Rroxscaffold_2G00118790

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012918
Physical Location & Seq
Forward (+)
50658558 .. 50661063
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118790.1

Sequence Viewer

Length: 726 bp
ATGGGGAGCTCACCAAACGACTTCTCGGTGGTGGTACTGCCGTCGGACTATGGAATCGACGCGAGGCCGTTCCTCACGAACCAGGAGAGAGTGTCCTCACAAGAAGATGAAGACCAAGACCAAGACAATTGGCACGACTGTCCTCAGCACCTCCCTTCCGACGAGGACTTCTCCGATCTCGAGCTCTTGCAGTTCTTTCGGCCCCAAGGCCGTGACAAATCTGGAAACCTGATTTTCCGTATCGTCGGAAAATACTTTCCCGCTCCAGTTGTGAGTGGGGATAGGCTAAAGAGGTACATATGCAACAAACTATGCAGTGACTCTCCAGAAGGGCCATACTGCATTGTTTACATGCATAGTACTGTGCAAAAGGAGGATAACTCCCCTGGAATAACTATCTTGAGGTGGATTTATGAAGAACTTCCTAGTTATTTGAAGGATAGGCTTCAAGTTGTGTACTTCATTCACCCTGGACTTCGCTCAAGGCTTGTCTTTGCCACTCTTGGCCGATTTTTCTTAAGTGGAGGCCTATATTGGAAAATCAAGTATGTAAGCCGCCTGCAGTATCTTTGGGATGATATAAAGAAAGGAGAGATTGAGATTCCCGACTTTGTAAAAAATCATGATGATGTTCTTGAGCATAGACCATTAACAGATTATGGGATTGAACCAGACCCTCTTCACATGATTGAGGTGCCATCAACTGCATATTCATTTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

241

Amino Acids

27.97

Weight (kDa)

5.07

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 75 - 210 1.7e-31 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10210
fragaria_vesca FvH4_6g25120
malus_domestica MD00G1048900.v1.1 MD00G1074100.v1.1
prunus_persica Prupe.7G046200_v2.0.a1 Prupe.7G046200_v2.0.a1
pyrus_communis pycom12g07670
rosa_chinensis RchiOBHm_Chr2g0124961
rosa_laevigata RLG00000018840
rosa_multiflora Rmu_sc0008068.1_g000005
rosa_roxburghii Rroxscaffold_2G00118490 Rroxscaffold_2G00118790
rosa_rugosa Rorug02G0254500
rosa_samantha Rh2AG313100 Rh2BG321300 Rh2CG302600 Rh2DG338700
rosa_wichuraiana Rw2G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 263
AccII CGCG 1 cut(s) 62
AciI CCGC 2 cut(s) 261, 556
AcoI YGGCCR 1 cut(s) 505
AfaI GTAC 4 cut(s) 36, 296, 361, 458
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 3 cut(s) 436, 449, 668
AjnI CCWGG 3 cut(s) 81, 385, 469
AluBI AGCT 2 cut(s) 9, 184
AluI AGCT 2 cut(s) 9, 184
Alw21I GWGCWC 2 cut(s) 11, 186
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 6 cut(s) 65, 200, 208, 332, 505, 526
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 201, 332
AsuHPI GGTGA 2 cut(s) 3, 458
AvaI CYCGRG 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BanI GGYRCC 1 cut(s) 694
BanII GRGCYC 2 cut(s) 11, 186
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 11, 186
BbvCI CCTCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 706
BceAI ACGGC 3 cut(s) 25, 52, 195
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 3 cut(s) 83, 387, 471
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 560
BfrI CTTAAG 1 cut(s) 517
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 3 cut(s) 83, 387, 471
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 201, 332
BmiI GGNNCC 2 cut(s) 203, 696
BmrFI CCNGG 3 cut(s) 83, 387, 471
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 4 cut(s) 155, 187, 365, 397
BpmI CTGGAG 2 cut(s) 249, 309
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 3 cut(s) 421, 466, 656
BsaJI CCNNGG 3 cut(s) 205, 385, 469
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 3 cut(s) 83, 387, 471
BseDI CCNNGG 3 cut(s) 205, 385, 469
BseGI GGATG 1 cut(s) 580
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 6 cut(s) 67, 202, 210, 334, 507, 528
BshNI GGYRCC 1 cut(s) 694
BsiHKAI GWGCWC 2 cut(s) 11, 186
BsiHKCI CYCGRG 1 cut(s) 179
BsnI GGCC 6 cut(s) 67, 202, 210, 334, 507, 528
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 11, 186
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 261, 556
BspANI GGCC 6 cut(s) 67, 202, 210, 334, 507, 528
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 203, 696
BspMAI CTGCAG 1 cut(s) 564
BspT107I GGYRCC 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 205, 385, 469
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 3 cut(s) 83, 387, 471
Bst4CI ACNGT 2 cut(s) 140, 364
Bst6I CTCTTC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstNI CCWGG 3 cut(s) 83, 387, 471
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 3 cut(s) 81, 385, 469
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 6 cut(s) 67, 202, 210, 334, 507, 528
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 560
CciI TCATGA 1 cut(s) 622
Cfr13I GGNCC 2 cut(s) 201, 332
CseI GACGC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 35, 295, 360, 457
CviAII CATG 3 cut(s) 352, 623, 685
CviQI GTAC 4 cut(s) 35, 295, 360, 457
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 2 cut(s) 9, 184
Eco130I CCWWGG 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 11, 186
Eco53kI GAGCTC 2 cut(s) 9, 184
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 2 cut(s) 9, 184
EcoRII CCWGG 3 cut(s) 81, 385, 469
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 11, 186
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 3 cut(s) 355, 626, 688
FatI CATG 3 cut(s) 351, 622, 684
FauI CCCGC 1 cut(s) 268
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 556
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 2 cut(s) 11, 186
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 556
GsuI CTGGAG 2 cut(s) 249, 309
HaeIII GGCC 6 cut(s) 67, 202, 210, 334, 507, 528
HgaI GACGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 355, 626, 688
HinfI GANTC 3 cut(s) 54, 320, 601
HphI GGTGA 2 cut(s) 3, 458
Hpy166II GTNNAC 2 cut(s) 349, 457
Hpy188I TCNGA 4 cut(s) 46, 160, 175, 248
Hpy188III TCNNGA 8 cut(s) 76, 179, 222, 326, 400, 605, 623, 635
Hpy8I GTNNAC 2 cut(s) 349, 457
Hpy99I CGWCG 4 cut(s) 46, 62, 164, 248
HpyAV CCTTC 3 cut(s) 165, 323, 430
HpyCH4III ACNGT 2 cut(s) 140, 364
HpyCH4V TGCA 8 cut(s) 190, 303, 315, 342, 355, 367, 562, 707
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 3 cut(s) 355, 626, 688
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 6, 268
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 212, 317
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 175
MboII GAAGA 4 cut(s) 116, 122, 428, 671
MfeI CAATTG 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 11, 186
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 3 cut(s) 24, 183, 226
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 2 cut(s) 518, 650
MslI CAYNNNNRTG 1 cut(s) 627
MspCI CTTAAG 1 cut(s) 517
MspR9I CCNGG 3 cut(s) 83, 387, 471
MunI CAATTG 1 cut(s) 127
MvaI CCWGG 3 cut(s) 83, 387, 471
MvnI CGCG 1 cut(s) 62
NdeI CATATG 1 cut(s) 299
NdeII GATC 1 cut(s) 175
NlaIII CATG 3 cut(s) 355, 626, 688
NlaIV GGNNCC 2 cut(s) 203, 696
NmuCI GTSAC 2 cut(s) 212, 317
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 54, 601
PkrI GCNGC 1 cut(s) 557
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp124BI GAGCTC 2 cut(s) 11, 186
Psp6I CCWGG 3 cut(s) 81, 385, 469
PspGI CCWGG 3 cut(s) 81, 385, 469
PspN4I GGNNCC 2 cut(s) 203, 696
PspPI GGNCC 2 cut(s) 201, 332
PstI CTGCAG 1 cut(s) 564
RsaI GTAC 4 cut(s) 36, 296, 361, 458
RsaNI GTAC 4 cut(s) 35, 295, 360, 457
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 2 cut(s) 11, 186
SaqAI TTAA 2 cut(s) 518, 650
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 201, 332
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 83, 387, 471
SduI GDGCHC 2 cut(s) 11, 186
SetI ASST 7 cut(s) 11, 153, 186, 231, 296, 407, 696
SfcI CTRYAG 1 cut(s) 560
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 5 cut(s) 179, 400, 481, 517, 635
SmoI CTYRAG 5 cut(s) 179, 400, 481, 517, 635
Sse9I AATT 1 cut(s) 127
SseBI AGGCCT 1 cut(s) 528
SsiI CCGC 2 cut(s) 261, 556
SspMI CTAG 1 cut(s) 426
SstI GAGCTC 2 cut(s) 11, 186
StuI AGGCCT 1 cut(s) 528
StyD4I CCNGG 3 cut(s) 81, 385, 469
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 140, 364
TaqI TCGA 2 cut(s) 57, 180
TasI AATT 1 cut(s) 127
TatI WGTACW 2 cut(s) 359, 456
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 2 cut(s) 54, 601
Tru1I TTAA 2 cut(s) 518, 650
Tru9I TTAA 2 cut(s) 518, 650
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 212, 317
Tsp45I GTSAC 2 cut(s) 212, 317
TspDTI ATGAA 4 cut(s) 123, 429, 451, 702
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 1 cut(s) 322
Vha464I CTTAAG 1 cut(s) 517
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 361
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.