Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0017539

Physical Location & Seq

Genomic Coordinates Reverse (-)

26343294 .. 26344183

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATGAGGGCATGTCAGGGTTTTGCATTAAAGCTGCGAGTTTTCGCGGCAGTGGTGGTGGTGGCAATGGCAATAATAATGGAACCAAGTGCGGGCGTTGGAATCCGACTACTGAACAGGTTAAAGTTCTAACTGACCTGTTCAGGTCTGGACTCCGTACGCCGAGCACTGATCAGATTCAGAAAATCTCCTCTCAGCTAAGCTTTTATGGAAAGATCGAGAGCAAAAACGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGACAGAAACGCCGCAAAGTTTCCATCGATGACAAGGATTTCACTCGTCGAGATCATGACAAGATTTCTTCTCCAAAACAACTAAATCAAGTTTCGGAGCCGGCGAGAGTGATTGAGACCCTTCAACTTTTCCCAGTAAACTCCTTCGACGAATCAGAAGCGGAGAAGATGAGATTTCATGCAAACGAATACTGCAAAGAGGCTACAGCTTTTGCTTACAGGGTTGGGACAGAAATGGACCATCCACCATTGGATCTGCGCTTAAGCTTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

9.15

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11260
fragaria_vesca	FvH4_7g24100 FvH4_7g24100
malus_domestica	MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica	Prupe.2G247100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369521
rosa_laevigata	RLG00000027122
rosa_multiflora	Rmu_ssc0000484.1_g000027
rosa_roxburghii	Rroxscaffold_4G00287560
rosa_rugosa	Rorug01G0351000
rosa_wichuraiana	Rw1G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	48, 93, 280, 428
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	1 cut(s)	528
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflII	CTTAAG	1 cut(s)	529
AgsI	TTSAA	1 cut(s)	392
AluBI	AGCT	5 cut(s)	35, 199, 204, 476, 534
AluI	AGCT	5 cut(s)	35, 199, 204, 476, 534
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	299, 516
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	529
BisI	GCNGC	3 cut(s)	36, 49, 280
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	3 cut(s)	37, 50, 281
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	85, 366
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	294
BseGI	GGATG	2 cut(s)	10, 508
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	368
BsiWI	CGTACG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	172, 216, 319, 520
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	4 cut(s)	48, 93, 280, 428
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	85, 366
BspPI	GGATC	1 cut(s)	528
BspTI	CTTAAG	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	367
BssMI	GATC	4 cut(s)	172, 216, 319, 520
BstAFI	CTTAAG	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	95, 369
BstDEI	CTNAG	2 cut(s)	195, 200
BstF5I	GGATG	2 cut(s)	10, 508
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	4 cut(s)	175, 219, 322, 523
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	172, 216, 319, 520
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	10, 508
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 168
Cac8I	GCNNGC	2 cut(s)	95, 369
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	13, 323, 446
CviJI	RGCY	8 cut(s)	35, 199, 204, 260, 367, 470, 476, 534
CviKI_1	RGCY	8 cut(s)	35, 199, 204, 260, 367, 470, 476, 534
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	2 cut(s)	195, 200
DpnI	GATC	4 cut(s)	174, 218, 321, 522
DpnII	GATC	4 cut(s)	172, 216, 319, 520
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	505
FaeI	CATG	3 cut(s)	16, 326, 449
FaiI	YATR	4 cut(s)	14, 210, 324, 447
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	3 cut(s)	12, 322, 445
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	36, 49, 280
FokI	GGATG	2 cut(s)	17, 495
Fsp4HI	GCNGC	3 cut(s)	36, 49, 280
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	3 cut(s)	36, 49, 280
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	16, 326, 449
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HindIII	AAGCTT	2 cut(s)	202, 532
HinfI	GANTC	5 cut(s)	103, 153, 178, 250, 419
HpaII	CCGG	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	6 cut(s)	108, 177, 183, 249, 364, 424
Hpy188III	TCNNGA	4 cut(s)	150, 220, 317, 323
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	2 cut(s)	318, 419
HpyAV	CCTTC	2 cut(s)	398, 421
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	27, 449, 462
HpyF3I	CTNAG	2 cut(s)	195, 200
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	16, 326, 449
HspAI	GCGC	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	172, 216, 319, 520
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	9 cut(s)	3, 104, 130, 135, 152, 274, 381, 414, 472
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	231
MalI	GATC	4 cut(s)	174, 218, 321, 522
MboI	GATC	4 cut(s)	172, 216, 319, 520
MboII	GAAGA	2 cut(s)	327, 445
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	2 cut(s)	80, 131
MnlI	CCTC	2 cut(s)	202, 460
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	4 cut(s)	30, 123, 530, 541
MspCI	CTTAAG	1 cut(s)	529
MspI	CCGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	369
NdeII	GATC	4 cut(s)	172, 216, 319, 520
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	16, 326, 449
NlaIV	GGNNCC	2 cut(s)	85, 366
NmeAIII	GCCGAG	1 cut(s)	189
NspI	RCATGY	1 cut(s)	16
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	103, 178, 250, 419
Pfl23II	CGTACG	1 cut(s)	158
PkrI	GCNGC	3 cut(s)	37, 50, 281
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	231
PspLI	CGTACG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	85, 366
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	30, 123, 530, 541
SatI	GCNGC	3 cut(s)	36, 49, 280
Sau3AI	GATC	4 cut(s)	172, 216, 319, 520
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	9 cut(s)	37, 123, 141, 149, 201, 206, 234, 478, 536
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
SsiI	CCGC	4 cut(s)	48, 93, 280, 428
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	219, 294, 316, 414
TauI	GCSGC	2 cut(s)	51, 282
TfiI	GAWTC	4 cut(s)	103, 178, 250, 419
Tru1I	TTAA	4 cut(s)	30, 123, 530, 541
Tru9I	TTAA	4 cut(s)	30, 123, 530, 541
TscAI	CASTG	2 cut(s)	58, 175
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	58, 175
Vha464I	CTTAAG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	505
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.