Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0017539

Physical Location & Seq

Genomic Coordinates Reverse (-)

25703362 .. 25704113

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1148000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGACGAGGGCATGTCAGGATTTTGCATTAAAGCATCGAGTTTTCGCGATGGTGGTAATGGTAATAGTGGAACCAAGTGCGGGCGTTGGAATCCAACTACAGAACAGGTTAAAGTTCTGACTGACCTGTTCAGGTCTGGACTCCGAACGCCGAGCACTGATCAGATTCAGAAAATCTCCTCTCAGCTAAGCTTTTATGGCAAGATCGAGAGCAAGAACGTCTTTTACTGGTTTCAGAATCACAAAGCCAGAGAAAGACAAAAGCGGCGTAAAGTTTCTATTGATGACAAGGATATCATTCGTCGAGATCTGGAGAACATATCGTCTCCAAAACAAATAAATCAGGTTTCGGAGCCGGCAAGAGTGATTGAGACCCTTCAACTTTTCCCTATAAACTCTTTCAACGAATCTGAGGGAGAGAAGCTGAGATTTCACGCAAACGAATATTGCAAGGAGGCATCAGCTTTTACCTGCACTGTTGGGACAGAAATGGACCTTCCACCTTTGGATCTGCGTTTAAGTTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043565 GO:0048364 GO:0048507 GO:0048518 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1902459 GO:1903506 GO:1905392 GO:2000036 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

177

Amino Acids

20.12

Weight (kDa)

8.68

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 87	2.3e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11260
fragaria_vesca	FvH4_7g24100 FvH4_7g24100
malus_domestica	MD01G1148000.v1.1 MD07G1215100.v1.1
prunus_persica	Prupe.2G247100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369521
rosa_laevigata	RLG00000027122
rosa_multiflora	Rmu_ssc0000484.1_g000027
rosa_roxburghii	Rroxscaffold_4G00287560
rosa_rugosa	Rorug01G0351000
rosa_wichuraiana	Rw1G031640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	81, 265
AclWI	GGATC	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	380, 403
AluBI	AGCT	4 cut(s)	187, 192, 424, 464
AluI	AGCT	4 cut(s)	187, 192, 424, 464
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	330, 365
AlwI	GGATC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	158
BccI	CCATC	1 cut(s)	44
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	330, 365
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	73, 354
BmsI	GCATC	2 cut(s)	44, 467
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	197, 402, 416
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	330, 365
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	160, 204, 307, 508
Bsp1720I	GCTNAGC	1 cut(s)	188
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	2 cut(s)	81, 265
BspCNI	CTCAG	3 cut(s)	196, 403, 417
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	73, 354
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	355
BssMI	GATC	4 cut(s)	160, 204, 307, 508
Bst4CI	ACNGT	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	83, 357
BstDEI	CTNAG	4 cut(s)	183, 188, 411, 425
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	4 cut(s)	163, 207, 310, 511
BstMAI	GTCTC	2 cut(s)	330, 365
BstMBI	GATC	4 cut(s)	160, 204, 307, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	307, 508
BstYI	RGATCY	2 cut(s)	307, 508
BtgZI	GCGATG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	156, 474
BtuMI	TCGCGA	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	83, 357
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	493
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	187, 192, 248, 355, 424, 464
CviKI_1	RGCY	6 cut(s)	187, 192, 248, 355, 424, 464
DdeI	CTNAG	4 cut(s)	183, 188, 411, 425
DpnI	GATC	4 cut(s)	162, 206, 309, 510
DpnII	GATC	4 cut(s)	160, 204, 307, 508
Eco31I	GGTCTC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	493
EcoRV	GATATC	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 198, 320, 392
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	332
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	91, 141, 166, 238, 407
HpaII	CCGG	1 cut(s)	356
Hpy188I	TCNGA	7 cut(s)	120, 146, 165, 171, 237, 352, 412
Hpy188III	TCNNGA	6 cut(s)	18, 47, 138, 208, 305, 311
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	386, 506
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	27, 450, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	4 cut(s)	183, 188, 411, 425
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 204, 307, 508
LmnI	GCTCC	1 cut(s)	352
LweI	GCATC	2 cut(s)	44, 467
MaeII	ACGT	1 cut(s)	219
MalI	GATC	4 cut(s)	162, 206, 309, 510
MboI	GATC	4 cut(s)	160, 204, 307, 508
MflI	RGATCY	2 cut(s)	307, 508
MhlI	GDGCHC	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	68, 119
MnlI	CCTC	3 cut(s)	190, 406, 448
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	3 cut(s)	30, 111, 518
MspI	CCGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	198
NaeI	GCCGGC	1 cut(s)	357
NdeII	GATC	4 cut(s)	160, 204, 307, 508
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	73, 354
NmeAIII	GCCGAG	1 cut(s)	177
NruI	TCGCGA	1 cut(s)	48
NspI	RCATGY	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	91, 166, 238, 407
PkrI	GCNGC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	73, 354
PspPI	GGNCC	1 cut(s)	493
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PsuI	RGATCY	2 cut(s)	307, 508
RruI	TCGCGA	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	30, 111, 518
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	4 cut(s)	160, 204, 307, 508
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	158
SfaNI	GCATC	2 cut(s)	44, 467
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	493
SsiI	CCGC	2 cut(s)	81, 265
SspI	AATATT	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	3 cut(s)	38, 207, 304
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	4 cut(s)	91, 166, 238, 407
Tru1I	TTAA	3 cut(s)	30, 111, 518
Tru9I	TTAA	3 cut(s)	30, 111, 518
TscAI	CASTG	2 cut(s)	163, 481
TspRI	CASTG	2 cut(s)	163, 481
VpaK11BI	GGWCC	1 cut(s)	493
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.