AT3G10210

Divergent CRAL/TRIO domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012918
Physical Location & Seq
Reverse (-)
3160089 .. 3161725
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10210.1

Sequence Viewer

Length: 714 bp
ATGGCTGAAGATTTTTCGGTGGTTGTGTTGGCTTCTGATCTAGGAATTGACGCTAGACCCTTCTTGACGAGAAGCGATGACGTTGATGAACAAGAAAACTGGCATGATTGTCCCCAATACTTAGGAGATGAAGATTTCTCTGATCTCGATCTTCTCCAGTTCTTTACTCTCCAGGGCTTGGATAGGTCCGGTAACCGGATTTTCCGCATCGTCGGAAAGTATTTCCCTGCTCGTGTAGTGAGTGCGGAGCGGCTGAAGAAGTATATATCCCAGAAGATAAGCAACCAATGTCCTGAGGGACCTTTGTGCTTGGTTTACATGCATAGCACAGTCCAAAAGGACGACAATTCACCGGGAATTACCATCTTACGGTGGATTTACGAGGACCTTCCTTCAGATATCAAAGACAGGCTTCAACTTGTTTATTTCATCCACCCTGGTCTTCGTTCAAGACTTGTCATTGCCACTCTTGGCCGCCTTCTTTTAAGTGGAGGACTGTACTGGAAGATTAAGTACGTGAGCAGGTTGCAGTACCTTTGGGAGGACATAAAGAAAGGCGAGGTGGAAATTCCCGACTTTGTGAAGAACCATGACAATGTGCTCGAGCATAGACCATTAACGGACTATGGAATCGAACCGGATCCTTTCCAGTTAAGCGAGGTTCAATCTTCATCGTTCTCTCTCAACCGCTACGAGAACAGATGGGTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

237

Amino Acids

27.54

Weight (kDa)

5.08

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 64 - 198 1.1e-29 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10210
fragaria_vesca FvH4_6g25120
malus_domestica MD00G1048900.v1.1 MD00G1074100.v1.1
prunus_persica Prupe.7G046200_v2.0.a1 Prupe.7G046200_v2.0.a1
pyrus_communis pycom12g07670
rosa_chinensis RchiOBHm_Chr2g0124961
rosa_laevigata RLG00000018840
rosa_multiflora Rmu_sc0008068.1_g000005
rosa_roxburghii Rroxscaffold_2G00118490 Rroxscaffold_2G00118790
rosa_rugosa Rorug02G0254500
rosa_samantha Rh2AG313100 Rh2BG321300 Rh2CG302600 Rh2DG338700
rosa_wichuraiana Rw2G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 513
AccB7I CCANNNNNTGG 1 cut(s) 178
AccBSI CCGCTC 1 cut(s) 250
AciI CCGC 5 cut(s) 205, 245, 250, 475, 688
AclWI GGATC 2 cut(s) 635, 648
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 3 cut(s) 27, 275, 378
AfaI GTAC 3 cut(s) 500, 515, 533
AfiI CCNNNNNNNGG 4 cut(s) 178, 195, 369, 541
AgsI TTSAA 3 cut(s) 416, 450, 665
AjnI CCWGG 2 cut(s) 171, 436
Alw21I GWGCWC 1 cut(s) 603
AlwI GGATC 2 cut(s) 635, 648
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 567
AspS9I GGNCC 3 cut(s) 186, 299, 385
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 342
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 3 cut(s) 186, 299, 385
AxyI CCTNAGG 1 cut(s) 294
BamHI GGATCC 1 cut(s) 640
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 603
BccI CCATC 2 cut(s) 371, 696
BciT130I CCWGG 2 cut(s) 173, 438
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 2 cut(s) 41, 54
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 2 cut(s) 251, 475
BlsI GCNGC 2 cut(s) 252, 476
Bme1390I CCNGG 3 cut(s) 173, 354, 438
Bme18I GGWCC 3 cut(s) 186, 299, 385
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 3 cut(s) 186, 299, 385
BmiI GGNNCC 2 cut(s) 300, 642
BmrFI CCNGG 3 cut(s) 173, 354, 438
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 2 cut(s) 140, 155
BpuMI CCSGG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 172, 436
BsaWI WCCGGW 3 cut(s) 188, 195, 637
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 195, 369, 541
Bse1I ACTGG 4 cut(s) 104, 157, 506, 649
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 2 cut(s) 173, 438
BseDI CCNNGG 2 cut(s) 172, 436
BseGI GGATG 1 cut(s) 429
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 4 cut(s) 178, 195, 369, 541
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 104, 157, 506, 649
BshFI GGCC 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 4 cut(s) 189, 196, 353, 638
BslFI GGGAC 2 cut(s) 96, 312
BslI CCNNNNNNNGG 4 cut(s) 178, 195, 369, 541
BsmFI GGGAC 2 cut(s) 96, 312
BsnI GGCC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 4 cut(s) 37, 142, 148, 640
BspACI CCGC 5 cut(s) 205, 245, 250, 475, 688
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 300, 642
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 2 cut(s) 635, 648
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 4 cut(s) 104, 157, 506, 649
BssECI CCNNGG 2 cut(s) 172, 436
BssMI GATC 4 cut(s) 37, 142, 148, 640
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 173, 438
Bst4CI ACNGT 3 cut(s) 331, 372, 498
BstBAI YACGTR 1 cut(s) 517
BstDEI CTNAG 2 cut(s) 121, 294
BstEII GGTNACC 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 429
BstKTI GATC 4 cut(s) 40, 145, 151, 643
BstMBI GATC 4 cut(s) 37, 142, 148, 640
BstNI CCWGG 2 cut(s) 173, 438
BstNSI RCATGY 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 171, 352, 436
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 513
Cfr13I GGNCC 3 cut(s) 186, 299, 385
CseI GACGC 1 cut(s) 59
Csp6I GTAC 3 cut(s) 499, 514, 532
CviAII CATG 3 cut(s) 104, 319, 590
CviJI RGCY 6 cut(s) 5, 32, 177, 253, 412, 474
CviKI_1 RGCY 6 cut(s) 5, 32, 177, 253, 412, 474
CviQI GTAC 3 cut(s) 499, 514, 532
DdeI CTNAG 2 cut(s) 121, 294
DpnI GATC 4 cut(s) 39, 144, 150, 642
DpnII GATC 4 cut(s) 37, 142, 148, 640
EaeI YGGCCR 1 cut(s) 472
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 3 cut(s) 186, 299, 385
Eco57I CTGAAG 3 cut(s) 27, 275, 378
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoO109I RGGNCCY 2 cut(s) 299, 385
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 171, 436
EcoRV GATATC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 3 cut(s) 107, 322, 593
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 2 cut(s) 96, 312
FatI CATG 3 cut(s) 103, 318, 589
Fnu4HI GCNGC 2 cut(s) 251, 475
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 2 cut(s) 251, 475
FspBI CTAG 2 cut(s) 41, 54
GluI GCNGC 2 cut(s) 251, 475
GsuI CTGGAG 2 cut(s) 140, 155
HaeIII GGCC 1 cut(s) 474
HapII CCGG 4 cut(s) 189, 196, 353, 638
HgaI GACGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 107, 322, 593
HinfI GANTC 1 cut(s) 630
HpaII CCGG 4 cut(s) 189, 196, 353, 638
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 37, 142, 215, 397
Hpy188III TCNNGA 5 cut(s) 64, 146, 293, 450, 572
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 4 cut(s) 70, 398, 402, 488
HpyCH4III ACNGT 3 cut(s) 331, 372, 498
HpyCH4IV ACGT 2 cut(s) 81, 516
HpyCH4V TGCA 2 cut(s) 322, 529
HpyF3I CTNAG 2 cut(s) 121, 294
HpySE526I ACGT 2 cut(s) 81, 516
Hsp92II CATG 3 cut(s) 107, 322, 593
Kzo9I GATC 4 cut(s) 37, 142, 148, 640
LmnI GCTCC 1 cut(s) 247
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 41, 54
MaeII ACGT 2 cut(s) 81, 516
MaeIII GTNAC 1 cut(s) 191
MalI GATC 4 cut(s) 39, 144, 150, 642
MbiI CCGCTC 1 cut(s) 250
MboI GATC 4 cut(s) 37, 142, 148, 640
MboII GAAGA 9 cut(s) 20, 143, 143, 268, 286, 434, 517, 595, 660
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 4 cut(s) 45, 346, 357, 567
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 6 cut(s) 289, 376, 485, 535, 553, 652
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 4 cut(s) 485, 510, 617, 653
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 4 cut(s) 189, 196, 353, 638
MspR9I CCNGG 3 cut(s) 173, 354, 438
MvaI CCWGG 2 cut(s) 173, 438
NciI CCSGG 1 cut(s) 354
NdeII GATC 4 cut(s) 37, 142, 148, 640
NlaIII CATG 3 cut(s) 107, 322, 593
NlaIV GGNNCC 2 cut(s) 300, 642
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 602
PfeI GAWTC 1 cut(s) 630
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 2 cut(s) 252, 476
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 2 cut(s) 299, 385
Psp5II RGGWCCY 2 cut(s) 299, 385
Psp6I CCWGG 2 cut(s) 171, 436
PspEI GGTNACC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 171, 436
PspN4I GGNNCC 2 cut(s) 300, 642
PspPI GGNCC 3 cut(s) 186, 299, 385
PspPPI RGGWCCY 2 cut(s) 299, 385
PspXI VCTCGAGB 1 cut(s) 602
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 3 cut(s) 500, 515, 533
RsaNI GTAC 3 cut(s) 499, 514, 532
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 4 cut(s) 485, 510, 617, 653
SatI GCNGC 2 cut(s) 251, 475
Sau3AI GATC 4 cut(s) 37, 142, 148, 640
Sau96I GGNCC 3 cut(s) 186, 299, 385
ScrFI CCNGG 3 cut(s) 173, 354, 438
SduI GDGCHC 1 cut(s) 603
SetI ASST 9 cut(s) 84, 188, 304, 390, 519, 527, 537, 564, 663
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 602
SinI GGWCC 3 cut(s) 186, 299, 385
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 4 cut(s) 45, 346, 357, 567
SsiI CCGC 5 cut(s) 205, 245, 250, 475, 688
SspMI CTAG 2 cut(s) 41, 54
StyD4I CCNGG 3 cut(s) 171, 352, 436
TaaI ACNGT 3 cut(s) 331, 372, 498
TaiI ACGT 2 cut(s) 84, 519
TaqI TCGA 3 cut(s) 147, 603, 633
TasI AATT 4 cut(s) 45, 346, 357, 567
TatI WGTACW 1 cut(s) 498
TauI GCSGC 2 cut(s) 253, 477
TfiI GAWTC 1 cut(s) 630
Tru1I TTAA 4 cut(s) 485, 510, 617, 653
Tru9I TTAA 4 cut(s) 485, 510, 617, 653
TspDTI ATGAA 4 cut(s) 102, 144, 418, 660
TspGWI ACGGA 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 3 cut(s) 186, 299, 385
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 1 cut(s) 567
XceI RCATGY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 602
XspI CTAG 2 cut(s) 41, 54
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.