Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Forward (+)

4919696 .. 4923740

Gene Structure 4045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGGACGAAGAAGAATCAGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCCGGTGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTAGTCAACGACGACGTTTTGTACGATGAAGCAGCCTCAGTGGCTTTTCCACTGTATAACAAATCACACATGATTTCGCTGGAAATGCCTGGTGGAATTGGAGATGTTCTAGTTACATCTTTCGGAGAGCTCCGTGGGAATGAGTACCTTGATCCCAGGACTGCTCATGTTGCTGTAGTTGACCATATCAAACAGGTTTGTACAGACGTGAGACCTGCATTGGATGAAGAACTTCCATCCGCATATGTTGAGGAATTCAGGTGTGCTTTGGATGGAGAAATACTTAGATATGTGGGTGAAGCTTATCCAAAAGGAGTCTGCTCAGTGTACTGTGGGAATGGTAAAGATGCAGAGGGCCCAGGATCTGACTTTGAGCTCGTGGTAGTGATTTCAGCTGCTAGACATAGCCCACAAAACTTCTGCAATGGTAGTTGGCGTTCAGTGTGGAGCATTGAGTTCAAAGATGAAGTACAGATGCTGGAATTAAAAGGCAAACTGCAGGTGGGTGCCCACTATTTTGAGGAGGGGAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATTCAACAATTTTTCAGTCCTCTGAAGATTCTGCAATTACCATAGGCAACATTATAAGACAACATGAAGCAGAATACTTGGCATCTCTTGAGGCATCCTATTCAAACTTGCCCGATACCACTTTTAAGGATCTTCGTAGAAAGCTTCCAGTTACTCGCACCCTATTTCCATGGCAGAATACTTTACAGTTTAGCTTGACAAGAGATATCACAAAAGAACTTGGCATTGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

304

Amino Acids

33.95

Weight (kDa)

4.67

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-actin_cap_A	PF01267	18 - 295	6.1e-78	F-actin capping protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
AarI	CACCTGC	1 cut(s)	607
Acc36I	ACCTGC	2 cut(s)	340, 607
AccB1I	GGYRCC	1 cut(s)	623
AciI	CCGC	3 cut(s)	5, 116, 357
AclWI	GGATC	3 cut(s)	263, 487, 816
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	5 cut(s)	140, 263, 319, 446, 588
AgsI	TTSAA	3 cut(s)	577, 684, 783
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	205, 272, 475
AjuI	GAANNNNNNNTTGG	1 cut(s)	888
AluBI	AGCT	7 cut(s)	25, 247, 419, 493, 512, 823, 873
AluI	AGCT	7 cut(s)	25, 247, 419, 493, 512, 823, 873
Alw21I	GWGCWC	2 cut(s)	249, 495
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	263, 487, 816
AlwNI	CAGNNNCTG	2 cut(s)	482, 595
AoxI	GGCC	1 cut(s)	472
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	149, 512
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	472, 473
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	95, 425
BaeGI	GKGCMC	2 cut(s)	476, 628
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	3 cut(s)	249, 476, 495
BauI	CACGAG	1 cut(s)	494
Bbv12I	GWGCWC	2 cut(s)	249, 495
BbvI	GCAGC	2 cut(s)	161, 499
BccI	CCATC	2 cut(s)	361, 383
BciT130I	CCWGG	3 cut(s)	207, 274, 477
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	227, 516
BfmI	CTRYAG	2 cut(s)	291, 614
BfuAI	ACCTGC	2 cut(s)	340, 607
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	2 cut(s)	150, 513
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	2 cut(s)	151, 514
Bme1390I	CCNGG	4 cut(s)	81, 207, 274, 477
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	472, 473
BmiI	GGNNCC	3 cut(s)	62, 474, 625
BmrFI	CCNGG	4 cut(s)	81, 207, 274, 477
BmsI	GCATC	5 cut(s)	454, 582, 649, 770, 782
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	250, 272, 475, 848
Bse1I	ACTGG	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	3 cut(s)	207, 274, 477
BseDI	CCNNGG	4 cut(s)	250, 272, 475, 848
BseGI	GGATG	4 cut(s)	346, 353, 394, 773
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	168, 453
BseNI	ACTGG	1 cut(s)	827
BseRI	GAGGAG	3 cut(s)	56, 66, 653
BseSI	GKGCMC	2 cut(s)	476, 628
BseXI	GCAGC	2 cut(s)	161, 499
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	623
BsiHKAI	GWGCWC	2 cut(s)	249, 495
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	322
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	4 cut(s)	249, 476, 495, 628
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	268, 479, 808
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	3 cut(s)	5, 116, 357
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	167, 452
BspLI	GGNNCC	3 cut(s)	62, 474, 625
BspMAI	CTGCAG	1 cut(s)	618
BspMI	ACCTGC	2 cut(s)	340, 607
BspPI	GGATC	3 cut(s)	263, 487, 816
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	4 cut(s)	250, 272, 475, 848
BssMI	GATC	3 cut(s)	268, 479, 808
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	848
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	207, 274, 477
Bst4CI	ACNGT	3 cut(s)	171, 449, 867
BstAUI	TGTACA	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	26, 154, 401, 439
BstDSI	CCRYGG	2 cut(s)	250, 848
BstF5I	GGATG	4 cut(s)	346, 353, 394, 773
BstKTI	GATC	3 cut(s)	271, 482, 811
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	268, 479, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 202, 287
BstNI	CCWGG	3 cut(s)	207, 274, 477
BstSCI	CCNGG	4 cut(s)	79, 205, 272, 475
BstSFI	CTRYAG	2 cut(s)	291, 614
BstSLI	GKGCMC	2 cut(s)	476, 628
BstV1I	GCAGC	2 cut(s)	161, 499
BstX2I	RGATCY	2 cut(s)	479, 808
BstYI	RGATCY	2 cut(s)	479, 808
BsuRI	GGCC	1 cut(s)	474
BtgI	CCRYGG	2 cut(s)	250, 848
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	4 cut(s)	346, 353, 394, 773
BtsIMutI	CAGTG	4 cut(s)	162, 167, 447, 564
BveI	ACCTGC	2 cut(s)	340, 607
CaiI	CAGNNNCTG	2 cut(s)	482, 595
Cfr13I	GGNCC	2 cut(s)	472, 473
Csp6I	GTAC	5 cut(s)	139, 262, 318, 445, 587
CviAII	CATG	5 cut(s)	187, 284, 668, 743, 849
CviQI	GTAC	5 cut(s)	139, 262, 318, 445, 587
DdeI	CTNAG	4 cut(s)	26, 154, 401, 439
DpnI	GATC	3 cut(s)	270, 481, 810
DpnII	GATC	3 cut(s)	268, 479, 808
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	247, 493
Eco130I	CCWWGG	1 cut(s)	848
Eco24I	GRGCYC	3 cut(s)	249, 476, 495
Eco31I	GGTCTC	1 cut(s)	322
Eco32I	GATATC	1 cut(s)	886
Eco53kI	GAGCTC	2 cut(s)	247, 493
Eco57I	CTGAAG	1 cut(s)	723
EcoICRI	GAGCTC	2 cut(s)	247, 493
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	3 cut(s)	205, 272, 475
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	1 cut(s)	848
EcoT38I	GRGCYC	3 cut(s)	249, 476, 495
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	5 cut(s)	190, 287, 671, 746, 852
FatI	CATG	5 cut(s)	186, 283, 667, 742, 848
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	150, 513
FokI	GGATG	4 cut(s)	340, 353, 401, 760
FriOI	GRGCYC	3 cut(s)	249, 476, 495
Fsp4HI	GCNGC	2 cut(s)	150, 513
FspBI	CTAG	2 cut(s)	227, 516
GluI	GCNGC	2 cut(s)	150, 513
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	5 cut(s)	190, 287, 671, 746, 852
HincII	GTYRAC	2 cut(s)	124, 298
HindII	GTYRAC	2 cut(s)	124, 298
HindIII	AAGCTT	2 cut(s)	417, 821
HinfI	GANTC	4 cut(s)	17, 432, 680, 707
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	95, 425
Hpy166II	GTNNAC	3 cut(s)	124, 298, 445
Hpy188I	TCNGA	4 cut(s)	22, 242, 484, 703
Hpy188III	TCNNGA	1 cut(s)	767
Hpy8I	GTNNAC	3 cut(s)	124, 298, 445
Hpy99I	CGWCG	3 cut(s)	101, 131, 134
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	171, 449, 867
HpyCH4IV	ACGT	2 cut(s)	132, 324
HpyCH4V	TGCA	8 cut(s)	335, 467, 540, 616, 652, 662, 675, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 202, 287
HpyF3I	CTNAG	4 cut(s)	26, 154, 401, 439
HpySE526I	ACGT	2 cut(s)	132, 324
Hsp92II	CATG	5 cut(s)	190, 287, 671, 746, 852
Kzo9I	GATC	3 cut(s)	268, 479, 808
LmnI	GCTCC	2 cut(s)	252, 564
Lsp1109I	GCAGC	2 cut(s)	161, 499
LweI	GCATC	5 cut(s)	454, 582, 649, 770, 782
MaeI	CTAG	2 cut(s)	227, 516
MaeII	ACGT	2 cut(s)	132, 324
MaeIII	GTNAC	2 cut(s)	229, 829
MalI	GATC	3 cut(s)	270, 481, 810
MboI	GATC	3 cut(s)	268, 479, 808
MboII	GAAGA	7 cut(s)	23, 26, 52, 116, 356, 716, 803
MflI	RGATCY	2 cut(s)	479, 808
MhlI	GDGCHC	4 cut(s)	249, 476, 495, 628
MluCI	AATT	6 cut(s)	92, 213, 371, 599, 687, 714
MlyI	GAGTC	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	602, 804
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	4 cut(s)	81, 207, 274, 477
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	3 cut(s)	207, 274, 477
MwoI	GCNNNNNNNGC	3 cut(s)	158, 202, 287
NciI	CCSGG	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	848
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	268, 479, 808
NlaIII	CATG	5 cut(s)	190, 287, 671, 746, 852
NlaIV	GGNNCC	3 cut(s)	62, 474, 625
PaqCI	CACCTGC	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	17, 680, 707
PkrI	GCNGC	2 cut(s)	151, 514
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	734
Psp124BI	GAGCTC	2 cut(s)	249, 495
Psp6I	CCWGG	3 cut(s)	205, 272, 475
PspGI	CCWGG	3 cut(s)	205, 272, 475
PspN4I	GGNNCC	3 cut(s)	62, 474, 625
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	472, 473
PsrI	GAACNNNNNNTAC	2 cut(s)	538, 570
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	2 cut(s)	482, 595
PsuI	RGATCY	2 cut(s)	479, 808
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	5 cut(s)	140, 263, 319, 446, 588
RsaNI	GTAC	5 cut(s)	139, 262, 318, 445, 587
SacI	GAGCTC	2 cut(s)	249, 495
SaqAI	TTAA	2 cut(s)	602, 804
SatI	GCNGC	2 cut(s)	150, 513
Sau3AI	GATC	3 cut(s)	268, 479, 808
Sau96I	GGNCC	2 cut(s)	472, 473
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	4 cut(s)	81, 207, 274, 477
SduI	GDGCHC	4 cut(s)	249, 476, 495, 628
SfaNI	GCATC	5 cut(s)	454, 582, 649, 770, 782
SfcI	CTRYAG	2 cut(s)	291, 614
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	92, 213, 371, 599, 687, 714
SsiI	CCGC	3 cut(s)	5, 116, 357
SspMI	CTAG	2 cut(s)	227, 516
SstI	GAGCTC	2 cut(s)	249, 495
StyD4I	CCNGG	4 cut(s)	79, 205, 272, 475
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	3 cut(s)	171, 449, 867
TaiI	ACGT	2 cut(s)	135, 327
TasI	AATT	6 cut(s)	92, 213, 371, 599, 687, 714
TatI	WGTACW	3 cut(s)	317, 444, 586
TfiI	GAWTC	3 cut(s)	17, 680, 707
Tru1I	TTAA	2 cut(s)	602, 804
Tru9I	TTAA	2 cut(s)	602, 804
TscAI	CASTG	4 cut(s)	162, 174, 447, 564
TseI	GCWGC	2 cut(s)	149, 512
TspDTI	ATGAA	5 cut(s)	159, 357, 597, 684, 759
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	4 cut(s)	162, 174, 447, 564
XapI	RAATTY	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	227, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.