Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0017539

Physical Location & Seq

Genomic Coordinates Reverse (-)

29234014 .. 29234725

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1215100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGACGATGGCATGTCAGGGTTTTGCATTAAAGCATCGAGTTTTCGCAGTGGTGGTGACGGTGGTAATGGTAATAGTGGAACCAAGTGCGGGCGTTGGAATCCAACTATTGAACAGGTTAAAGTGCTGACTGACCTGTTTAGGTCTGGACTCCGAACGCCGAGCACTGATCAGATTCAGAAAATCTCCTCTCAGCTAAGCTTTTATGGAAAGATCGAGAGCAAGAACGTCTTTTACTGGTTTCAGAATCACAAAGCCAGAGAAAGACAAAAGCGGCGTAAAGTTTCTATTGATGACAAGGATATCATTCGTCGAGATCAGGAGAACAAGCCGTCTCCAAAACAAATAAATCAGGTGTCGGAGCCGGTGAGAGTGATTGAGACCCTTCAACTTTTCCCGATAAACTCTTTAAACGAATCTGAAGGAGAGAAGCTGAGATTTCATGCAAACGAATATTGCAAGGAGGCATCAGCTTTTACTTACACTGTTGGGACAGAAATGGACCTTCCACCTTTGGATCTGCGCTTAAGTTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

180

Amino Acids

20.44

Weight (kDa)

8.97

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	8.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11260
fragaria_vesca	FvH4_7g24100 FvH4_7g24100
malus_domestica	MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica	Prupe.2G247100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369521
rosa_laevigata	RLG00000027122
rosa_multiflora	Rmu_ssc0000484.1_g000027
rosa_roxburghii	Rroxscaffold_4G00287560
rosa_rugosa	Rorug01G0351000
rosa_wichuraiana	Rw1G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 274
AclWI	GGATC	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	526
AgsI	TTSAA	2 cut(s)	113, 389
AluBI	AGCT	4 cut(s)	196, 201, 433, 473
AluI	AGCT	4 cut(s)	196, 201, 433, 473
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	339, 374
AlwI	GGATC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	68, 379
AvaII	GGWCC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	339, 374
BfrI	CTTAAG	1 cut(s)	526
BisI	GCNGC	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	82, 363
BmsI	GCATC	2 cut(s)	44, 476
Bpu1102I	GCTNAGC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	206, 425
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	2 cut(s)	339, 374
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	505
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	169, 213, 316, 517
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	90, 274
BspCNI	CTCAG	2 cut(s)	205, 426
BspLI	GGNNCC	2 cut(s)	82, 363
BspPI	GGATC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	526
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	364
BssMI	GATC	4 cut(s)	169, 213, 316, 517
Bst4CI	ACNGT	2 cut(s)	62, 487
BstAFI	CTTAAG	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	192, 197, 434
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	4 cut(s)	172, 216, 319, 520
BstMAI	GTCTC	2 cut(s)	339, 374
BstMBI	GATC	4 cut(s)	169, 213, 316, 517
BstNSI	RCATGY	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	55, 165, 483
Cac8I	GCNNGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	502
CviAII	CATG	2 cut(s)	13, 443
CviJI	RGCY	7 cut(s)	196, 201, 257, 331, 364, 433, 473
CviKI_1	RGCY	7 cut(s)	196, 201, 257, 331, 364, 433, 473
DdeI	CTNAG	3 cut(s)	192, 197, 434
DpnI	GATC	4 cut(s)	171, 215, 318, 519
DpnII	GATC	4 cut(s)	169, 213, 316, 517
DraI	TTTAAA	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	16, 446
FaiI	YATR	3 cut(s)	14, 207, 444
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	2 cut(s)	12, 442
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	275
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	2 cut(s)	16, 446
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	5 cut(s)	100, 150, 175, 247, 416
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	2 cut(s)	68, 379
Hpy188I	TCNGA	6 cut(s)	155, 174, 180, 246, 361, 421
Hpy188III	TCNNGA	5 cut(s)	147, 217, 314, 320, 397
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	3 cut(s)	395, 416, 515
HpyCH4III	ACNGT	2 cut(s)	62, 487
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	27, 446, 459
HpyF3I	CTNAG	3 cut(s)	192, 197, 434
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	16, 446
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 213, 316, 517
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	9 cut(s)	3, 101, 132, 149, 223, 271, 305, 338, 378
LweI	GCATC	2 cut(s)	44, 476
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	171, 215, 318, 519
MboI	GATC	4 cut(s)	169, 213, 316, 517
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	3 cut(s)	77, 128, 339
MnlI	CCTC	2 cut(s)	199, 457
MseI	TTAA	5 cut(s)	30, 120, 410, 527, 538
MspCI	CTTAAG	1 cut(s)	526
MspI	CCGG	1 cut(s)	365
NdeII	GATC	4 cut(s)	169, 213, 316, 517
NlaIII	CATG	2 cut(s)	16, 446
NlaIV	GGNNCC	2 cut(s)	82, 363
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	16
PfeI	GAWTC	4 cut(s)	100, 175, 247, 416
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	82, 363
PspPI	GGNCC	1 cut(s)	502
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	517
SaqAI	TTAA	5 cut(s)	30, 120, 410, 527, 538
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	4 cut(s)	169, 213, 316, 517
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	44, 476
SinI	GGWCC	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SsiI	CCGC	2 cut(s)	90, 274
SspI	AATATT	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	62, 487
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	38, 216, 313
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	4 cut(s)	100, 175, 247, 416
Tru1I	TTAA	5 cut(s)	30, 120, 410, 527, 538
Tru9I	TTAA	5 cut(s)	30, 120, 410, 527, 538
TscAI	CASTG	3 cut(s)	55, 172, 490
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	3 cut(s)	55, 172, 490
Vha464I	CTTAAG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	502
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.