FvH4_6g25120

Ganglioside-induced differentiation-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012918
Physical Location & Seq
Reverse (-)
19060689 .. 19063627
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25120.t1

Sequence Viewer

Length: 822 bp
ATGAAACACCTCCTATCTAGTCCCCAAAGCACCAAAGCGAGTGAGGGAAAGCAGAGAGCGATGGGGAGCTCACCAAACGACTTCTCGGTGGTGGTTTTGCCATCCGACTACGGAATCGATTCGAGGCCGTTCCTGACGAACCAACAGCAACAGAGAGTTGTTGCCGAGGAAGATAACGACCAAGAGAACTGGCACGACTGTCCTCAGATCCTCTCCTCCGACGAGGACTTCTCCGATCTCGAGCTCTTGCAGTTCTTCCGTCCCCAAGGCCGTGACAAATCTGGAAACCTCATTTTCCGTATCGTCGGCAAATACTTTCCCGCTCCAGTTGTGAGTGGGGATAGGCTAAAGAGGTACATTTGCAATAAACTATGCAGTGACTCTCCAGAAGGGCCGTACTGCATTGTTTACATGCATAGTACAGTGCAAAAGGAGGATAACTCCCCTGGAATAACTATCTTGAGGTGGATTTATGAAGAACTTCCATCTCATTTGAAGGATAGGCTTCAAGTTGTGTACTTCATTCATCCTGGACTTCGCTCAAGGCTTGTCTTTGCCACTCTTGGCCGATTTTTCTTAAGTGGAGGCCTATATTGGAAAATCAAGTATGTAAGCCGCTTGCAGTACCTTTGGGATGATATAAAGAAGGGAGAGATTGAGATTCCTGATTTTGTGAAAAGTCATGATGATGTTCTTGAGCATAGACCATTGACAGATTACGGGATCGAACCAGACCCTCTTCACATGATTGAGGTGCCAGCAACTGCCTATTCATTTGGAAGGTATGAGGAGAGATGGGCTTCAAGAGAATATACGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO_2

Protein Analysis

274

Amino Acids

31.62

Weight (kDa)

5.65

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_2 PF13716 95 - 230 6.4e-32 Divergent CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10210
fragaria_vesca FvH4_6g25120
malus_domestica MD00G1048900.v1.1 MD00G1074100.v1.1
prunus_persica Prupe.7G046200_v2.0.a1 Prupe.7G046200_v2.0.a1
pyrus_communis pycom12g07670
rosa_chinensis RchiOBHm_Chr2g0124961
rosa_laevigata RLG00000018840
rosa_multiflora Rmu_sc0008068.1_g000005
rosa_roxburghii Rroxscaffold_2G00118490 Rroxscaffold_2G00118790
rosa_rugosa Rorug02G0254500
rosa_samantha Rh2AG313100 Rh2BG321300 Rh2CG302600 Rh2DG338700
rosa_wichuraiana Rw2G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 323
AciI CCGC 2 cut(s) 321, 616
AclWI GGATC 2 cut(s) 202, 731
AcoI YGGCCR 1 cut(s) 565
AfaI GTAC 5 cut(s) 356, 398, 421, 518, 626
AflII CTTAAG 1 cut(s) 577
AgsI TTSAA 3 cut(s) 496, 509, 804
AjnI CCWGG 2 cut(s) 445, 529
AluBI AGCT 2 cut(s) 69, 244
AluI AGCT 2 cut(s) 69, 244
Alw21I GWGCWC 2 cut(s) 71, 246
AlwI GGATC 2 cut(s) 202, 731
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 5 cut(s) 125, 268, 392, 565, 586
Asp700I GAANNNNTTC 2 cut(s) 118, 480
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 754
BanII GRGCYC 2 cut(s) 71, 246
Bbv12I GWGCWC 2 cut(s) 71, 246
BccI CCATC 4 cut(s) 55, 109, 493, 789
BceAI ACGGC 3 cut(s) 112, 255, 379
BciT130I CCWGG 2 cut(s) 447, 531
BfaI CTAG 1 cut(s) 18
BfrI CTTAAG 1 cut(s) 577
BisI GCNGC 1 cut(s) 616
BlsI GCNGC 1 cut(s) 617
Bme1390I CCNGG 2 cut(s) 447, 531
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 2 cut(s) 447, 531
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 425, 457
BpmI CTGGAG 2 cut(s) 309, 369
BpuEI CTTGAG 3 cut(s) 481, 526, 716
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 165, 265, 445
Bse1I ACTGG 2 cut(s) 194, 326
BseBI CCWGG 2 cut(s) 447, 531
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 165, 265, 445
BseGI GGATG 3 cut(s) 101, 526, 640
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 194, 326
BseRI GAGGAG 2 cut(s) 205, 803
BshFI GGCC 5 cut(s) 127, 270, 394, 567, 588
BshNI GGYRCC 1 cut(s) 754
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 71, 246
BsiHKCI CYCGRG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 6, 246
BsmFI GGGAC 2 cut(s) 6, 246
BsnI GGCC 5 cut(s) 127, 270, 394, 567, 588
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 71, 246
Bsp143I GATC 3 cut(s) 207, 235, 723
BspACI CCGC 2 cut(s) 321, 616
BspANI GGCC 5 cut(s) 127, 270, 394, 567, 588
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 117
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 2 cut(s) 202, 731
BspT107I GGYRCC 1 cut(s) 754
BspTI CTTAAG 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 323
BsrI ACTGG 2 cut(s) 194, 326
BssECI CCNNGG 3 cut(s) 165, 265, 445
BssMI GATC 3 cut(s) 207, 235, 723
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 447, 531
Bst4CI ACNGT 2 cut(s) 200, 424
Bst6I CTCTTC 1 cut(s) 744
BstAFI CTTAAG 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 620, 759
BstDEI CTNAG 2 cut(s) 204, 819
BstF5I GGATG 3 cut(s) 101, 526, 640
BstKTI GATC 3 cut(s) 210, 238, 726
BstMBI GATC 3 cut(s) 207, 235, 723
BstNI CCWGG 2 cut(s) 447, 531
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 445, 529
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 5 cut(s) 127, 270, 394, 567, 588
BsuTUI ATCGAT 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 3 cut(s) 101, 526, 640
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 2 cut(s) 382, 429
Cac8I GCNNGC 2 cut(s) 620, 759
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 5 cut(s) 355, 397, 420, 517, 625
CviAII CATG 3 cut(s) 412, 683, 745
CviQI GTAC 5 cut(s) 355, 397, 420, 517, 625
DdeI CTNAG 2 cut(s) 204, 819
DpnI GATC 3 cut(s) 209, 237, 725
DpnII GATC 3 cut(s) 207, 235, 723
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 744
EarI CTCTTC 1 cut(s) 744
Ecl136II GAGCTC 2 cut(s) 69, 244
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 588
Eco24I GRGCYC 2 cut(s) 71, 246
Eco53kI GAGCTC 2 cut(s) 69, 244
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 2 cut(s) 69, 244
EcoRII CCWGG 2 cut(s) 445, 529
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 2 cut(s) 71, 246
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 415, 686, 748
FaqI GGGAC 2 cut(s) 6, 246
FatI CATG 3 cut(s) 411, 682, 744
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 616
FokI GGATG 3 cut(s) 88, 513, 647
FriOI GRGCYC 2 cut(s) 71, 246
Fsp4HI GCNGC 1 cut(s) 616
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 616
GsuI CTGGAG 2 cut(s) 309, 369
HaeIII GGCC 5 cut(s) 127, 270, 394, 567, 588
Hin1II CATG 3 cut(s) 415, 686, 748
HinfI GANTC 4 cut(s) 114, 119, 380, 661
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 409, 517
Hpy188I TCNGA 4 cut(s) 106, 207, 220, 235
Hpy188III TCNNGA 9 cut(s) 133, 239, 282, 386, 460, 665, 683, 695, 804
Hpy8I GTNNAC 2 cut(s) 409, 517
Hpy99I CGWCG 2 cut(s) 224, 308
HpyAV CCTTC 4 cut(s) 383, 490, 640, 774
HpyCH4III ACNGT 2 cut(s) 200, 424
HpyCH4IV ACGT 1 cut(s) 815
HpyCH4V TGCA 7 cut(s) 250, 363, 375, 402, 415, 427, 622
HpyF3I CTNAG 2 cut(s) 204, 819
HpySE526I ACGT 1 cut(s) 815
Hsp92II CATG 3 cut(s) 415, 686, 748
Kzo9I GATC 3 cut(s) 207, 235, 723
LmnI GCTCC 2 cut(s) 66, 328
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 2 cut(s) 272, 377
MalI GATC 3 cut(s) 209, 237, 725
MbiI CCGCTC 1 cut(s) 323
MboI GATC 3 cut(s) 207, 235, 723
MboII GAAGA 4 cut(s) 182, 247, 488, 731
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 71, 246
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 129, 243
Mph1103I ATGCAT 1 cut(s) 417
MroXI GAANNNNTTC 2 cut(s) 118, 480
MseI TTAA 1 cut(s) 578
MslI CAYNNNNRTG 1 cut(s) 687
MspCI CTTAAG 1 cut(s) 577
MspR9I CCNGG 2 cut(s) 447, 531
MvaI CCWGG 2 cut(s) 447, 531
NdeII GATC 3 cut(s) 207, 235, 723
NlaIII CATG 3 cut(s) 415, 686, 748
NlaIV GGNNCC 1 cut(s) 756
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 272, 377
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 239
PagI TCATGA 1 cut(s) 682
PceI AGGCCT 1 cut(s) 588
PdmI GAANNNNTTC 2 cut(s) 118, 480
PfeI GAWTC 3 cut(s) 114, 119, 661
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 1 cut(s) 617
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Psp124BI GAGCTC 2 cut(s) 71, 246
Psp6I CCWGG 2 cut(s) 445, 529
PspGI CCWGG 2 cut(s) 445, 529
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 5 cut(s) 356, 398, 421, 518, 626
RsaNI GTAC 5 cut(s) 355, 397, 420, 517, 625
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 2 cut(s) 71, 246
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 1 cut(s) 616
Sau3AI GATC 3 cut(s) 207, 235, 723
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 447, 531
SduI GDGCHC 2 cut(s) 71, 246
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 5 cut(s) 239, 460, 541, 577, 695
SmoI CTYRAG 5 cut(s) 239, 460, 541, 577, 695
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 2 cut(s) 321, 616
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 2 cut(s) 71, 246
StuI AGGCCT 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 445, 529
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 200, 424
TaiI ACGT 1 cut(s) 818
TaqI TCGA 4 cut(s) 117, 122, 240, 726
TatI WGTACW 2 cut(s) 419, 516
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 3 cut(s) 114, 119, 661
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TscAI CASTG 2 cut(s) 382, 429
TseFI GTSAC 2 cut(s) 272, 377
Tsp45I GTSAC 2 cut(s) 272, 377
TspDTI ATGAA 5 cut(s) 17, 489, 511, 515, 762
TspGWI ACGGA 3 cut(s) 126, 248, 287
TspRI CASTG 2 cut(s) 382, 429
Vha464I CTTAAG 1 cut(s) 577
XceI RCATGY 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 118, 480
XspI CTAG 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.