Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000484.1

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

102065 .. 104313

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000484.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggatgtgattaaaacgcagcaaatctcagcgaggccgatcgagaaggtcatagttcaccctctggttcttctcagcatcgtcgacaactacaaccgggtcgccaaggacactcgcaagcgcgtcgttggggttctcctcggttcctcttaccgcggcaccgtggacgtcagcaacagctacgccgtgccctttgaagaagatgacaaggacccaagtatctggtttcttgatcacaactaccatgaagccatgtattccatgtcgaagagaattaatgcaaaggagcatgttgtgggatggtacagcacaggcccaaagttgcgagaaaatgacttagatgttcacagtttgtttaccgactatgttccaaatcctgtcttggtcataattgatgtccaacctaaggagctgggaatacccacaaaagcttactgtgctgttgaagaggttaaagagaatgctacccagaaaagccagaaggtgttcgttcatgtgccctccgaaattgctgcgcatgaagttgaggagatcggagtggaacacttgcttagagatgttaaggatacaaccatcagcactcttgcaacagaggttactgggaagctcacagctttgaaaggattggatgctaggctccgcgagattcaaggggtttgcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

221

Amino Acids

24.85

Weight (kDa)

5.91

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
Acc16I	TGCGCA	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	3 cut(s)	123, 156, 642
AciI	CCGC	3 cut(s)	154, 156, 640
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	197, 446, 619, 650
AluBI	AGCT	5 cut(s)	180, 412, 431, 607, 614
AluI	AGCT	5 cut(s)	180, 412, 431, 607, 614
AoxI	GGCC	2 cut(s)	35, 313
ApeKI	GCWGC	2 cut(s)	19, 512
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	123, 517
AspS9I	GGNCC	2 cut(s)	211, 314
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	192, 501
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	31, 499
BccI	CCATC	2 cut(s)	294, 581
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 494, 528
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	20, 157, 513
BlsI	GCNGC	3 cut(s)	21, 158, 514
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 314
BmiI	GGNNCC	4 cut(s)	145, 160, 213, 638
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	87, 619
BmuI	ACTGGG	1 cut(s)	609
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	4 cut(s)	105, 139, 154, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	105, 139, 154, 162
BseGI	GGATG	3 cut(s)	10, 305, 634
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	2 cut(s)	42, 88
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	128, 542
BseSI	GKGCMC	2 cut(s)	192, 501
BseXI	GCAGC	2 cut(s)	31, 499
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	3 cut(s)	123, 156, 642
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	37, 315
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	37, 315
Bsp1286I	GDGCHC	2 cut(s)	192, 501
Bsp143I	GATC	3 cut(s)	39, 232, 531
BspACI	CCGC	3 cut(s)	154, 156, 640
BspANI	GGCC	2 cut(s)	37, 315
BspCNI	CTCAG	2 cut(s)	41, 87
BspFNI	CGCG	3 cut(s)	123, 156, 642
BspLI	GGNNCC	4 cut(s)	145, 160, 213, 638
BspMI	ACCTGC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	105, 139, 154, 162
BssMI	GATC	3 cut(s)	39, 232, 531
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	163, 350, 437
Bst6I	CTCTTC	2 cut(s)	263, 441
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	5 cut(s)	28, 74, 337, 405, 551
BstDSI	CCRYGG	2 cut(s)	154, 162
BstF5I	GGATG	3 cut(s)	10, 305, 634
BstFNI	CGCG	3 cut(s)	123, 156, 642
BstHHI	GCGC	2 cut(s)	123, 517
BstKTI	GATC	3 cut(s)	42, 235, 534
BstMBI	GATC	3 cut(s)	39, 232, 531
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	192, 501
BstUI	CGCG	3 cut(s)	123, 156, 642
BstV1I	GCAGC	2 cut(s)	31, 499
BstXI	CCANNNNNNTGG	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	37, 315
BtgI	CCRYGG	2 cut(s)	154, 162
BtsCI	GGATG	3 cut(s)	10, 305, 634
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	2 cut(s)	123, 517
Cfr13I	GGNCC	2 cut(s)	211, 314
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	6 cut(s)	245, 253, 262, 290, 494, 518
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	28, 74, 337, 405, 551
DpnI	GATC	3 cut(s)	41, 234, 533
DpnII	GATC	3 cut(s)	39, 232, 531
Eam1104I	CTCTTC	2 cut(s)	263, 441
EarI	CTCTTC	2 cut(s)	263, 441
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
FaiI	YATR	9 cut(s)	53, 246, 254, 263, 291, 366, 389, 495, 519
FatI	CATG	6 cut(s)	244, 252, 261, 289, 493, 517
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	20, 157, 513
FokI	GGATG	3 cut(s)	17, 312, 641
Fsp4HI	GCNGC	3 cut(s)	20, 157, 513
FspBI	CTAG	1 cut(s)	633
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	2 cut(s)	122, 516
GluI	GCNGC	3 cut(s)	20, 157, 513
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	37, 315
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	123, 517
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
Hin6I	GCGC	2 cut(s)	121, 515
HinP1I	GCGC	2 cut(s)	121, 515
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	646
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	5 cut(s)	58, 85, 166, 346, 357
Hpy188I	TCNGA	2 cut(s)	505, 536
Hpy188III	TCNNGA	2 cut(s)	43, 230
Hpy8I	GTNNAC	5 cut(s)	58, 85, 166, 346, 357
Hpy99I	CGWCG	2 cut(s)	86, 128
HpyAV	CCTTC	2 cut(s)	40, 475
HpyCH4III	ACNGT	3 cut(s)	163, 350, 437
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	281, 587, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	5 cut(s)	28, 74, 337, 405, 551
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
HspAI	GCGC	2 cut(s)	121, 515
Ksp22I	TGATCA	1 cut(s)	232
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	39, 232, 531
LmnI	GCTCC	3 cut(s)	286, 409, 642
Lsp1109I	GCAGC	2 cut(s)	31, 499
LweI	GCATC	2 cut(s)	87, 619
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	3 cut(s)	41, 234, 533
MboI	GATC	3 cut(s)	39, 232, 531
MboII	GAAGA	5 cut(s)	62, 209, 212, 280, 458
MhlI	GDGCHC	2 cut(s)	192, 501
MluCI	AATT	3 cut(s)	273, 390, 507
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	8 cut(s)	27, 72, 149, 157, 442, 511, 520, 586
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	4 cut(s)	12, 276, 453, 561
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	3 cut(s)	123, 156, 642
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	3 cut(s)	39, 232, 531
NlaIII	CATG	6 cut(s)	248, 256, 265, 293, 497, 521
NlaIV	GGNNCC	4 cut(s)	145, 160, 213, 638
NsbI	TGCGCA	1 cut(s)	516
NspI	RCATGY	1 cut(s)	293
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	21, 158, 514
Ple19I	CGATCG	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	4 cut(s)	145, 160, 213, 638
PspPI	GGNCC	2 cut(s)	211, 314
PspPPI	RGGWCCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SacII	CCGCGG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	4 cut(s)	12, 276, 453, 561
SatI	GCNGC	3 cut(s)	20, 157, 513
Sau3AI	GATC	3 cut(s)	39, 232, 531
Sau96I	GGNCC	2 cut(s)	211, 314
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	192, 501
SfaNI	GCATC	2 cut(s)	87, 619
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	273, 390, 507
SsiI	CCGC	3 cut(s)	154, 156, 640
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	163, 350, 437
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	42, 84, 266
TasI	AATT	3 cut(s)	273, 390, 507
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	12, 276, 453, 561
Tru9I	TTAA	4 cut(s)	12, 276, 453, 561
TseI	GCWGC	2 cut(s)	19, 512
TspDTI	ATGAA	3 cut(s)	261, 482, 534
VpaK11BI	GGWCC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	633
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.