Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

16189212 .. 16192629

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16670.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATGTGGTCAAAACGCAGCAAATCTCCGCGAGGCCGATCGATCCGAAGGTGATAGTTCACCCGCTGGTTCTGCTCAGCATCGTCGACAACTACAACAGGGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGAGTTCTGCTCGGCTCGTCGTACAAGGGCACCGTCGACGTCACCAACAGCTACGCCGTTCCCTTTGAAGAAGATGACAAGGATCCCAGTATCTGGTTTCTTGATCACAACTACCATGAAGCCATGTATTCCATGGCAAAGAGAATAAATGCAAAGGAGCACGTTGTGGGATGGTACAGCACAGGTCCAAAATTGCGAGAAAATGACTTAGACATTCACGGTTTATTTAATGATTATGTTCCAAATCCTGTCTTGGTCATAATTGATGTCCAACCTAAGGAGCTGGGAATACCAACAAAAGCTTACTGTGCCGTTGAAGAGGTTAAAGAGAATGCTACCCAGAAAAGCCAGAAGATTTTCGTTCATGTGCCTTCTGAAATTGCTGCCCATGAAGTTGAGGAAATTGGAGTGGAACACTTGCTTAGAGATGTGAAAGATACAACCATCAGCACTCTTGCAACAGAGGTTACAGGGAAACTCACAGCCTTGAAGGGATTGGAAGCAAGACTTAAGGAGATTCGGGGTTATCTGGACCTTGTTATTGATGGCAAGCTCCCATTAAACCACGAGATTTTGTACCACCTACAGGATGTGTTCAATCTACTTCCAAATCTTAATGTTTCTGATCTCATCAAGGCTTTTTCAGTGAAAACAAATGATATGATGTTGGTTATATATCTTTCTTCCCTCATCCGAAGCGTTATTGCTCTTCACAACTTGATCAACAACAAGATGCACAATAAGGAGCATGAAAGGGCAGAAGACTCGAAACAAGTTGCCGTAACAGCTGCAGCTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

312

Amino Acids

34.89

Weight (kDa)

6.01

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	225
AccI	GTMKAC	2 cut(s)	87, 168
AccII	CGCG	2 cut(s)	32, 126
AciI	CCGC	2 cut(s)	30, 65
AclWI	GGATC	3 cut(s)	38, 209, 222
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	155, 308, 710
AfiI	CCNNNNNNNGG	3 cut(s)	225, 409, 718
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	4 cut(s)	200, 449, 622, 730
AluBI	AGCT	7 cut(s)	183, 415, 434, 685, 920, 926, 933
AluI	AGCT	7 cut(s)	183, 415, 434, 685, 920, 926, 933
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	38, 209, 222
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	4 cut(s)	19, 515, 920, 923
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	317, 664
AsuHPI	GGTGA	3 cut(s)	53, 64, 166
AvaII	GGWCC	2 cut(s)	317, 664
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	31, 502, 907
BccI	CCATC	3 cut(s)	297, 584, 671
BceAI	ACGGC	3 cut(s)	173, 428, 896
BcgI	CGANNNNNNTGC	4 cut(s)	109, 143, 879, 913
BclI	TGATCA	2 cut(s)	235, 852
BfmI	CTRYAG	2 cut(s)	716, 921
BfrI	CTTAAG	1 cut(s)	641
BisI	GCNGC	4 cut(s)	20, 516, 921, 924
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	21, 517, 922, 925
Bme18I	GGWCC	2 cut(s)	317, 664
BmgT120I	GGNCC	2 cut(s)	317, 664
BmiI	GGNNCC	2 cut(s)	163, 216
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	90, 855
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	900
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 409, 718
Bse1I	ACTGG	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	4 cut(s)	10, 308, 727, 822
BseLI	CCNNNNNNNGG	3 cut(s)	225, 409, 718
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	31, 502, 907
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	32, 126
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	225, 409, 718
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	164, 294
Bsp143I	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
Bsp1720I	GCTNAGC	1 cut(s)	77
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	30, 65
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	2 cut(s)	32, 126
BspLI	GGNNCC	2 cut(s)	163, 216
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	3 cut(s)	38, 209, 222
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	698
Bst4CI	ACNGT	3 cut(s)	166, 353, 440
Bst6I	CTCTTC	2 cut(s)	444, 846
BstACI	GRCGYC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	122, 683
BstDEI	CTNAG	4 cut(s)	77, 340, 408, 554
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	10, 308, 727, 822
BstFNI	CGCG	2 cut(s)	32, 126
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	6 cut(s)	42, 46, 217, 238, 760, 855
BstMBI	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 440, 917
BstSFI	CTRYAG	2 cut(s)	716, 921
BstSLI	GKGCMC	1 cut(s)	164
BstUI	CGCG	2 cut(s)	32, 126
BstV1I	GCAGC	3 cut(s)	31, 502, 907
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	37
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	4 cut(s)	10, 308, 727, 822
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	2 cut(s)	122, 683
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	317, 664
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	154, 307, 709
CviAII	CATG	6 cut(s)	248, 256, 265, 497, 521, 881
CviQI	GTAC	3 cut(s)	154, 307, 709
DdeI	CTNAG	4 cut(s)	77, 340, 408, 554
DpnI	GATC	6 cut(s)	41, 45, 216, 237, 759, 854
DpnII	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	444, 846
EarI	CTCTTC	2 cut(s)	444, 846
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	317, 664
Eco81I	CCTNAGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	251, 259, 268, 500, 524, 884
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	6 cut(s)	247, 255, 264, 496, 520, 880
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	2 cut(s)	235, 852
FblI	GTMKAC	2 cut(s)	87, 168
Fnu4HI	GCNGC	4 cut(s)	20, 516, 921, 924
FokI	GGATG	4 cut(s)	17, 315, 734, 809
Fsp4HI	GCNGC	4 cut(s)	20, 516, 921, 924
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	4 cut(s)	20, 516, 921, 924
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	37
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	251, 259, 268, 500, 524, 884
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	2 cut(s)	88, 169
HindII	GTYRAC	2 cut(s)	88, 169
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	2 cut(s)	649, 896
HphI	GGTGA	3 cut(s)	53, 64, 166
Hpy166II	GTNNAC	3 cut(s)	61, 88, 169
Hpy188I	TCNGA	5 cut(s)	48, 134, 508, 757, 827
Hpy188III	TCNNGA	2 cut(s)	233, 662
Hpy8I	GTNNAC	3 cut(s)	61, 88, 169
Hpy99I	CGWCG	6 cut(s)	89, 131, 134, 154, 170, 173
HpyAV	CCTTC	3 cut(s)	43, 513, 616
HpyCH4III	ACNGT	3 cut(s)	166, 353, 440
HpyCH4IV	ACGT	2 cut(s)	171, 294
HpyCH4V	TGCA	4 cut(s)	284, 590, 868, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 440, 917
HpyF3I	CTNAG	4 cut(s)	77, 340, 408, 554
HpySE526I	ACGT	2 cut(s)	171, 294
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	251, 259, 268, 500, 524, 884
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	2 cut(s)	235, 852
Kzo9I	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	4 cut(s)	289, 412, 690, 877
Lsp1109I	GCAGC	3 cut(s)	31, 502, 907
LweI	GCATC	2 cut(s)	90, 855
MaeII	ACGT	2 cut(s)	171, 294
MaeIII	GTNAC	3 cut(s)	172, 598, 913
MalI	GATC	6 cut(s)	41, 45, 216, 237, 759, 854
MboI	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
MboII	GAAGA	7 cut(s)	212, 215, 461, 496, 807, 833, 905
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	164, 294
MluCI	AATT	4 cut(s)	323, 393, 510, 534
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	2 cut(s)	112, 427
MnlI	CCTC	5 cut(s)	27, 445, 523, 589, 830
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	5 cut(s)	360, 456, 642, 692, 747
MspA1I	CMGCKG	3 cut(s)	67, 920, 926
MspCI	CTTAAG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	469
MvnI	CGCG	2 cut(s)	32, 126
MwoI	GCNNNNNNNGC	3 cut(s)	73, 440, 917
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
NlaIII	CATG	6 cut(s)	251, 259, 268, 500, 524, 884
NlaIV	GGNNCC	2 cut(s)	163, 216
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	846
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	649
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	21, 517, 922, 925
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	163, 216
PspPI	GGNCC	2 cut(s)	317, 664
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	214
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	2 cut(s)	920, 926
RsaI	GTAC	3 cut(s)	155, 308, 710
RsaNI	GTAC	3 cut(s)	154, 307, 709
SalI	GTCGAC	2 cut(s)	86, 167
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	5 cut(s)	360, 456, 642, 692, 747
SatI	GCNGC	4 cut(s)	20, 516, 921, 924
Sau3AI	GATC	6 cut(s)	39, 43, 214, 235, 757, 852
Sau96I	GGNCC	2 cut(s)	317, 664
SchI	GAGTC	1 cut(s)	890
SduI	GDGCHC	2 cut(s)	164, 294
SfaNI	GCATC	2 cut(s)	90, 855
SfcI	CTRYAG	2 cut(s)	716, 921
SgrDI	CGTCGACG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	317, 664
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	4 cut(s)	323, 393, 510, 534
SsiI	CCGC	2 cut(s)	30, 65
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	166, 353, 440
TaiI	ACGT	2 cut(s)	174, 297
TaqI	TCGA	4 cut(s)	42, 87, 168, 899
TasI	AATT	4 cut(s)	323, 393, 510, 534
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	5 cut(s)	360, 456, 642, 692, 747
Tru9I	TTAA	5 cut(s)	360, 456, 642, 692, 747
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	4 cut(s)	19, 515, 920, 923
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	264, 485, 537, 897
TspRI	CASTG	1 cut(s)	783
Van91I	CCANNNNNTGG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	641
VpaK11BI	GGWCC	2 cut(s)	317, 664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	87, 168
XmnI	GAANNNNTTC	1 cut(s)	488
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.