pycom12g09810
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013052
Physical Location & Seq
Reverse (-)
11670391 .. 11671788
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09810.1

Sequence Viewer

Length: 1398 bp
ATGCTTGGCCTGGAAATGCCTTTGCACCAAAATACCCAAAACCCCCAAAACCCTCACCACCATATGCACCAACCCCAAATGGTTGCCTATGCCCCCCACCATGACCCCGACAACCACCAAAACCCTCACCAATCTGTGAAACAGGGGCACCCATTTGCACCCAAATCCAAACAAATTGCCCTCAGTGATGATGACGAACCCGGTTTCGGTGCTGATGACAACAGCAATGGGGATAACAAGAAGAAGATATCGCCATGGCAGAGAATGAAGTGGACCGACACCATGGTGAGGCTCCTGATCATGGCTGTGTTTTACATTGGTGACGACGCTTCTGATGGCCCTGATCCTACAGGCAAGAAGAAGCCTGCTGGTGGGTTGCTGCAGAAGAAAGGGAAGTGGAAATCGGTGTCCCGAGCTATGGTGGAGAAGGGTTTCTACGTGTCGCCGCAGCAATGTGAGGACAAGTTCAACGATTTGAATAAGAGGTATAAGAGGGTTAATGATATTCTTGGGAAGGGGGCAGCTTGCCGGGTTGTGGAGAATCAGGGCTTGTTGGAAAAGATGGATTTGGCACCAAAGATGAAGGAAGAAGTTCGTAAATTGATGAATTCGAAGCACCTGTTTTTCAGAGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGAACTGTTAGTGGTGGGTCTAATGGCGCGCATAACTCCCCGCCAGAGGTGGCCACAGAGCCGTCTGAGATTCCAGTGTGGCCGCAGCCGCACGAGCAGCTCCAGCAGCGGAGATGCTTTCATTCGTCAGAAAATGCTCAAGCGGTTACCAATTCAGGAAGGTCAGAGACCGAGGGATCCAAGGTAATAAAAGGAGGAAGTGAGGACGAAGATGAAGACTACGAGGACGATGATTCGGATGACGAGGTGGTTCGAGGTGGTTCTAAAGGTCACATGGGGCATGGAAATCACGAAGACAACGATGACAACGATGAAAGAGCTCCCCAAAAAGTGCCAAGAAAGGAAGGCTGTTTTTCGGGGTCGTCCTCATCCACCCAATTAATGCAGCAATTGAACTGTGAGGTGAGGGTTGTGCTGCAAGATGTGTCAAAGACCGCGTGGGAGAAGAAGCAGTGGTTGAAAACAAGGATGATACAATTGGAGGAACAGCAAGTGAGCTACCAACACCGAGCTTTCGAGCTCGAGAAGCAGAGGCTCATGTGGATCAAGTACAGTGGGAAGAAGGAAAGGTACATGGAGAGAGGCAAGCTTGAGAACGAGCGAAGGCGACTTGAGAACGAGAGGATGCTATTGGTCGTCCGCGGGAATGAGCTCGAGTTGCTGGAGCTTCATCACCAGCAGCAGCAACAGAATTCTTCAAACAAAAGAAGTGATCCATCTTCCCCCACTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

466

Amino Acids

52.99

Weight (kDa)

6.53

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 88 - 178 4.2e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013052)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10040
fragaria_vesca FvH4_6g17470
malus_domestica MD12G1096800.v1.1 MD14G1094300.v1.1
prunus_persica Prupe.7G120800_v2.0.a1
pyrus_communis pycom12g09810 pycom14g09210
rosa_chinensis RchiOBHm_Chr3g0471711
rosa_laevigata RLG00000024140
rosa_multiflora Rmu_sc0005631.1_g000025 Rmu_sc0026537.1_g000004
rosa_roxburghii Rroxscaffold_6G00409620
rosa_rugosa Rorug03G0118900
rosa_samantha Rh3AG170500 Rh3BG196200 Rh3CG186900 Rh3DG178800
rosa_wichuraiana Rw0G009030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 147, 571
AccII CGCG 3 cut(s) 692, 1100, 1305
AciI CCGC 9 cut(s) 446, 704, 746, 752, 772, 806, 1098, 1303, 1305
AclWI GGATC 5 cut(s) 338, 834, 847, 1214, 1370
AcoI YGGCCR 2 cut(s) 714, 743
AcsI RAATTY 2 cut(s) 607, 1354
AfaI GTAC 2 cut(s) 1214, 1235
AfiI CCNNNNNNNGG 7 cut(s) 206, 288, 301, 371, 418, 535, 709
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 5 cut(s) 469, 478, 1057, 1123, 1362
AjnI CCWGG 1 cut(s) 9
AleI CACNNNNGTG 1 cut(s) 284
Alw21I GWGCWC 3 cut(s) 985, 1185, 1317
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 5 cut(s) 338, 834, 847, 1214, 1370
Ama87I CYCGRG 3 cut(s) 411, 1184, 1316
AoxI GGCC 4 cut(s) 7, 337, 714, 743
ApoI RAATTY 2 cut(s) 607, 1354
AseI ATTAAT 1 cut(s) 1043
Asp700I GAANNNNTTC 2 cut(s) 431, 591
AspLEI GCGC 2 cut(s) 692, 694
AspS9I GGNCC 2 cut(s) 273, 338
AsuC2I CCSGG 2 cut(s) 201, 530
AsuHPI GGTGA 6 cut(s) 47, 119, 298, 332, 1078, 1328
AsuII TTCGAA 1 cut(s) 611
AvaI CYCGRG 3 cut(s) 411, 1184, 1316
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 716
BamHI GGATCC 1 cut(s) 839
BanI GGYRCC 2 cut(s) 147, 571
BanII GRGCYC 3 cut(s) 985, 1185, 1317
BarI GAAGNNNNNNTAC 4 cut(s) 419, 451, 1217, 1249
BauI CACGAG 1 cut(s) 755
BbsI GAAGAC 2 cut(s) 885, 963
Bbv12I GWGCWC 3 cut(s) 985, 1185, 1317
BccI CCATC 3 cut(s) 329, 556, 1387
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 2 cut(s) 201, 530
BcoDI GTCTC 1 cut(s) 824
BfmI CTRYAG 2 cut(s) 348, 380
Bme1390I CCNGG 3 cut(s) 11, 201, 530
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 3 cut(s) 411, 1184, 1316
BmgT120I GGNCC 2 cut(s) 273, 338
BmiI GGNNCC 4 cut(s) 149, 293, 573, 841
BmrFI CCNGG 3 cut(s) 11, 201, 530
BmsI GCATC 2 cut(s) 767, 1278
BpiI GAAGAC 2 cut(s) 885, 963
BpmI CTGGAG 2 cut(s) 749, 1346
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 3 cut(s) 786, 1274, 1295
BpuMI CCSGG 2 cut(s) 201, 530
BsaAI YACGTR 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 5 cut(s) 254, 282, 834, 843, 1303
Bsc4I CCNNNNNNNGG 7 cut(s) 206, 288, 301, 371, 418, 535, 709
Bse1I ACTGG 2 cut(s) 737, 1396
Bse3DI GCAATG 2 cut(s) 232, 458
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 5 cut(s) 254, 282, 834, 843, 1303
BseGI GGATG 4 cut(s) 907, 1031, 1137, 1293
BseLI CCNNNNNNNGG 7 cut(s) 206, 288, 301, 371, 418, 535, 709
BseMI GCAATG 2 cut(s) 232, 458
BseMII CTCAG 2 cut(s) 196, 720
BseNI ACTGG 2 cut(s) 737, 1396
BsePI GCGCGC 1 cut(s) 690
BseSI GKGCMC 1 cut(s) 150
Bsh1236I CGCG 3 cut(s) 692, 1100, 1305
BshFI GGCC 4 cut(s) 9, 339, 716, 745
BshNI GGYRCC 2 cut(s) 147, 571
BsiHKAI GWGCWC 3 cut(s) 985, 1185, 1317
BsiHKCI CYCGRG 3 cut(s) 411, 1184, 1316
BsiSI CCGG 2 cut(s) 201, 529
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 7 cut(s) 206, 288, 301, 371, 418, 535, 709
BsmAI GTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 4 cut(s) 9, 339, 716, 745
Bso31I GGTCTC 1 cut(s) 824
BsoBI CYCGRG 3 cut(s) 411, 1184, 1316
Bsp119I TTCGAA 1 cut(s) 611
Bsp1286I GDGCHC 4 cut(s) 150, 985, 1185, 1317
Bsp143I GATC 5 cut(s) 297, 343, 839, 1206, 1375
Bsp19I CCATGG 2 cut(s) 254, 282
BspACI CCGC 9 cut(s) 446, 704, 746, 752, 772, 806, 1098, 1303, 1305
BspANI GGCC 4 cut(s) 9, 339, 716, 745
BspCNI CTCAG 2 cut(s) 195, 721
BspFNI CGCG 3 cut(s) 692, 1100, 1305
BspLI GGNNCC 4 cut(s) 149, 293, 573, 841
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 5 cut(s) 338, 834, 847, 1214, 1370
BspT104I TTCGAA 1 cut(s) 611
BspT107I GGYRCC 2 cut(s) 147, 571
BspTNI GGTCTC 1 cut(s) 824
BsrDI GCAATG 2 cut(s) 232, 458
BsrI ACTGG 2 cut(s) 737, 1396
BssECI CCNNGG 5 cut(s) 254, 282, 834, 843, 1303
BssHII GCGCGC 1 cut(s) 690
BssMI GATC 5 cut(s) 297, 343, 839, 1206, 1375
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 3 cut(s) 254, 282, 843
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 3 cut(s) 670, 1061, 1217
BstBAI YACGTR 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 4 cut(s) 366, 526, 692, 1250
BstDEI CTNAG 2 cut(s) 182, 729
BstDSI CCRYGG 3 cut(s) 254, 282, 1303
BstEII GGTNACC 1 cut(s) 808
BstF5I GGATG 4 cut(s) 907, 1031, 1137, 1293
BstFNI CGCG 3 cut(s) 692, 1100, 1305
BstHHI GCGC 2 cut(s) 692, 694
BstKTI GATC 5 cut(s) 300, 346, 842, 1209, 1378
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 5 cut(s) 297, 343, 839, 1206, 1375
BstMWI GCNNNNNNNGC 7 cut(s) 751, 757, 760, 766, 769, 1189, 1321
BstNI CCWGG 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 808
BstSCI CCNGG 3 cut(s) 9, 199, 528
BstSFI CTRYAG 2 cut(s) 348, 380
BstSLI GKGCMC 1 cut(s) 150
BstUI CGCG 3 cut(s) 692, 1100, 1305
BstV2I GAAGAC 2 cut(s) 885, 963
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
BsuRI GGCC 4 cut(s) 9, 339, 716, 745
BtgI CCRYGG 3 cut(s) 254, 282, 1303
BtsCI GGATG 4 cut(s) 907, 1031, 1137, 1293
BtsI GCAGTG 1 cut(s) 1121
BtsIMutI CAGTG 5 cut(s) 190, 744, 1121, 1222, 1389
Cac8I GCNNGC 4 cut(s) 366, 526, 692, 1250
CfoI GCGC 2 cut(s) 692, 694
Cfr13I GGNCC 2 cut(s) 273, 338
Cfr42I CCGCGG 1 cut(s) 1306
CseI GACGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 1213, 1234
CspCI CAANNNNNGTGG 2 cut(s) 1198, 1233
CviAII CATG 9 cut(s) 101, 255, 283, 301, 662, 937, 944, 1201, 1237
CviQI GTAC 2 cut(s) 1213, 1234
DdeI CTNAG 2 cut(s) 182, 729
DpnI GATC 5 cut(s) 299, 345, 841, 1208, 1377
DpnII GATC 5 cut(s) 297, 343, 839, 1206, 1375
EaeI YGGCCR 2 cut(s) 714, 743
Ecl136II GAGCTC 3 cut(s) 983, 1183, 1315
Eco130I CCWWGG 3 cut(s) 254, 282, 843
Eco24I GRGCYC 3 cut(s) 985, 1185, 1317
Eco31I GGTCTC 1 cut(s) 824
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 3 cut(s) 983, 1183, 1315
Eco88I CYCGRG 3 cut(s) 411, 1184, 1316
Eco91I GGTNACC 1 cut(s) 808
EcoICRI GAGCTC 3 cut(s) 983, 1183, 1315
EcoO65I GGTNACC 1 cut(s) 808
EcoRI GAATTC 2 cut(s) 607, 1354
EcoRII CCWGG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 249
EcoT14I CCWWGG 3 cut(s) 254, 282, 843
EcoT38I GRGCYC 3 cut(s) 985, 1185, 1317
ErhI CCWWGG 3 cut(s) 254, 282, 843
FaeI CATG 9 cut(s) 104, 258, 286, 304, 665, 940, 947, 1204, 1240
FaqI GGGAC 1 cut(s) 394
FatI CATG 9 cut(s) 100, 254, 282, 300, 661, 936, 943, 1200, 1236
FauI CCCGC 2 cut(s) 711, 1298
FauNDI CATATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 297
FokI GGATG 4 cut(s) 914, 1018, 1144, 1300
FriOI GRGCYC 3 cut(s) 985, 1185, 1317
GlaI GCGC 2 cut(s) 691, 693
GsuI CTGGAG 2 cut(s) 749, 1346
HaeIII GGCC 4 cut(s) 9, 339, 716, 745
HapII CCGG 2 cut(s) 201, 529
HgaI GACGC 1 cut(s) 335
HhaI GCGC 2 cut(s) 692, 694
Hin1II CATG 9 cut(s) 104, 258, 286, 304, 665, 940, 947, 1204, 1240
Hin6I GCGC 2 cut(s) 690, 692
HinP1I GCGC 2 cut(s) 690, 692
HindIII AAGCTT 1 cut(s) 1250
HinfI GANTC 3 cut(s) 541, 733, 896
HpaII CCGG 2 cut(s) 201, 529
HphI GGTGA 6 cut(s) 47, 119, 298, 332, 1078, 1328
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 6 cut(s) 334, 629, 730, 793, 829, 901
Hpy188III TCNNGA 5 cut(s) 295, 411, 819, 953, 1186
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 7 cut(s) 421, 508, 577, 816, 1001, 1219, 1260
HpyCH4III ACNGT 3 cut(s) 670, 1061, 1217
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 25, 67, 158, 382, 1048, 1081
HpyF10VI GCNNNNNNNGC 7 cut(s) 751, 757, 760, 766, 769, 1189, 1321
HpyF3I CTNAG 2 cut(s) 182, 729
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 9 cut(s) 104, 258, 286, 304, 665, 940, 947, 1204, 1240
HspAI GCGC 2 cut(s) 690, 692
Ksp22I TGATCA 1 cut(s) 297
KspI CCGCGG 1 cut(s) 1306
Kzo9I GATC 5 cut(s) 297, 343, 839, 1206, 1375
LmnI GCTCC 4 cut(s) 297, 768, 988, 1327
LweI GCATC 2 cut(s) 767, 1278
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 320, 808, 932
MalI GATC 5 cut(s) 299, 345, 841, 1208, 1377
MboI GATC 5 cut(s) 297, 343, 839, 1206, 1375
MfeI CAATTG 2 cut(s) 1052, 1139
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 4 cut(s) 150, 985, 1185, 1317
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 8 cut(s) 174, 599, 607, 814, 1040, 1052, 1139, 1354
MluNI TGGCCA 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 534
Mox20I TGGCCA 1 cut(s) 716
MroXI GAANNNNTTC 2 cut(s) 431, 591
MscI TGGCCA 1 cut(s) 716
MseI TTAA 2 cut(s) 498, 1043
MslI CAYNNNNRTG 2 cut(s) 284, 305
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 772, 1305
MspI CCGG 2 cut(s) 201, 529
MspR9I CCNGG 3 cut(s) 11, 201, 530
MunI CAATTG 2 cut(s) 1052, 1139
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 3 cut(s) 692, 1100, 1305
MwoI GCNNNNNNNGC 7 cut(s) 751, 757, 760, 766, 769, 1189, 1321
NciI CCSGG 2 cut(s) 201, 530
NcoI CCATGG 2 cut(s) 254, 282
NdeI CATATG 1 cut(s) 63
NdeII GATC 5 cut(s) 297, 343, 839, 1206, 1375
NlaIII CATG 9 cut(s) 104, 258, 286, 304, 665, 940, 947, 1204, 1240
NlaIV GGNNCC 4 cut(s) 149, 293, 573, 841
NmuCI GTSAC 2 cut(s) 320, 932
NspV TTCGAA 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 284
PaeR7I CTCGAG 2 cut(s) 1184, 1316
PauI GCGCGC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 960, 969
PdmI GAANNNNTTC 2 cut(s) 431, 591
PfeI GAWTC 3 cut(s) 541, 733, 896
Ppu21I YACGTR 1 cut(s) 439
PshBI ATTAAT 1 cut(s) 1043
Psp124BI GAGCTC 3 cut(s) 985, 1185, 1317
Psp6I CCWGG 1 cut(s) 9
PspEI GGTNACC 1 cut(s) 808
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 4 cut(s) 149, 293, 573, 841
PspPI GGNCC 2 cut(s) 273, 338
PspXI VCTCGAGB 1 cut(s) 1316
PstI CTGCAG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 839
PteI GCGCGC 1 cut(s) 690
RsaI GTAC 2 cut(s) 1214, 1235
RsaNI GTAC 2 cut(s) 1213, 1234
RseI CAYNNNNRTG 2 cut(s) 284, 305
SacI GAGCTC 3 cut(s) 985, 1185, 1317
SacII CCGCGG 1 cut(s) 1306
SaqAI TTAA 2 cut(s) 498, 1043
Sau3AI GATC 5 cut(s) 297, 343, 839, 1206, 1375
Sau96I GGNCC 2 cut(s) 273, 338
ScrFI CCNGG 3 cut(s) 11, 201, 530
SduI GDGCHC 4 cut(s) 150, 985, 1185, 1317
SfaNI GCATC 2 cut(s) 767, 1278
SfcI CTRYAG 2 cut(s) 348, 380
Sfr274I CTCGAG 2 cut(s) 1184, 1316
Sfr303I CCGCGG 1 cut(s) 1306
SfuI TTCGAA 1 cut(s) 611
SgrBI CCGCGG 1 cut(s) 1306
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 2 cut(s) 1184, 1316
SmiMI CAYNNNNRTG 2 cut(s) 284, 305
SmlI CTYRAG 5 cut(s) 801, 1184, 1253, 1274, 1316
SmoI CTYRAG 5 cut(s) 801, 1184, 1253, 1274, 1316
Sse9I AATT 8 cut(s) 174, 599, 607, 814, 1040, 1052, 1139, 1354
SsiI CCGC 9 cut(s) 446, 704, 746, 752, 772, 806, 1098, 1303, 1305
SstI GAGCTC 3 cut(s) 985, 1185, 1317
StyD4I CCNGG 3 cut(s) 9, 199, 528
StyI CCWWGG 3 cut(s) 254, 282, 843
TaaI ACNGT 3 cut(s) 670, 1061, 1217
TaiI ACGT 1 cut(s) 441
TaqI TCGA 5 cut(s) 611, 916, 1179, 1185, 1317
TaqII GACCGA 2 cut(s) 290, 848
TasI AATT 8 cut(s) 174, 599, 607, 814, 1040, 1052, 1139, 1354
TatI WGTACW 1 cut(s) 1212
TauI GCSGC 3 cut(s) 448, 748, 754
TfiI GAWTC 3 cut(s) 541, 733, 896
Tru1I TTAA 2 cut(s) 498, 1043
Tru9I TTAA 2 cut(s) 498, 1043
TscAI CASTG 5 cut(s) 190, 744, 1121, 1222, 1396
TseFI GTSAC 2 cut(s) 320, 932
Tsp45I GTSAC 2 cut(s) 320, 932
TspDTI ATGAA 7 cut(s) 281, 596, 620, 773, 891, 990, 1322
TspRI CASTG 5 cut(s) 190, 744, 1121, 1222, 1396
VpaK11BI GGWCC 1 cut(s) 273
VspI ATTAAT 1 cut(s) 1043
XapI RAATTY 2 cut(s) 607, 1354
XhoI CTCGAG 2 cut(s) 1184, 1316
XmnI GAANNNNTTC 2 cut(s) 431, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.