Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017539

Physical Location & Seq

Genomic Coordinates Reverse (-)

18641450 .. 18642633

Gene Structure 1184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATGAAAGCATGTCAGGGTTTTGTATTAAAAGTATTCGGGGTGGCGGTGGCGGTGGCGGTGGTGGTAATGGTGGTAATAACAAGTGCGGGCGTTGGAATCCTACTACTGAACAGGTCAAAGTTTTGACGGACCTGTTCAGGTCTGGACTTCGAACGCCCAGCACTGATCAGATTCAGAAAATCTCTACTCAGCTAAGCTTTTATGGAAAGATTGAGAGCAAGAATGTATTCTACTGGTTCCAAAATCACAAAGCCAGGGAGAGGCAGAAGCGCCGCAAAGTCTCCATTGATATCGACAAGGAGTTCATTCGTCCAGATCATGAGAAGAATATTACTTCTCCAAATGAAGTGATAAATCAAGTGAGTTCGGAGCCTGCAAGAGTGATTGAGACGCTTCAACTCTTTCCTATAAACTCGTTCGATGAATCAGGAGCAGAGAAGCTGAGATTTTATGCAAATGAGTTTGGTTGCAAAGAGAGTACTAGAGGTTTTACTTACACTGCTGTTGGGGGAGAAATGGATCATCATCCACCTTTGGATCTACGCTTAAGCTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

188

Amino Acids

21.09

Weight (kDa)

8.76

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	2.6e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11260
fragaria_vesca	FvH4_7g24100 FvH4_7g24100
malus_domestica	MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica	Prupe.2G247100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369521
rosa_laevigata	RLG00000027122
rosa_multiflora	Rmu_ssc0000484.1_g000027
rosa_roxburghii	Rroxscaffold_4G00287560
rosa_rugosa	Rorug01G0351000
rosa_wichuraiana	Rw1G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	48, 54, 60, 90, 277
AclWI	GGATC	2 cut(s)	531, 549
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflII	CTTAAG	1 cut(s)	550
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	4 cut(s)	196, 201, 445, 555
AluI	AGCT	4 cut(s)	196, 201, 445, 555
Alw26I	GTCTC	2 cut(s)	289, 386
AlwI	GGATC	2 cut(s)	531, 549
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	259
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	289, 386
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	550
BisI	GCNGC	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	242, 375
BmrFI	CCNGG	1 cut(s)	259
Bpu1102I	GCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	10, 529
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	206, 437
BseNI	ACTGG	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	289, 386
BsmBI	CGTCTC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	169, 319, 523, 541
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	5 cut(s)	48, 54, 60, 90, 277
BspCNI	CTCAG	2 cut(s)	205, 438
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	242, 375
BspPI	GGATC	2 cut(s)	531, 549
BspT104I	TTCGAA	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	169, 319, 523, 541
Bst2UI	CCWGG	1 cut(s)	259
BstAFI	CTTAAG	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	92, 378
BstDEI	CTNAG	3 cut(s)	192, 197, 446
BstF5I	GGATG	2 cut(s)	10, 529
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	4 cut(s)	172, 322, 526, 544
BstMAI	GTCTC	2 cut(s)	289, 386
BstMBI	GATC	4 cut(s)	169, 319, 523, 541
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	10, 529
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	165, 501
Cac8I	GCNNGC	2 cut(s)	92, 378
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	13, 323
CviJI	RGCY	6 cut(s)	196, 201, 257, 376, 445, 555
CviKI_1	RGCY	6 cut(s)	196, 201, 257, 376, 445, 555
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	192, 197, 446
DpnI	GATC	4 cut(s)	171, 321, 525, 543
DpnII	GATC	4 cut(s)	169, 319, 523, 541
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	2 cut(s)	16, 326
FaiI	YATR	5 cut(s)	14, 207, 324, 413, 456
FatI	CATG	2 cut(s)	12, 322
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	17, 516
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	277
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	16, 326
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	2 cut(s)	199, 553
HinfI	GANTC	3 cut(s)	100, 175, 428
Hpy188I	TCNGA	3 cut(s)	174, 180, 373
Hpy188III	TCNNGA	4 cut(s)	147, 317, 323, 432
HpyCH4V	TGCA	3 cut(s)	380, 458, 474
HpyF3I	CTNAG	3 cut(s)	192, 197, 446
Hsp92II	CATG	2 cut(s)	16, 326
HspAI	GCGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 319, 523, 541
LmnI	GCTCC	2 cut(s)	373, 434
MaeI	CTAG	1 cut(s)	486
MalI	GATC	4 cut(s)	171, 321, 525, 543
MboI	GATC	4 cut(s)	169, 319, 523, 541
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	258, 482
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	3 cut(s)	30, 551, 562
MspCI	CTTAAG	1 cut(s)	550
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
NdeII	GATC	4 cut(s)	169, 319, 523, 541
NlaIII	CATG	2 cut(s)	16, 326
NlaIV	GGNNCC	2 cut(s)	242, 375
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	154
PagI	TCATGA	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	100, 175, 428
PkrI	GCNGC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	242, 375
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	30, 551, 562
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	169, 319, 523, 541
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	9 cut(s)	120, 138, 146, 198, 203, 447, 493, 538, 557
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SsiI	CCGC	5 cut(s)	48, 54, 60, 90, 277
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	257
TaqI	TCGA	3 cut(s)	154, 297, 423
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	100, 175, 428
Tru1I	TTAA	3 cut(s)	30, 551, 562
Tru9I	TTAA	3 cut(s)	30, 551, 562
TscAI	CASTG	2 cut(s)	172, 508
TspDTI	ATGAA	4 cut(s)	21, 298, 363, 441
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	172, 508
Vha464I	CTTAAG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.