Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Forward (+)

3528801 .. 3531724

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACAATCGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCCAAGGACACGAGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCTCTCGTGGTACTGTTGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGAAAGAGAATGCTACCCAGAAAAGCCAACAGGTTTTTGTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACCTTGGCAACTGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACCATGAAATCTTATACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCTTTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAAGTGTAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTTGACATACCCTTAATCACTGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

310

Amino Acids

35.08

Weight (kDa)

5.78

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	13 - 125	7.2e-38	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	171 - 282	1.7e-39	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AatII	GACGTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	648
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	1 cut(s)	640
AcuI	CTGAAG	2 cut(s)	638, 698
AcvI	CACGTG	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	160, 305, 492, 580
AfiI	CCNNNNNNNGG	1 cut(s)	715
AflIII	ACRYGT	2 cut(s)	261, 493
AgsI	TTSAA	5 cut(s)	268, 358, 727, 745, 868
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	3 cut(s)	150, 180, 515
AluI	AGCT	3 cut(s)	150, 180, 515
AlwI	GGATC	1 cut(s)	640
Aor13HI	TCCGGA	1 cut(s)	648
ApeKI	GCWGC	1 cut(s)	512
AseI	ATTAAT	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	50, 163, 463
AvaII	GGWCC	1 cut(s)	314
BauI	CACGAG	3 cut(s)	112, 153, 245
BbrPI	CACGTG	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	581, 717
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BclI	TGATCA	2 cut(s)	232, 849
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	619, 783
Bpu10I	CCTNAGC	2 cut(s)	282, 551
BsaAI	YACGTR	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	105, 582
BsaWI	WCCGGW	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	105, 582
BseGI	GGATG	5 cut(s)	10, 208, 346, 562, 634
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	565, 582, 915
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	212, 461
BseXI	GCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	649
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmI	GAATGC	1 cut(s)	466
Bsp13I	TCCGGA	1 cut(s)	648
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	51, 232, 645, 849
BspACI	CCGC	1 cut(s)	440
BspCNI	CTCAG	3 cut(s)	564, 583, 916
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	517
BspPI	GGATC	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	105, 582
BssMI	GATC	4 cut(s)	51, 232, 645, 849
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	3 cut(s)	112, 153, 245
BssT1I	CCWWGG	2 cut(s)	105, 582
Bst2BI	CACGAG	3 cut(s)	112, 153, 245
Bst4CI	ACNGT	2 cut(s)	163, 845
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	490
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	5 cut(s)	74, 282, 551, 591, 924
BstF5I	GGATG	5 cut(s)	10, 208, 346, 562, 634
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	54, 235, 648, 852
BstMBI	GATC	4 cut(s)	51, 232, 645, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 437
BstNSI	RCATGY	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BtsCI	GGATG	5 cut(s)	10, 208, 346, 562, 634
BtsI	GCAGTG	2 cut(s)	192, 597
BtsIMutI	CAGTG	4 cut(s)	192, 384, 597, 921
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	2 cut(s)	25, 112
Csp6I	GTAC	4 cut(s)	159, 304, 491, 579
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	5 cut(s)	262, 518, 695, 790, 878
CviJI	RGCY	8 cut(s)	104, 150, 180, 363, 477, 515, 767, 901
CviKI_1	RGCY	8 cut(s)	104, 150, 180, 363, 477, 515, 767, 901
CviQI	GTAC	4 cut(s)	159, 304, 491, 579
DdeI	CTNAG	5 cut(s)	74, 282, 551, 591, 924
DpnI	GATC	4 cut(s)	53, 234, 647, 851
DpnII	GATC	4 cut(s)	51, 232, 645, 849
Eco130I	CCWWGG	2 cut(s)	105, 582
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	638, 698
Eco72I	CACGTG	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	105, 582
ErhI	CCWWGG	2 cut(s)	105, 582
FaeI	CATG	5 cut(s)	265, 521, 698, 793, 881
FatI	CATG	5 cut(s)	261, 517, 694, 789, 877
FauNDI	CATATG	1 cut(s)	221
FbaI	TGATCA	2 cut(s)	232, 849
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	5 cut(s)	17, 215, 353, 569, 641
Fsp4HI	GCNGC	1 cut(s)	513
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	2 cut(s)	25, 112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	265, 521, 698, 793, 881
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	4 cut(s)	85, 166, 751, 907
HindII	GTYRAC	4 cut(s)	85, 166, 751, 907
HinfI	GANTC	3 cut(s)	248, 417, 893
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	3 cut(s)	50, 163, 463
Hpy166II	GTNNAC	7 cut(s)	58, 85, 166, 346, 493, 751, 907
Hpy188I	TCNGA	3 cut(s)	143, 618, 824
Hpy188III	TCNNGA	8 cut(s)	43, 230, 268, 326, 518, 641, 649, 716
Hpy8I	GTNNAC	7 cut(s)	58, 85, 166, 346, 493, 751, 907
Hpy99I	CGWCG	3 cut(s)	86, 128, 131
HpyAV	CCTTC	2 cut(s)	613, 668
HpyCH4III	ACNGT	2 cut(s)	163, 845
HpyCH4IV	ACGT	5 cut(s)	168, 366, 495, 720, 747
HpyCH4V	TGCA	3 cut(s)	512, 632, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 437
HpyF3I	CTNAG	5 cut(s)	74, 282, 551, 591, 924
HpySE526I	ACGT	5 cut(s)	168, 366, 495, 720, 747
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	265, 521, 698, 793, 881
HspAI	GCGC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	648
Ksp22I	TGATCA	2 cut(s)	232, 849
Kzo9I	GATC	4 cut(s)	51, 232, 645, 849
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	8 cut(s)	297, 390, 467, 482, 538, 662, 701, 915
Lsp1109I	GCAGC	1 cut(s)	524
LweI	GCATC	2 cut(s)	619, 783
MaeII	ACGT	5 cut(s)	168, 366, 495, 720, 747
MaeIII	GTNAC	2 cut(s)	169, 595
MalI	GATC	4 cut(s)	53, 234, 647, 851
MboI	GATC	4 cut(s)	51, 232, 645, 849
MboII	GAAGA	2 cut(s)	704, 804
MflI	RGATCY	1 cut(s)	645
MluCI	AATT	3 cut(s)	273, 507, 531
MlyI	GAGTC	2 cut(s)	257, 887
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	8 cut(s)	190, 193, 439, 442, 520, 586, 848, 883
MroI	TCCGGA	1 cut(s)	648
MseI	TTAA	5 cut(s)	276, 689, 762, 917, 931
MspI	CCGG	1 cut(s)	649
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	129, 437
NdeI	CATATG	1 cut(s)	221
NdeII	GATC	4 cut(s)	51, 232, 645, 849
NlaIII	CATG	5 cut(s)	265, 521, 698, 793, 881
NmuCI	GTSAC	2 cut(s)	169, 595
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	1 cut(s)	517
PciI	ACATGT	1 cut(s)	261
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	2 cut(s)	256, 887
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
PpsI	GAGTC	2 cut(s)	256, 887
Ppu21I	YACGTR	1 cut(s)	496
PpuMI	RGGWCCY	1 cut(s)	314
PscI	ACATGT	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	4 cut(s)	160, 305, 492, 580
RsaNI	GTAC	4 cut(s)	159, 304, 491, 579
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	276, 689, 762, 917, 931
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	4 cut(s)	51, 232, 645, 849
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	257, 887
SfaNI	GCATC	2 cut(s)	619, 783
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	3 cut(s)	273, 507, 531
SsiI	CCGC	1 cut(s)	440
StyI	CCWWGG	2 cut(s)	105, 582
TaaI	ACNGT	2 cut(s)	163, 845
TaiI	ACGT	5 cut(s)	171, 369, 498, 723, 750
TaqI	TCGA	5 cut(s)	42, 84, 251, 325, 672
TasI	AATT	3 cut(s)	273, 507, 531
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	5 cut(s)	276, 689, 762, 917, 931
Tru9I	TTAA	5 cut(s)	276, 689, 762, 917, 931
TscAI	CASTG	4 cut(s)	192, 384, 604, 928
TseFI	GTSAC	2 cut(s)	169, 595
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	2 cut(s)	169, 595
TspDTI	ATGAA	3 cut(s)	534, 711, 894
TspRI	CASTG	4 cut(s)	192, 384, 604, 928
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.