Rorug02G0254500

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012918
Physical Location & Seq
Reverse (-)
26672564 .. 26674255
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0254500.1

Sequence Viewer

Length: 264 bp
ATGAAGCTGACAATCGCTTGGCCGATGGTAGGATCGTGTACCTCACAACGCGCCACCCGCGATGACGCCGTTAGTCACCTCAATTCCTCGTCTCCAGTATCCCTGTGGAGGAAGAAGAGGGTTGCTAGCTACAAGGTGTACACTGTGGAGGGGAAGCTGAAAGGGACTCACAGGAAGAGCTTCAGGTGGCTCAAGGAGACTTGTGGTCTATGGCCGCTTGCATTGGGTGAGTTTTTTGGGGTACAGCAGCTGATTGCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

87

Amino Acids

9.85

Weight (kDa)

10.18

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 37 - 68 1.8e-17 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10210
fragaria_vesca FvH4_6g25120
malus_domestica MD00G1048900.v1.1 MD00G1074100.v1.1
prunus_persica Prupe.7G046200_v2.0.a1 Prupe.7G046200_v2.0.a1
pyrus_communis pycom12g07670
rosa_chinensis RchiOBHm_Chr2g0124961
rosa_laevigata RLG00000018840
rosa_multiflora Rmu_sc0008068.1_g000005
rosa_roxburghii Rroxscaffold_2G00118490 Rroxscaffold_2G00118790
rosa_rugosa Rorug02G0254500
rosa_samantha Rh2AG313100 Rh2BG321300 Rh2CG302600 Rh2DG338700
rosa_wichuraiana Rw2G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 60
AciI CCGC 2 cut(s) 58, 215
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 2 cut(s) 20, 212
AcuI CTGAAG 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 3 cut(s) 40, 140, 243
AfiI CCNNNNNNNGG 2 cut(s) 29, 108
AhdI GACNNNNNGTC 1 cut(s) 204
AluBI AGCT 5 cut(s) 7, 129, 157, 180, 250
AluI AGCT 5 cut(s) 7, 129, 157, 180, 250
Alw26I GTCTC 2 cut(s) 96, 191
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 20, 212
ApeKI GCWGC 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 68, 239
AsuNHI GCTAGC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 96, 191
BfaI CTAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 2 cut(s) 215, 248
BlsI GCNGC 2 cut(s) 216, 249
BmeRI GACNNNNNGTC 1 cut(s) 204
BmtI GCTAGC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 108
Bse1I ACTGG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 29, 108
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 2 cut(s) 51, 60
BshFI GGCC 2 cut(s) 22, 214
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 29, 108
BsmAI GTCTC 2 cut(s) 96, 191
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 2 cut(s) 22, 214
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 2 cut(s) 58, 215
BspANI GGCC 2 cut(s) 22, 214
BspFNI CGCG 2 cut(s) 51, 60
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 95
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 110, 170
BstACI GRCGYC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 127, 219
BstFNI CGCG 2 cut(s) 51, 60
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 35
BstMAI GTCTC 2 cut(s) 96, 191
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstUI CGCG 2 cut(s) 51, 60
BstV1I GCAGC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 22, 214
BtgZI GCGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 127, 219
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 53
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 39, 139, 242
CviJI RGCY 8 cut(s) 7, 22, 129, 157, 180, 190, 214, 250
CviKI_1 RGCY 8 cut(s) 7, 22, 129, 157, 180, 190, 214, 250
CviQI GTAC 3 cut(s) 39, 139, 242
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
DriI GACNNNNNGTC 1 cut(s) 204
EaeI YGGCCR 2 cut(s) 20, 212
Eam1104I CTCTTC 2 cut(s) 110, 170
Eam1105I GACNNNNNGTC 1 cut(s) 204
EarI CTCTTC 2 cut(s) 110, 170
Eco57I CTGAAG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 96
FaiI YATR 1 cut(s) 211
FaqI GGGAC 1 cut(s) 178
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 215, 248
Fsp4HI GCNGC 2 cut(s) 215, 248
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 215, 248
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 22, 214
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 68, 239
Hpy166II GTNNAC 3 cut(s) 39, 139, 141
Hpy8I GTNNAC 3 cut(s) 39, 139, 141
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 221, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 32
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 108, 116, 157, 169
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 3 cut(s) 124, 127, 187
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 6 cut(s) 52, 89, 97, 102, 111, 142
MroXI GAANNNNTTC 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 250
MvnI CGCG 2 cut(s) 51, 60
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 1 cut(s) 32
NheI GCTAGC 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 179
PkrI GCNGC 2 cut(s) 216, 249
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 3 cut(s) 40, 140, 243
RsaNI GTAC 3 cut(s) 39, 139, 242
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 2 cut(s) 215, 248
Sau3AI GATC 1 cut(s) 32
SchI GAGTC 1 cut(s) 160
SetI ASST 9 cut(s) 9, 44, 81, 131, 138, 159, 182, 188, 252
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 82
SsiI CCGC 2 cut(s) 58, 215
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 145
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 217
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.