AT3G11260

homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017539
Physical Location & Seq
Forward (+)
3527280 .. 3528440
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11260.1

Sequence Viewer

Length: 549 bp
ATGTCTTTCTCCGTGAAAGGTCGAAGCTTACGTGGCAACAATAACGGAGGAACGGGGACGAAGTGCGGGAGATGGAATCCAACGGTGGAGCAGTTGAAGATATTGACTGATCTGTTTCGAGCCGGTCTTAGAACTCCAACAACTGATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAATGTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCCATTGATTTTGATCATCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAAGAAGATTGTCAAGAGGAAGAGAAGGTGATAGAGACATTACAACTCTTTCCGGTGAATTCATTTGAAGACTCCAACTCCAAGGTGGACAAAATGAGAGCTAGAGGCAATAACCAGTACCGTGAATATATTCGAGAGACCACCACGACGTCGTTTTCTCCATACTCATCATGTGGAGCTGAAATGGAACATCCACCGCCATTAGATCTTCGATTAAGCTTTCTTTAA

Protein Analysis

182

Amino Acids

21.23

Weight (kDa)

8.42

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 6.9e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017539)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11260
fragaria_vesca FvH4_7g24100 FvH4_7g24100
malus_domestica MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica Prupe.2G247100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0369521
rosa_laevigata RLG00000027122
rosa_multiflora Rmu_ssc0000484.1_g000027
rosa_roxburghii Rroxscaffold_4G00287560
rosa_rugosa Rorug01G0351000
rosa_wichuraiana Rw1G031640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 473
AciI CCGC 2 cut(s) 66, 518
AcsI RAATTY 1 cut(s) 379
AcyI GRCGYC 1 cut(s) 470
AfaI GTAC 1 cut(s) 440
AgsI TTSAA 3 cut(s) 97, 314, 389
AluBI AGCT 5 cut(s) 27, 172, 422, 500, 540
AluI AGCT 5 cut(s) 27, 172, 422, 500, 540
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 350, 452
ApoI RAATTY 1 cut(s) 379
Asp700I GAANNNNTTC 2 cut(s) 206, 450
AsuHPI GGTGA 2 cut(s) 361, 388
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 2 cut(s) 66, 301
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BclI TGATCA 2 cut(s) 145, 274
BcoDI GTCTC 2 cut(s) 350, 452
BfaI CTAG 3 cut(s) 234, 300, 423
BglII AGATCT 2 cut(s) 159, 526
BpiI GAAGAC 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 2 cut(s) 273, 279
BsaHI GRCGYC 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 2 cut(s) 273, 279
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 2 cut(s) 273, 279
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 123, 374
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 350, 452
BsmFI GGGAC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 5 cut(s) 109, 145, 159, 274, 526
BspACI CCGC 2 cut(s) 66, 518
BspCNI CTCAG 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 5 cut(s) 109, 145, 159, 274, 526
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 85, 443
Bst6I CTCTTC 1 cut(s) 336
BstACI GRCGYC 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 128, 173
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 5 cut(s) 112, 148, 162, 277, 529
BstMAI GTCTC 2 cut(s) 350, 452
BstMBI GATC 5 cut(s) 109, 145, 159, 274, 526
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 159, 526
BstYI RGATCY 2 cut(s) 159, 526
BtsCI GGATG 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 122
Csp6I GTAC 1 cut(s) 439
CviAII CATG 1 cut(s) 492
CviJI RGCY 7 cut(s) 27, 122, 172, 233, 422, 500, 540
CviKI_1 RGCY 7 cut(s) 27, 122, 172, 233, 422, 500, 540
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 2 cut(s) 128, 173
DpnI GATC 5 cut(s) 111, 147, 161, 276, 528
DpnII GATC 5 cut(s) 109, 145, 159, 274, 526
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 1 cut(s) 495
FaiI YATR 4 cut(s) 228, 450, 484, 493
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 491
FauI CCCGC 1 cut(s) 59
FbaI TGATCA 2 cut(s) 145, 274
FokI GGATG 1 cut(s) 498
FriOI GRGCYC 1 cut(s) 174
FspBI CTAG 3 cut(s) 234, 300, 423
HapII CCGG 2 cut(s) 123, 374
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 1 cut(s) 495
HindIII AAGCTT 2 cut(s) 25, 538
HinfI GANTC 4 cut(s) 76, 151, 223, 392
HpaII CCGG 2 cut(s) 123, 374
HphI GGTGA 2 cut(s) 361, 388
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 150, 156, 222
Hpy188III TCNNGA 2 cut(s) 335, 455
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 3 cut(s) 255, 472, 475
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 85, 443
HpyCH4IV ACGT 3 cut(s) 31, 250, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 2 cut(s) 128, 173
HpySE526I ACGT 3 cut(s) 31, 250, 470
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 1 cut(s) 495
Ksp22I TGATCA 2 cut(s) 145, 274
Kzo9I GATC 5 cut(s) 109, 145, 159, 274, 526
LmnI GCTCC 3 cut(s) 88, 169, 497
LpnPI CCDG 3 cut(s) 136, 387, 449
MaeI CTAG 3 cut(s) 234, 300, 423
MaeII ACGT 3 cut(s) 31, 250, 470
MalI GATC 5 cut(s) 111, 147, 161, 276, 528
MboI GATC 5 cut(s) 109, 145, 159, 274, 526
MboII GAAGA 7 cut(s) 109, 169, 335, 338, 353, 401, 521
MflI RGATCY 2 cut(s) 159, 526
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 3 cut(s) 104, 161, 420
MnlI CCTC 4 cut(s) 41, 234, 331, 419
MroXI GAANNNNTTC 2 cut(s) 206, 450
MseI TTAA 2 cut(s) 536, 547
MspI CCGG 2 cut(s) 123, 374
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 5 cut(s) 109, 145, 159, 274, 526
NlaIII CATG 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 28
PdmI GAANNNNTTC 2 cut(s) 206, 450
PfeI GAWTC 3 cut(s) 76, 151, 223
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Ppu21I YACGTR 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 174
PsuI RGATCY 2 cut(s) 159, 526
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 536, 547
Sau3AI GATC 5 cut(s) 109, 145, 159, 274, 526
SchI GAGTC 1 cut(s) 386
SduI GDGCHC 1 cut(s) 174
Sse9I AATT 1 cut(s) 379
SsiI CCGC 2 cut(s) 66, 518
SspMI CTAG 3 cut(s) 234, 300, 423
SstI GAGCTC 1 cut(s) 174
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 85, 443
TaiI ACGT 3 cut(s) 34, 253, 473
TaqI TCGA 4 cut(s) 22, 118, 454, 532
TasI AATT 1 cut(s) 379
TfiI GAWTC 3 cut(s) 76, 151, 223
Tru1I TTAA 2 cut(s) 536, 547
Tru9I TTAA 2 cut(s) 536, 547
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 2 cut(s) 60, 182
XapI RAATTY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmnI GAANNNNTTC 2 cut(s) 206, 450
XspI CTAG 3 cut(s) 234, 300, 423
ZraI GACGTC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.