTGGTGAAAACAAGAGGAAAATCTCACCATGGCAGAGAATGAAGTGGACTGACACCATGGTCAGGCTTCTAATCATGGCTGTGTTTTACATTGGGGATGAGGGTGGCTCTGAAGGCCCTGATCCCACAGGGAAGAAGAAGAGTGGTGGAGGATTGCTGCAGAAGAAAGGGAAATGGAAATCGGTGTCGCGGGCTATGATGGAGAAGGGTTTCTATGTCTCTCCTCAGCAATGTGAGGACAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTGAATGACATACTTGGCAAGGGAACTGCTTGCAAGGTCGTGGAGAATCAAGGGTTATTGGAGAAGATGGAATTGTCGTCCAAGATGAAGGACGAGGTTAAAAAATTGCTGAATTCCAAGCACTTGTTCTTTAGGGAAATGTGTGCTTATCACAACAGTTGCGGCCATGGCACTGTTGGTGCTGCTGGAGCTAGCGGTGTGCATAACTCATCCCCGGAAGACCCTTCGGAGGTTCAATTGCAGCAGCAGCAGCAGCAGCCCCAGCAGCAAAGGTGCTTTCATGTATCGGAAAATGCTCATGTCGTTGCCAATTCGGGCAGGTCAGAGACGGAGGGATCCAAAATGTTTAAAGCAGAGAGTGGTGGCGAGGAGGAAGATGAAGACTATGAGGATGATGATTCGGAGGATGACGATGAGGAGGAGGAAGAAGGGGTTGTTGAAGGCGTTTCGAGGGGTCAAATTGGGCATGGACATGAGGATGAGGATGAGAATGATCATGAAAGAGCTAAAAGGCCAAGAAAGGGAAGCTGTTTTTCTGGGTCCTCACATAAAATGTTGATGCAGCAATTGAGCAGTGAAGTAAGTGGTGTGATCCAAGATGTGTCCAAGAGTCCATGGGAGAAGAAGCAGTGGATGAAAGCAAGGCTGATACAATTGGAGCAGCAACAAGTGAACTACCAATACCAATCTTTCGAGCTCGAAAAGCAGAGGCTCAAGTGGGTTAAGTATAGTAGCAAAAAGGAAAGGGATATGGAAAGAGCTAAGCTTGGGAATGAGAGAAGAAGGCTTGAGAACGAGAGAATGCTATTGCTTGTTAGGCAGAAGGAGCTCGAATTGCTTGATCTGCATCACCAGCAGCAGCAACAACATCAGCAACAAAATTCTTCAAACAAGAGAAGCGACCTCACCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

489

Amino Acids

55.75

Weight (kDa)

6.1

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 107 - 200 1.3e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 864
Acc65I GGTACC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 207
AccII CGCG 1 cut(s) 472
AciI CCGC 3 cut(s) 472, 717, 750
AclWI GGATC 4 cut(s) 398, 885, 898, 1141
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 2 cut(s) 667, 1435
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 209, 548
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1076
AgsI TTSAA 5 cut(s) 529, 538, 791, 995, 1443
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 4 cut(s) 249, 281, 665, 697
Alw21I GWGCWC 2 cut(s) 1254, 1386
Alw26I GTCTC 2 cut(s) 505, 875
AlwI GGATC 4 cut(s) 398, 885, 898, 1141
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 4 cut(s) 58, 397, 718, 1067
ApoI RAATTY 2 cut(s) 667, 1435
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 398, 1095
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1397, 1453
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 1095
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BamHI GGATCC 1 cut(s) 890
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 1254, 1386
BbsI GAAGAC 2 cut(s) 780, 942
Bbv12I GWGCWC 2 cut(s) 1254, 1386
BbvCI CCTCAGC 1 cut(s) 507
BccI CCATC 2 cut(s) 475, 616
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 2 cut(s) 163, 1048
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 2 cut(s) 505, 875
BfaI CTAG 3 cut(s) 17, 62, 747
BfmI CTRYAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 864
BlpI GCTNAGC 1 cut(s) 1317
Bme1390I CCNGG 2 cut(s) 261, 770
Bme18I GGWCC 1 cut(s) 1095
BmgT120I GGNCC 2 cut(s) 398, 1095
BmiI GGNNCC 4 cut(s) 6, 209, 892, 1096
BmrFI CCNGG 2 cut(s) 261, 770
BmsI GCATC 2 cut(s) 1104, 1411
BmtI GCTAGC 1 cut(s) 750
BpiI GAAGAC 2 cut(s) 780, 942
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1317
BpuEI CTTGAG 2 cut(s) 1253, 1364
BpuMI CCSGG 1 cut(s) 770
BsaBI GATNNNNATC 2 cut(s) 168, 1401
BsaJI CCNNGG 6 cut(s) 260, 311, 339, 721, 768, 1169
BsaWI WCCGGW 1 cut(s) 1463
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1076
Bse3DI GCAATG 1 cut(s) 518
Bse8I GATNNNNATC 2 cut(s) 168, 1401
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 6 cut(s) 260, 311, 339, 721, 768, 1169
BseGI GGATG 7 cut(s) 385, 764, 952, 967, 1039, 1045, 1194
BseJI GATNNNNATC 2 cut(s) 168, 1401
BseLI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1076
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 3 cut(s) 116, 256, 521
BseRI GAGGAG 4 cut(s) 495, 938, 986, 989
BseYI CCCAGC 1 cut(s) 816
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 4 cut(s) 60, 399, 720, 1069
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 1254, 1386
BsiSI CCGG 2 cut(s) 770, 1464
BslI CCNNNNNNNGG 4 cut(s) 266, 345, 784, 1076
BsmAI GTCTC 2 cut(s) 505, 875
BsmBI CGTCTC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 1362
BsnI GGCC 4 cut(s) 60, 399, 720, 1069
Bsp1286I GDGCHC 2 cut(s) 1254, 1386
Bsp143I GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
Bsp1720I GCTNAGC 1 cut(s) 1317
Bsp19I CCATGG 4 cut(s) 311, 339, 721, 1169
BspACI CCGC 3 cut(s) 472, 717, 750
BspANI GGCC 4 cut(s) 60, 399, 720, 1069
BspCNI CTCAG 3 cut(s) 115, 255, 520
BspFNI CGCG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 4 cut(s) 6, 209, 892, 1096
BspMAI CTGCAG 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 864
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 4 cut(s) 398, 885, 898, 1141
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 518
BssECI CCNNGG 6 cut(s) 260, 311, 339, 721, 768, 1169
BssMI GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
BssT1I CCWWGG 4 cut(s) 311, 339, 721, 1169
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 713, 730
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 474, 586, 748
BstDEI CTNAG 4 cut(s) 102, 242, 507, 1317
BstDSI CCRYGG 4 cut(s) 311, 339, 721, 1169
BstF5I GGATG 7 cut(s) 385, 764, 952, 967, 1039, 1045, 1194
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 7 cut(s) 166, 237, 406, 893, 1051, 1149, 1399
BstMAI GTCTC 2 cut(s) 505, 875
BstMBI GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 259, 768
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 1 cut(s) 472
BstV2I GAAGAC 2 cut(s) 780, 942
BstX2I RGATCY 1 cut(s) 890
BstYI RGATCY 1 cut(s) 890
BsuRI GGCC 4 cut(s) 60, 399, 720, 1069
BtgI CCRYGG 4 cut(s) 311, 339, 721, 1169
BtsCI GGATG 7 cut(s) 385, 764, 952, 967, 1039, 1045, 1194
BtsI GCAGTG 2 cut(s) 1135, 1190
BtsIMutI CAGTG 4 cut(s) 250, 726, 1135, 1190
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 3 cut(s) 474, 586, 748
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 398, 1095
Csp6I GTAC 2 cut(s) 208, 547
CviQI GTAC 2 cut(s) 208, 547
DdeI CTNAG 4 cut(s) 102, 242, 507, 1317
DpnI GATC 7 cut(s) 165, 236, 405, 892, 1050, 1148, 1398
DpnII GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
DraI TTTAAA 1 cut(s) 904
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 2 cut(s) 1252, 1384
Eco130I CCWWGG 4 cut(s) 311, 339, 721, 1169
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 1254, 1386
Eco47I GGWCC 1 cut(s) 1095
Eco47III AGCGCT 1 cut(s) 283
Eco53kI GAGCTC 2 cut(s) 1252, 1384
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 2 cut(s) 1252, 1384
EcoO109I RGGNCCY 2 cut(s) 398, 1095
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 4 cut(s) 311, 339, 721, 1169
EcoT38I GRGCYC 2 cut(s) 1254, 1386
ErhI CCWWGG 4 cut(s) 311, 339, 721, 1169
Esp3I CGTCTC 1 cut(s) 875
FauI CCCGC 1 cut(s) 465
FauNDI CATATG 2 cut(s) 120, 214
FbaI TGATCA 2 cut(s) 163, 1048
FokI GGATG 7 cut(s) 392, 751, 959, 974, 1046, 1052, 1201
FriOI GRGCYC 2 cut(s) 1254, 1386
FspBI CTAG 3 cut(s) 17, 62, 747
GlaI GCGC 1 cut(s) 283
GsaI CCCAGC 1 cut(s) 820
GsuI CTGGAG 1 cut(s) 762
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 60, 399, 720, 1069
HapII CCGG 2 cut(s) 770, 1464
HhaI GCGC 1 cut(s) 284
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 3 cut(s) 601, 953, 1165
HpaII CCGG 2 cut(s) 770, 1464
HphI GGTGA 8 cut(s) 167, 179, 229, 299, 300, 568, 1397, 1453
Hpy166II GTNNAC 2 cut(s) 330, 1228
Hpy188I TCNGA 6 cut(s) 105, 394, 784, 844, 880, 958
Hpy188III TCNNGA 3 cut(s) 35, 48, 1052
Hpy8I GTNNAC 2 cut(s) 330, 1228
HpyAV CCTTC 8 cut(s) 389, 481, 637, 789, 977, 989, 1332, 1372
HpyCH4III ACNGT 2 cut(s) 713, 730
HpyCH4V TGCA 9 cut(s) 76, 124, 197, 442, 588, 757, 796, 1117, 1402
HpyF3I CTNAG 4 cut(s) 102, 242, 507, 1317
HspAI GCGC 1 cut(s) 282
KpnI GGTACC 1 cut(s) 211
Ksp22I TGATCA 2 cut(s) 163, 1048
Kzo9I GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
LmnI GCTCC 3 cut(s) 743, 1213, 1381
LweI GCATC 2 cut(s) 1104, 1411
MaeI CTAG 3 cut(s) 17, 62, 747
MalI GATC 7 cut(s) 165, 236, 405, 892, 1050, 1148, 1398
MboI GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
MfeI CAATTG 3 cut(s) 791, 1121, 1208
MflI RGATCY 1 cut(s) 890
MhlI GDGCHC 2 cut(s) 1254, 1386
MlyI GAGTC 1 cut(s) 1174
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 3 cut(s) 654, 903, 1278
MslI CAYNNNNRTG 3 cut(s) 362, 1026, 1032
MspI CCGG 2 cut(s) 770, 1464
MspR9I CCNGG 2 cut(s) 261, 770
MunI CAATTG 3 cut(s) 791, 1121, 1208
Mva1269I GAATGC 1 cut(s) 1362
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 472
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 4 cut(s) 311, 339, 721, 1169
NdeI CATATG 2 cut(s) 120, 214
NdeII GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
NheI GCTAGC 1 cut(s) 746
NlaIV GGNNCC 4 cut(s) 6, 209, 892, 1096
PagI TCATGA 1 cut(s) 1051
PceI AGGCCT 1 cut(s) 60
PctI GAATGC 1 cut(s) 1362
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 601, 953
PleI GAGTC 1 cut(s) 1173
PpsI GAGTC 1 cut(s) 1173
PpuMI RGGWCCY 1 cut(s) 1095
Psp124BI GAGCTC 2 cut(s) 1254, 1386
Psp5II RGGWCCY 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 816
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 6, 209, 892, 1096
PspPI GGNCC 2 cut(s) 398, 1095
PspPPI RGGWCCY 1 cut(s) 1095
PsrI GAACNNNNNNTAC 4 cut(s) 530, 562, 1220, 1252
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 890
RsaI GTAC 2 cut(s) 209, 548
RsaNI GTAC 2 cut(s) 208, 547
RseI CAYNNNNRTG 3 cut(s) 362, 1026, 1032
SacI GAGCTC 2 cut(s) 1254, 1386
SaqAI TTAA 3 cut(s) 654, 903, 1278
Sau3AI GATC 7 cut(s) 163, 234, 403, 890, 1048, 1146, 1396
Sau96I GGNCC 2 cut(s) 398, 1095
SchI GAGTC 1 cut(s) 1174
ScrFI CCNGG 2 cut(s) 261, 770
SduI GDGCHC 2 cut(s) 1254, 1386
SfaNI GCATC 2 cut(s) 1104, 1411
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 1095
SmiMI CAYNNNNRTG 3 cut(s) 362, 1026, 1032
SmlI CTYRAG 2 cut(s) 1268, 1343
SmoI CTYRAG 2 cut(s) 1268, 1343
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 3 cut(s) 472, 717, 750
SspMI CTAG 3 cut(s) 17, 62, 747
SstI GAGCTC 2 cut(s) 1254, 1386
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 259, 768
StyI CCWWGG 4 cut(s) 311, 339, 721, 1169
TaaI ACNGT 2 cut(s) 713, 730
TaqI TCGA 4 cut(s) 1004, 1248, 1254, 1386
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 2 cut(s) 601, 953
Tru1I TTAA 3 cut(s) 654, 903, 1278
Tru9I TTAA 3 cut(s) 654, 903, 1278
TscAI CASTG 4 cut(s) 250, 733, 1135, 1190
TspDTI ATGAA 9 cut(s) 171, 264, 270, 338, 656, 824, 948, 1068, 1205
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 250, 733, 1135, 1190
VpaK11BI GGWCC 1 cut(s) 1095
XapI RAATTY 2 cut(s) 667, 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 3 cut(s) 17, 62, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.