Rorug01G0351000

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003135
Physical Location & Seq
Reverse (-)
46841559 .. 46845811
4253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0351000.1

Sequence Viewer

Length: 738 bp
ATGCAATCTTTAAGTGCGGGACTGCGGTTTCTCCATAGGCAAAGCTCAAAGATGGCTCATTTCAGTCCAATCGGAGCAAACCCATTTCGCGGCGGTGCTGGGTTTAGCGGCTCCATAGCTTCCAATGGAGTTGGGTCTCTCTCCAAGTGTTCTTATCATTCATGGGCTGCATTCGCCAAAACGGGCTCTCAAACTGAGACATTGACATGCTCAAGTAGTGCCTTGCTAATTAGGAGTCCTCAACCAGGCTTGCTTCAATGGGCAGCAGTTTCACCACCTTTCCCCAGCAGATGCATAACAACAGTGGGTAATACGGTTGAATCAGCAACTCAAGATTCAACAACTGAGCTTGATGCACCTCCCCGCATCAAATTTAAGAGGCTTGATAAAACTGCCAAGCACATAATGCAGATTCTAGATAAGGAAGCTGTAGGGGAAGTGAGGGGGCAGAGAGAAATACATGACATAAAGCCTGGTTATATCGTGCAACTCAGAGTGGAAGTACCCGACAACAAGCGGCGTGTTTCAGTCTTGAAAGGCATTGTGATAGCAAGACGTAATGCTGGTTTAAACTCTACATTCAGAATCAGGAGGCTAGTTGCTGGAGTCGGGGTTGAATCTCTCTTTCCATTGTATTCGCCTAACATAAAGGAGATAAAGATACTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTCAGGGACAAAATGAATGCTCTCAAGAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

245

Amino Acids

27.0

Weight (kDa)

10.46

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L19 PF01245 149 - 240 6.8e-29 Ribosomal protein L19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 89, 245
AgsI TTSAA 5 cut(s) 257, 320, 339, 535, 617
AjnI CCWGG 2 cut(s) 244, 472
AluBI AGCT 5 cut(s) 45, 119, 349, 428, 694
AluI AGCT 5 cut(s) 45, 119, 349, 428, 694
Alw26I GTCTC 2 cut(s) 141, 191
AoxI GGCC 1 cut(s) 687
ApeKI GCWGC 2 cut(s) 167, 263
ApoI RAATTY 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 264
BanII GRGCYC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 154, 275
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 246, 474
BcoDI GTCTC 2 cut(s) 141, 191
BfaI CTAG 2 cut(s) 416, 596
BfmI CTRYAG 1 cut(s) 429
BisI GCNGC 5 cut(s) 91, 109, 168, 264, 518
BlsI GCNGC 5 cut(s) 92, 110, 169, 265, 519
Bme1390I CCNGG 2 cut(s) 246, 474
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 246, 474
BmsI GCATC 3 cut(s) 281, 343, 375
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 3 cut(s) 196, 315, 710
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 245
Bse1I ACTGG 1 cut(s) 669
BseBI CCWGG 2 cut(s) 246, 474
BseLI CCNNNNNNNGG 2 cut(s) 89, 245
BseMII CTCAG 4 cut(s) 186, 336, 505, 718
BseNI ACTGG 1 cut(s) 669
BseXI GCAGC 2 cut(s) 154, 275
BseYI CCCAGC 2 cut(s) 98, 284
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 689
BslFI GGGAC 2 cut(s) 33, 722
BslI CCNNNNNNNGG 2 cut(s) 89, 245
BsmAI GTCTC 2 cut(s) 141, 191
BsmFI GGGAC 2 cut(s) 33, 722
BsmI GAATGC 2 cut(s) 170, 724
BsnI GGCC 1 cut(s) 689
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 188
BspACI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 4 cut(s) 187, 337, 504, 717
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 246, 474
Bst4CI ACNGT 2 cut(s) 304, 316
BstAPI GCANNNNNTGC 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 195, 345, 491, 704
BstENI CCTNNNNNAGG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 141, 191
BstMWI GCNNNNNNNGC 2 cut(s) 173, 406
BstNI CCWGG 2 cut(s) 246, 474
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 244, 472
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 154, 275
BsuRI GGCC 1 cut(s) 689
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 1 cut(s) 503
CviAII CATG 3 cut(s) 162, 207, 461
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 4 cut(s) 195, 345, 491, 704
DraI TTTAAA 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 244, 472
EcoT22I ATGCAT 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 3 cut(s) 165, 210, 464
FaqI GGGAC 2 cut(s) 33, 722
FatI CATG 3 cut(s) 161, 206, 460
FauI CCCGC 2 cut(s) 10, 371
Fnu4HI GCNGC 5 cut(s) 91, 109, 168, 264, 518
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 5 cut(s) 91, 109, 168, 264, 518
FspBI CTAG 2 cut(s) 416, 596
GluI GCNGC 5 cut(s) 91, 109, 168, 264, 518
GsaI CCCAGC 2 cut(s) 102, 288
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 689
Hin1II CATG 3 cut(s) 165, 210, 464
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 235, 320, 335, 412, 585, 606, 617
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 74, 494, 584
Hpy188III TCNNGA 5 cut(s) 332, 416, 532, 589, 727
HpyCH4III ACNGT 2 cut(s) 304, 316
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 6 cut(s) 4, 170, 294, 356, 409, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 406
HpyF3I CTNAG 4 cut(s) 195, 345, 491, 704
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 3 cut(s) 165, 210, 464
LmnI GCTCC 2 cut(s) 74, 116
Lsp1109I GCAGC 2 cut(s) 154, 275
LweI GCATC 3 cut(s) 281, 343, 375
MaeI CTAG 2 cut(s) 416, 596
MaeII ACGT 1 cut(s) 556
MboII GAAGA 1 cut(s) 685
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 2 cut(s) 228, 371
MlyI GAGTC 2 cut(s) 244, 615
MnlI CCTC 6 cut(s) 249, 369, 372, 435, 585, 678
Mph1103I ATGCAT 1 cut(s) 296
MseI TTAA 3 cut(s) 11, 375, 569
MslI CAYNNNNRTG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 246, 474
MssI GTTTAAAC 1 cut(s) 570
Mva1269I GAATGC 2 cut(s) 170, 724
MvaI CCWGG 2 cut(s) 246, 474
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 173, 406
NlaIII CATG 3 cut(s) 165, 210, 464
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 1 cut(s) 210
PctI GAATGC 2 cut(s) 170, 724
PfeI GAWTC 5 cut(s) 320, 335, 412, 585, 617
PkrI GCNGC 5 cut(s) 92, 110, 169, 265, 519
PleI GAGTC 2 cut(s) 243, 614
PmeI GTTTAAAC 1 cut(s) 570
PpsI GAGTC 2 cut(s) 243, 614
Psp6I CCWGG 2 cut(s) 244, 472
PspFI CCCAGC 2 cut(s) 98, 284
PspGI CCWGG 2 cut(s) 244, 472
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 687
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 205
SaqAI TTAA 3 cut(s) 11, 375, 569
SatI GCNGC 5 cut(s) 91, 109, 168, 264, 518
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 2 cut(s) 244, 615
ScrFI CCNGG 2 cut(s) 246, 474
SduI GDGCHC 1 cut(s) 188
SetI ASST 8 cut(s) 47, 121, 280, 351, 361, 430, 559, 696
SfaNI GCATC 3 cut(s) 281, 343, 375
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 211, 330, 725
SmoI CTYRAG 3 cut(s) 211, 330, 725
Sse9I AATT 2 cut(s) 228, 371
SsiI CCGC 8 cut(s) 17, 25, 90, 93, 108, 364, 517, 682
SspMI CTAG 2 cut(s) 416, 596
StyD4I CCNGG 2 cut(s) 244, 472
TaaI ACNGT 2 cut(s) 304, 316
TaiI ACGT 1 cut(s) 559
TasI AATT 2 cut(s) 228, 371
TauI GCSGC 3 cut(s) 93, 111, 520
TfiI GAWTC 5 cut(s) 320, 335, 412, 585, 617
Tru1I TTAA 3 cut(s) 11, 375, 569
Tru9I TTAA 3 cut(s) 11, 375, 569
TscAI CASTG 1 cut(s) 309
TseI GCWGC 2 cut(s) 167, 263
TspDTI ATGAA 2 cut(s) 150, 731
TspRI CASTG 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 371
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 416, 596
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.