Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

25763703 .. 25767005

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGTTATCAAGACGCAGCAAGTATCGGCGAGGCTCATCGAGAAGGTGATAGTTCACCCACTTGTTCTGCTCAGCATCGTCGACAACTACAACCGAGTCGCCAAGGACACTCGCAAGCGAGTCGTCGGCGTTCTACTCGGAAGCACTTACAAAGGCGTCGTCGACGTCTCCAACAGCTACGCAGTGCCCTTTGAAGAAGATGATAGAGACCCTAGTATTTGGTTTCTTGACCACAACTACCATGAAGCGATGTTCTCTATGTTCAAGAGGATCAATGCCAAGGAGCACGTCGTAGGTTGGTATAGCACTGGGCCGAAACTACGGGAGAATGATCTGGATATTCACAGTTTATTCCACAACTATGTACCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAGGAGCTGGGAATACCCACCAAAGCCTACTATGATGTCGAAGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGATTTTTGTCCACGTGCCCTCTGAAATTGCGGCTCATGAGGTTGAGGAAATTGGAGTGGAACACTTACTAAGGGATGTGAAGGATACAACCATCAGCACCCTTGCAAATGAGGTTACTGGAAAACTTACCGCTCTAAAGGGTTTGGATGCACGGTTACGAGAAATACGCAGTTACCTAGATCTTGTCATTGATGAGAAGCTTCCACTAAATCATGAGATACTTTACCATTTGCAGGACGTATTCAATCTACTTCCAAATCTCAATGTGGCAGAGTTGGTCAAGGGGTTTTCAGTAAAAACAAATGACATGATGTTGGTTATATATCTTTCATCTCTCATCCGAAGCGTCATTGCCCTCCACAACTTGATCAATAACAAGATGCTAAACAAAGAACACGAGAAAGCTGAGGATGCAAAGCCAGCAACGGCCCCATCTGTTGCTGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

311

Amino Acids

35.08

Weight (kDa)

5.91

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	614
AccI	GTMKAC	2 cut(s)	84, 165
AciI	CCGC	2 cut(s)	512, 612
AclWI	GGATC	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	496
AcyI	GRCGYC	2 cut(s)	159, 168
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	406, 715
AgsI	TTSAA	3 cut(s)	197, 268, 727
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	180, 412, 682, 887, 930
AluI	AGCT	5 cut(s)	180, 412, 682, 887, 930
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	175, 204
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	314, 909
ApeKI	GCWGC	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	2 cut(s)	314, 910
AsuHPI	GGTGA	2 cut(s)	50, 61
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	192, 501
BauI	CACGAG	1 cut(s)	878
BbrPI	CACGTG	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	2 cut(s)	581, 922
BceAI	ACGGC	1 cut(s)	924
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	849
BcoDI	GTCTC	2 cut(s)	175, 204
BfaI	CTAG	2 cut(s)	216, 659
BfuI	GTATCC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	20, 513
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	21, 514
Bme1390I	CCNGG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	314, 910
BmiI	GGNNCC	1 cut(s)	912
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	87, 619, 852, 883
BmuI	ACTGGG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu1102I	GCTNAGC	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	496
BsaHI	GRCGYC	2 cut(s)	159, 168
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	105, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 715
Bse1I	ACTGG	3 cut(s)	316, 377, 604
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	831
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	105, 282
BseGI	GGATG	4 cut(s)	562, 634, 819, 898
BseLI	CCNNNNNNNGG	2 cut(s)	406, 715
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	3 cut(s)	88, 482, 879
BseNI	ACTGG	3 cut(s)	316, 377, 604
BseSI	GKGCMC	2 cut(s)	192, 501
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	2 cut(s)	316, 911
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	406, 715
BsmAI	GTCTC	2 cut(s)	175, 204
BsmBI	CGTCTC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	316, 911
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	3 cut(s)	192, 291, 501
Bsp143I	GATC	4 cut(s)	273, 334, 661, 849
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	512, 612
BspANI	GGCC	2 cut(s)	316, 911
BspCNI	CTCAG	3 cut(s)	87, 481, 880
BspHI	TCATGA	2 cut(s)	517, 694
BspLI	GGNNCC	1 cut(s)	912
BspPI	GGATC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	3 cut(s)	316, 377, 604
BssECI	CCNNGG	2 cut(s)	105, 282
BssMI	GATC	4 cut(s)	273, 334, 661, 849
BssNI	GRCGYC	2 cut(s)	159, 168
BssSI	CACGAG	1 cut(s)	878
BssT1I	CCWWGG	2 cut(s)	105, 282
Bst2BI	CACGAG	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	350, 636
BstACI	GRCGYC	2 cut(s)	159, 168
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	119, 903
BstDEI	CTNAG	5 cut(s)	74, 405, 468, 551, 888
BstF5I	GGATG	4 cut(s)	562, 634, 819, 898
BstKTI	GATC	4 cut(s)	276, 337, 664, 852
BstMAI	GTCTC	2 cut(s)	175, 204
BstMBI	GATC	4 cut(s)	273, 334, 661, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 893, 902
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSLI	GKGCMC	2 cut(s)	192, 501
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	316, 911
BtgZI	GCGATG	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	562, 634, 819, 898
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 309
Cac8I	GCNNGC	2 cut(s)	119, 903
CciI	TCATGA	2 cut(s)	517, 694
Cfr13I	GGNCC	2 cut(s)	314, 910
CseI	GACGC	3 cut(s)	25, 148, 817
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	4 cut(s)	245, 518, 695, 790
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	5 cut(s)	74, 405, 468, 551, 888
DpnI	GATC	4 cut(s)	275, 336, 663, 851
DpnII	GATC	4 cut(s)	273, 334, 661, 849
Eco130I	CCWWGG	2 cut(s)	105, 282
Eco31I	GGTCTC	1 cut(s)	204
Eco72I	CACGTG	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	105, 282
ErhI	CCWWGG	2 cut(s)	105, 282
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	4 cut(s)	248, 521, 698, 793
FatI	CATG	4 cut(s)	244, 517, 694, 789
FbaI	TGATCA	1 cut(s)	849
FblI	GTMKAC	2 cut(s)	84, 165
Fnu4HI	GCNGC	2 cut(s)	20, 513
FokI	GGATG	4 cut(s)	569, 641, 806, 905
Fsp4HI	GCNGC	2 cut(s)	20, 513
FspBI	CTAG	2 cut(s)	216, 659
GluI	GCNGC	2 cut(s)	20, 513
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	316, 911
HgaI	GACGC	3 cut(s)	25, 148, 817
Hin1I	GRCGYC	2 cut(s)	159, 168
Hin1II	CATG	4 cut(s)	248, 521, 698, 793
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	2 cut(s)	99, 123
HphI	GGTGA	2 cut(s)	50, 61
Hpy166II	GTNNAC	4 cut(s)	58, 85, 166, 493
Hpy188I	TCNGA	4 cut(s)	143, 471, 505, 824
Hpy188III	TCNNGA	7 cut(s)	13, 43, 230, 268, 338, 518, 695
Hpy8I	GTNNAC	4 cut(s)	58, 85, 166, 493
Hpy99I	CGWCG	6 cut(s)	86, 131, 164, 167, 170, 296
HpyAV	CCTTC	2 cut(s)	40, 556
HpyCH4III	ACNGT	2 cut(s)	350, 636
HpyCH4IV	ACGT	5 cut(s)	6, 168, 291, 495, 720
HpyCH4V	TGCA	5 cut(s)	464, 587, 632, 715, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 893, 902
HpyF3I	CTNAG	5 cut(s)	74, 405, 468, 551, 888
HpySE526I	ACGT	5 cut(s)	6, 168, 291, 495, 720
Hsp92I	GRCGYC	2 cut(s)	159, 168
Hsp92II	CATG	4 cut(s)	248, 521, 698, 793
Ksp22I	TGATCA	1 cut(s)	849
Kzo9I	GATC	4 cut(s)	273, 334, 661, 849
LmnI	GCTCC	2 cut(s)	286, 409
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	4 cut(s)	87, 619, 852, 883
MaeI	CTAG	2 cut(s)	216, 659
MaeII	ACGT	5 cut(s)	6, 168, 291, 495, 720
MaeIII	GTNAC	3 cut(s)	595, 636, 653
MalI	GATC	4 cut(s)	275, 336, 663, 851
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	4 cut(s)	273, 334, 661, 849
MboII	GAAGA	4 cut(s)	209, 212, 458, 493
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	3 cut(s)	192, 291, 501
MluCI	AATT	2 cut(s)	507, 531
MlyI	GAGTC	2 cut(s)	108, 132
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	8 cut(s)	27, 264, 511, 514, 520, 586, 848, 883
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	409, 893, 902
NdeII	GATC	4 cut(s)	273, 334, 661, 849
NlaIII	CATG	4 cut(s)	248, 521, 698, 793
NlaIV	GGNNCC	1 cut(s)	912
PagI	TCATGA	2 cut(s)	517, 694
PctI	GAATGC	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	21, 514
PleI	GAGTC	2 cut(s)	107, 131
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
PpsI	GAGTC	2 cut(s)	107, 131
Ppu21I	YACGTR	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	314, 910
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	2 cut(s)	83, 164
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	20, 513
Sau3AI	GATC	4 cut(s)	273, 334, 661, 849
Sau96I	GGNCC	2 cut(s)	314, 910
SchI	GAGTC	2 cut(s)	108, 132
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	3 cut(s)	192, 291, 501
SfaNI	GCATC	4 cut(s)	87, 619, 852, 883
SgrDI	CGTCGACG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	507, 531
SsiI	CCGC	2 cut(s)	512, 612
SspMI	CTAG	2 cut(s)	216, 659
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	105, 282
TaaI	ACNGT	2 cut(s)	350, 636
TaiI	ACGT	5 cut(s)	9, 171, 294, 498, 723
TaqI	TCGA	4 cut(s)	42, 84, 165, 444
TasI	AATT	2 cut(s)	507, 531
TauI	GCSGC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	192, 316
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	261, 801
TspRI	CASTG	2 cut(s)	192, 316
XmiI	GTMKAC	2 cut(s)	84, 165
XspI	CTAG	2 cut(s)	216, 659
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.