Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

18636641 .. 18640671

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATGTGATTAAAACACAGCAAATCTCATTGACGCCGATCGAGAAGGTGATAGTTCACCCTCTCGTTCTCCTCAGCACCGTCGACAACTACAACCGTGTCGCCAAGGACACTCGTAAGCGCGTCGTCGGGGTTCTCCTCGGCTCCTCCTACCGCGGCACCGTTGACGTCACCAACAGCTACGCTGTGCCCTTTGAAGAAGATGACAAGGACCCTAGCATCTGGTTTCTTGATCACAACTACCATGAAGCCATGTATTCCATGTCAAAGAGAATTAATGCAAAGGAGCATGTTGTGGGATGGTACAGCACAGGCCCAAAGTTGCGAGAAAATGACTTGGATGTTCATAATTTGTTTACCGACTATGTTTCGAATCCTGTCTTGGTAATAATTGACGTCCAACCTAAGGAGCTGGGAATACCTACAAAAGCTTACTGTGCTGTTGAAGAGGTTAAAGAGAATGCTACCCAGAAAAGCCAGAAGGTGTTTGTTCATGTGCCCTCTGAAATTGCTGCCCATGAAGTTGAGGAAATTGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACTCTTGCAACAGAGGTAACTGGCAAACTGACAGCTCTGAAGGGATTGGATGCAAGACTCCGAGAGATCCGGGGTTATCTTGACCTCGTTATTGATGAGAAGCTCCCTTTGAACCACGAGATTTTGTACCACCTACAGGACGTGTTCAACCTTCTTCCAAATCTTAATGTTTCAGAGTTAATCAAGGGCTTTGCAGTTAAAACAAATGATATGATGTTGGTCATATATCTGTCCTCCCTCATCCGAAGTGTTATTGCTCTTCACAACCTGATTAACAACAAGATGCAAAACAAGGAGCACGAAAAGGCAGAAGACTCTAAACAAGTTACTGTACCAGCTGCAGCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

310

Amino Acids

34.85

Weight (kDa)

5.75

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	14 - 124	3.9e-34	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	174 - 285	1.4e-38	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	171, 399
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	2 cut(s)	123, 156
AciI	CCGC	2 cut(s)	154, 156
AclWI	GGATC	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	638
AcyI	GRCGYC	3 cut(s)	35, 168, 396
AfaI	GTAC	3 cut(s)	305, 707, 912
AfiI	CCNNNNNNNGG	2 cut(s)	406, 715
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	4 cut(s)	197, 446, 691, 727
AjiI	CACGTC	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	7 cut(s)	180, 412, 431, 614, 682, 917, 927
AluI	AGCT	7 cut(s)	180, 412, 431, 614, 682, 917, 927
Alw21I	GWGCWC	1 cut(s)	879
AlwI	GGATC	1 cut(s)	640
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	512, 917, 920
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	211, 314
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	3 cut(s)	50, 61, 163
AsuII	TTCGAA	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	192, 501
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	879
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	499, 904
BccI	CCATC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	650
BfaI	CTAG	2 cut(s)	216, 928
BfmI	CTRYAG	2 cut(s)	713, 918
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	4 cut(s)	157, 513, 918, 921
BlsI	GCNGC	4 cut(s)	158, 514, 919, 922
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	211, 314
BmiI	GGNNCC	3 cut(s)	145, 160, 213
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	3 cut(s)	228, 619, 852
BpiI	GAAGAC	1 cut(s)	897
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	650
BsaHI	GRCGYC	3 cut(s)	35, 168, 396
BsaJI	CCNNGG	4 cut(s)	105, 139, 154, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 715
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	105, 139, 154, 649
BseGI	GGATG	5 cut(s)	10, 305, 346, 634, 819
BseLI	CCNNNNNNNGG	2 cut(s)	406, 715
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	3 cut(s)	62, 128, 136
BseSI	GKGCMC	2 cut(s)	192, 501
BseXI	GCAGC	2 cut(s)	499, 904
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	2 cut(s)	123, 156
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	406, 715
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	192, 501, 879
Bsp143I	GATC	3 cut(s)	39, 232, 645
BspACI	CCGC	2 cut(s)	154, 156
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	2 cut(s)	123, 156
BspLI	GGNNCC	3 cut(s)	145, 160, 213
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	1 cut(s)	640
BspQI	GCTCTTC	1 cut(s)	843
BspT104I	TTCGAA	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	105, 139, 154, 649
BssMI	GATC	3 cut(s)	39, 232, 645
BssNI	GRCGYC	3 cut(s)	35, 168, 396
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	695
Bst4CI	ACNGT	5 cut(s)	82, 98, 163, 437, 910
Bst6I	CTCTTC	2 cut(s)	441, 843
BstACI	GRCGYC	3 cut(s)	35, 168, 396
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	3 cut(s)	74, 405, 551
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	5 cut(s)	10, 305, 346, 634, 819
BstFNI	CGCG	2 cut(s)	123, 156
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	42, 235, 648
BstMBI	GATC	3 cut(s)	39, 232, 645
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	2 cut(s)	713, 918
BstSLI	GKGCMC	2 cut(s)	192, 501
BstUI	CGCG	2 cut(s)	123, 156
BstV1I	GCAGC	2 cut(s)	499, 904
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	5 cut(s)	10, 305, 346, 634, 819
Cac8I	GCNNGC	1 cut(s)	925
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	211, 314
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	2 cut(s)	43, 112
Csp6I	GTAC	3 cut(s)	304, 706, 911
CviAII	CATG	6 cut(s)	245, 253, 262, 290, 494, 518
CviQI	GTAC	3 cut(s)	304, 706, 911
DdeI	CTNAG	3 cut(s)	74, 405, 551
DpnI	GATC	3 cut(s)	41, 234, 647
DpnII	GATC	3 cut(s)	39, 232, 645
Eam1104I	CTCTTC	2 cut(s)	441, 843
EarI	CTCTTC	2 cut(s)	441, 843
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	638
Eco81I	CCTNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
FatI	CATG	6 cut(s)	244, 252, 261, 289, 493, 517
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	157, 513, 918, 921
FokI	GGATG	5 cut(s)	17, 312, 353, 641, 806
Fsp4HI	GCNGC	4 cut(s)	157, 513, 918, 921
FspBI	CTAG	2 cut(s)	216, 928
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	157, 513, 918, 921
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	2 cut(s)	43, 112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	3 cut(s)	35, 168, 396
Hin1II	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	3 cut(s)	373, 636, 893
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	3 cut(s)	50, 61, 163
Hpy166II	GTNNAC	4 cut(s)	58, 85, 166, 357
Hpy188I	TCNGA	5 cut(s)	505, 618, 641, 754, 824
Hpy188III	TCNNGA	3 cut(s)	43, 230, 659
Hpy8I	GTNNAC	4 cut(s)	58, 85, 166, 357
Hpy99I	CGWCG	3 cut(s)	86, 128, 131
HpyAV	CCTTC	5 cut(s)	40, 475, 556, 613, 740
HpyCH4III	ACNGT	5 cut(s)	82, 98, 163, 437, 910
HpyCH4IV	ACGT	3 cut(s)	168, 396, 720
HpyCH4V	TGCA	6 cut(s)	281, 587, 632, 773, 865, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	3 cut(s)	74, 405, 551
HpySE526I	ACGT	3 cut(s)	168, 396, 720
Hsp92I	GRCGYC	3 cut(s)	35, 168, 396
Hsp92II	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	39, 232, 645
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	5 cut(s)	149, 286, 409, 687, 874
Lsp1109I	GCAGC	2 cut(s)	499, 904
LweI	GCATC	3 cut(s)	228, 619, 852
MaeI	CTAG	2 cut(s)	216, 928
MaeII	ACGT	3 cut(s)	168, 396, 720
MaeIII	GTNAC	3 cut(s)	169, 595, 904
MalI	GATC	3 cut(s)	41, 234, 647
MboI	GATC	3 cut(s)	39, 232, 645
MboII	GAAGA	6 cut(s)	209, 212, 458, 725, 830, 902
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	3 cut(s)	192, 501, 879
MluCI	AATT	5 cut(s)	273, 349, 390, 507, 531
MlyI	GAGTC	2 cut(s)	630, 887
MmeI	TCCRAC	1 cut(s)	424
MseI	TTAA	7 cut(s)	12, 276, 453, 744, 758, 777, 852
MspA1I	CMGCKG	2 cut(s)	156, 917
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	2 cut(s)	123, 156
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	3 cut(s)	39, 232, 645
NlaIII	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
NlaIV	GGNNCC	3 cut(s)	145, 160, 213
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	843
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	158, 514, 919, 922
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	2 cut(s)	630, 887
PpsI	GAGTC	2 cut(s)	630, 887
PpuMI	RGGWCCY	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	145, 160, 213
PspPI	GGNCC	2 cut(s)	211, 314
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	1 cut(s)	645
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	305, 707, 912
RsaNI	GTAC	3 cut(s)	304, 706, 911
SacII	CCGCGG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	7 cut(s)	12, 276, 453, 744, 758, 777, 852
SatI	GCNGC	4 cut(s)	157, 513, 918, 921
Sau3AI	GATC	3 cut(s)	39, 232, 645
Sau96I	GGNCC	2 cut(s)	211, 314
SchI	GAGTC	2 cut(s)	630, 887
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	3 cut(s)	192, 501, 879
SfaNI	GCATC	3 cut(s)	228, 619, 852
SfcI	CTRYAG	2 cut(s)	713, 918
Sfr303I	CCGCGG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	371
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	5 cut(s)	273, 349, 390, 507, 531
SsiI	CCGC	2 cut(s)	154, 156
SspMI	CTAG	2 cut(s)	216, 928
StyD4I	CCNGG	1 cut(s)	648
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	5 cut(s)	82, 98, 163, 437, 910
TaiI	ACGT	3 cut(s)	171, 399, 723
TaqI	TCGA	3 cut(s)	42, 84, 371
TasI	AATT	5 cut(s)	273, 349, 390, 507, 531
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	7 cut(s)	12, 276, 453, 744, 758, 777, 852
Tru9I	TTAA	7 cut(s)	12, 276, 453, 744, 758, 777, 852
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	512, 917, 920
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	261, 335, 482, 534
VpaK11BI	GGWCC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	216, 928
ZraI	GACGTC	2 cut(s)	169, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.