Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

24285535 .. 24289047

Gene Structure 3513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1161700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGTCATCAAAACGCAACAAGTATCGGCGAGACTGATCGAGAAGGTGATAGTCCACCCGCTCGTTTTGCTCAGCATCGTCGACAACTACAACCGAGTCGCTAAGGACACTCGCAAGCGAGTCGTCGGCGTTCTGCTCGGAAGCACCTACAAAGGCGTCGTCGACGTCTCCAATAGCTACGCAGTGCCCTTCGAAGAAGATGACAAAGACCCTAGCATTTGGTTTCTTGACCACAACTACCATGAAGCAATGTTCTCCATGTTCAAGAGGATCAATGCCAAGGAACACGTTGTAGGTTGGTATAGCACTGGGCCAAAACTCAAGGAGAATGATCTGGATATTCACAGTTTATTCCACAACTATGTCCCAAACCCAGTGCTCGTCATTATTGATGTCCAGCCTAAGGAGTTGGGAATACCCACGAAAGCCTACTATGACGTCGAAGAAGTTAAAGAGAATGCAACTCAAAAAAGCCAGAAGATTTTTGTTCATGTGCCCTCTGAAATTGCTGCTCACGAGGTTGAGGAAATCGGAGTGGAGCACTTACTAAGAGATGTGAAGGATACAACCATCAGTACACTTGCAAATGAGGTTACTGGAAAACTGACTGCTCTAAAGGGTTTGGATGCACGGTTACGAGAAATACGCAGTTATCTAGATCTTGTCATTGATGAGAAGCTTCCACTAAATCATGAGATACTTTACCATTTGCAGGACGTGTTCAATCTACTTCCAAATCTCAATGTAGCAGATTTAGTCAAGGGATTTTCAGTAAAAACAAATGACATGATGTTGGTTATTTATCTTTCTTCTCTCATCCGAAGCGTCATCGCCCTCCACAACTTGATCAACAACAAGGTGCTAAACAAAGAACATGAGAAAGCTGAGGATGCAAAGCCAGCAACTGCCTCGTCTGTCGCTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

311

Amino Acids

34.99

Weight (kDa)

5.91

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	15 - 125	5.9e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	174 - 285	4.3e-39	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	9, 171, 444
AccBSI	CCGCTC	1 cut(s)	64
AccI	GTMKAC	2 cut(s)	84, 165
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	281
AcyI	GRCGYC	4 cut(s)	6, 159, 168, 441
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	406, 715
AflIII	ACRYGT	2 cut(s)	289, 720
AgsI	TTSAA	2 cut(s)	268, 727
AjiI	CACGTC	1 cut(s)	721
AluBI	AGCT	3 cut(s)	180, 682, 887
AluI	AGCT	3 cut(s)	180, 682, 887
Alw21I	GWGCWC	2 cut(s)	384, 546
Alw26I	GTCTC	2 cut(s)	28, 175
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	512
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	192, 501
BauI	CACGAG	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	384, 546
BbvCI	CCTCAGC	1 cut(s)	888
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	581
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 894, 928
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	849
BcoDI	GTCTC	2 cut(s)	28, 175
BfaI	CTAG	2 cut(s)	216, 659
BfuI	GTATCC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	1 cut(s)	513
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	314
BmrI	ACTGGG	2 cut(s)	321, 371
BmsI	GCATC	3 cut(s)	87, 619, 883
BmuI	ACTGGG	2 cut(s)	321, 371
Bpu10I	CCTNAGC	2 cut(s)	105, 888
Bpu1102I	GCTNAGC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	308
BsaHI	GRCGYC	4 cut(s)	6, 159, 168, 441
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 715
Bse1I	ACTGG	3 cut(s)	316, 377, 604
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	634, 819, 898
BseLI	CCNNNNNNNGG	2 cut(s)	406, 715
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	88, 879
BseNI	ACTGG	3 cut(s)	316, 377, 604
BseSI	GKGCMC	2 cut(s)	192, 501
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	384, 546
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	406, 715
BsmAI	GTCTC	2 cut(s)	28, 175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	316
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	4 cut(s)	192, 384, 501, 546
Bsp143I	GATC	5 cut(s)	39, 273, 334, 661, 849
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	87, 880
BspHI	TCATGA	1 cut(s)	694
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	3 cut(s)	316, 377, 604
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	39, 273, 334, 661, 849
BssNI	GRCGYC	4 cut(s)	6, 159, 168, 441
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	518
Bst4CI	ACNGT	2 cut(s)	350, 636
BstACI	GRCGYC	4 cut(s)	6, 159, 168, 441
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	119, 903
BstDEI	CTNAG	5 cut(s)	74, 105, 405, 551, 888
BstF5I	GGATG	3 cut(s)	634, 819, 898
BstKTI	GATC	5 cut(s)	42, 276, 337, 664, 852
BstMAI	GTCTC	2 cut(s)	28, 175
BstMBI	GATC	5 cut(s)	39, 273, 334, 661, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 893, 902
BstSLI	GKGCMC	2 cut(s)	192, 501
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	817
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	3 cut(s)	634, 819, 898
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	3 cut(s)	192, 309, 384
Cac8I	GCNNGC	2 cut(s)	119, 903
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	2 cut(s)	148, 817
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	6 cut(s)	245, 262, 494, 695, 790, 878
CviJI	RGCY	8 cut(s)	180, 316, 403, 431, 477, 682, 887, 901
CviKI_1	RGCY	8 cut(s)	180, 316, 403, 431, 477, 682, 887, 901
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	5 cut(s)	74, 105, 405, 551, 888
DpnI	GATC	5 cut(s)	41, 275, 336, 663, 851
DpnII	GATC	5 cut(s)	39, 273, 334, 661, 849
Eco130I	CCWWGG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	6 cut(s)	248, 265, 497, 698, 793, 881
FaiI	YATR	9 cut(s)	246, 263, 306, 366, 438, 495, 696, 791, 879
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	6 cut(s)	244, 261, 493, 694, 789, 877
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	849
FblI	GTMKAC	2 cut(s)	84, 165
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	3 cut(s)	641, 806, 905
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	2 cut(s)	216, 659
GluI	GCNGC	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	2 cut(s)	148, 817
Hin1I	GRCGYC	4 cut(s)	6, 159, 168, 441
Hin1II	CATG	6 cut(s)	248, 265, 497, 698, 793, 881
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	2 cut(s)	99, 123
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	4 cut(s)	58, 85, 166, 581
Hpy188I	TCNGA	4 cut(s)	143, 505, 536, 824
Hpy188III	TCNNGA	7 cut(s)	43, 230, 268, 338, 518, 659, 695
Hpy8I	GTNNAC	4 cut(s)	58, 85, 166, 581
Hpy99I	CGWCG	6 cut(s)	86, 131, 164, 167, 170, 446
HpyAV	CCTTC	3 cut(s)	40, 202, 556
HpyCH4III	ACNGT	2 cut(s)	350, 636
HpyCH4IV	ACGT	5 cut(s)	6, 168, 291, 441, 720
HpyCH4V	TGCA	5 cut(s)	464, 587, 632, 715, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 893, 902
HpyF3I	CTNAG	5 cut(s)	74, 105, 405, 551, 888
HpySE526I	ACGT	5 cut(s)	6, 168, 291, 441, 720
Hsp92I	GRCGYC	4 cut(s)	6, 159, 168, 441
Hsp92II	CATG	6 cut(s)	248, 265, 497, 698, 793, 881
Ksp22I	TGATCA	1 cut(s)	849
Kzo9I	GATC	5 cut(s)	39, 273, 334, 661, 849
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	9 cut(s)	297, 323, 390, 413, 491, 585, 701, 909, 915
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	3 cut(s)	87, 619, 883
MaeI	CTAG	2 cut(s)	216, 659
MaeII	ACGT	5 cut(s)	6, 168, 291, 441, 720
MaeIII	GTNAC	2 cut(s)	595, 636
MalI	GATC	5 cut(s)	41, 275, 336, 663, 851
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	5 cut(s)	39, 273, 334, 661, 849
MboII	GAAGA	5 cut(s)	209, 212, 458, 493, 804
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	4 cut(s)	192, 384, 501, 546
MluCI	AATT	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	108, 132
MnlI	CCTC	8 cut(s)	264, 511, 514, 520, 586, 848, 883, 922
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	3 cut(s)	70, 893, 902
NdeII	GATC	5 cut(s)	39, 273, 334, 661, 849
NlaIII	CATG	6 cut(s)	248, 265, 497, 698, 793, 881
NspV	TTCGAA	1 cut(s)	195
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	2 cut(s)	107, 131
PpsI	GAGTC	2 cut(s)	107, 131
PspPI	GGNCC	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	2 cut(s)	83, 164
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	5 cut(s)	39, 273, 334, 661, 849
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	108, 132
SduI	GDGCHC	4 cut(s)	192, 384, 501, 546
SfaNI	GCATC	3 cut(s)	87, 619, 883
SfuI	TTCGAA	1 cut(s)	195
SgrDI	CGTCGACG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	216, 659
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	350, 636
TaiI	ACGT	5 cut(s)	9, 171, 294, 444, 723
TaqI	TCGA	5 cut(s)	42, 84, 165, 195, 444
TasI	AATT	1 cut(s)	507
TatI	WGTACW	1 cut(s)	578
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	192, 316, 384
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	261, 482
TspRI	CASTG	3 cut(s)	192, 316, 384
XbaI	TCTAGA	1 cut(s)	658
XmiI	GTMKAC	2 cut(s)	84, 165
XspI	CTAG	2 cut(s)	216, 659
ZraI	GACGTC	3 cut(s)	7, 169, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.