Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

22024883 .. 22028331

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGTGATCAAAACGCAGCAAATCTCATCGAGGCCGATCGAAAAGGTGATAGTTCACCCGCTGGTTCTGCTCAGCATCGTCGACAACTACAACAGGGTCGCCAAAGACAGTCGCAAGCGCGTCGTCGGAGTTCTGCTCGGCTCGTCGTTCAAAGGCACCGTCGACGTCACCAACAGCTACGCCGTGCCCTTTGAAGAGGATGACAAGGACCCAAGTATCTGGTTTCTTGATCACAACTACCACGAAGCCATGTATTCCATGGCAAAGAGAATAAATGCTAAGGAGCATGTTGTGGGATGGTACAGCACAGGGCCCAAATTGCGAGAAAATGACTTGGACATTCACGGTTTATTTAATGACTATGTTCCAAATCCTGTCTTGGTCATTATAGATGTCCAACCTAAGGAGCTGGGAATACCCACAAAAGCTTACTGTACTGTTGAAGAGGTTAAAGAGAATGCTACCCAGAAAAGTCAGAAGGTGTTTGTTCATGTGCCTTCTGAAATTGCTGCCCATGAAGTTGAGGAAATTGGAGTGGAACACTTGCTTAGAGACGTAAAGGATACAACCATCAGCACTCTTGCAACAGAGGTTACAGGGAAACTCACAGGTTTGAAGGGATTGGAAGCAAGACTTAAAGAGATTCGGGGTTATCTCGACCTTGTTATTGATGGCAAGCTCCCATTAAACCACGAGATATTGTACCACCTACAGGATGTGTTCAATCTACTTCCAAATCTTAATGTTTCTGATTTGGTCAAGGCCTTTTCAGTGAAAACGAATGATATGATGTTGGTTATTTATCTTTCATCCCTCATCCGAAGTGTTATCGCTCTTCACAACTTGATCAACAACAAGATGCACAATAAGGAGCACGAAAAGGCAGAAGACTCCAAACAAGTTGCTGTATCAGCTGCCGCTGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

311

Amino Acids

34.75

Weight (kDa)

6.01

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	14 - 125	7.9e-36	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	174 - 285	1.8e-39	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	84, 165
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	62, 921
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	305, 439, 707
AfiI	CCNNNNNNNGG	2 cut(s)	406, 715
AgsI	TTSAA	5 cut(s)	154, 197, 446, 619, 727
AluBI	AGCT	6 cut(s)	180, 412, 431, 682, 917, 930
AluI	AGCT	6 cut(s)	180, 412, 431, 682, 917, 930
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	1 cut(s)	549
AoxI	GGCC	3 cut(s)	35, 314, 765
ApaI	GGGCCC	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	19, 512, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	211, 314, 315
AsuHPI	GGTGA	3 cut(s)	50, 61, 163
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	192, 318
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	3 cut(s)	31, 499, 904
BccI	CCATC	3 cut(s)	294, 581, 668
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	3 cut(s)	9, 232, 849
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	931
BfmI	CTRYAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	4 cut(s)	20, 513, 918, 921
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	4 cut(s)	21, 514, 919, 922
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	211, 314, 315
BmiI	GGNNCC	3 cut(s)	160, 213, 316
BmsI	GCATC	2 cut(s)	87, 852
BpiI	GAAGAC	1 cut(s)	897
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 715
Bse21I	CCTNAGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	6 cut(s)	10, 208, 305, 724, 812, 819
BseLI	CCNNNNNNNGG	2 cut(s)	406, 715
BseMII	CTCAG	1 cut(s)	88
BseSI	GKGCMC	2 cut(s)	192, 318
BseXI	GCAGC	3 cut(s)	31, 499, 904
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	37, 316, 767
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	879
BslI	CCNNNNNNNGG	2 cut(s)	406, 715
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	37, 316, 767
Bsp120I	GGGCCC	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	192, 318, 879
Bsp143I	GATC	4 cut(s)	9, 39, 232, 849
Bsp1720I	GCTNAGC	1 cut(s)	74
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	62, 921
BspANI	GGCC	3 cut(s)	37, 316, 767
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	160, 213, 316
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	9, 39, 232, 849
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	695
Bst4CI	ACNGT	5 cut(s)	113, 163, 350, 437, 442
Bst6I	CTCTTC	3 cut(s)	192, 441, 843
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	119, 680
BstDEI	CTNAG	4 cut(s)	74, 282, 405, 551
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	6 cut(s)	10, 208, 305, 724, 812, 819
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	12, 42, 235, 852
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	4 cut(s)	9, 39, 232, 849
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 322, 914
BstNSI	RCATGY	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	2 cut(s)	192, 318
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	31, 499, 904
BstV2I	GAAGAC	1 cut(s)	897
BstXI	CCANNNNNNTGG	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	37, 316, 767
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	6 cut(s)	10, 208, 305, 724, 812, 819
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	119, 680
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	211, 314, 315
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	304, 438, 706
CviAII	CATG	5 cut(s)	253, 262, 290, 494, 518
CviQI	GTAC	3 cut(s)	304, 438, 706
DdeI	CTNAG	4 cut(s)	74, 282, 405, 551
DpnI	GATC	4 cut(s)	11, 41, 234, 851
DpnII	GATC	4 cut(s)	9, 39, 232, 849
Eam1104I	CTCTTC	3 cut(s)	192, 441, 843
EarI	CTCTTC	3 cut(s)	192, 441, 843
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	767
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	211
Eco81I	CCTNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	211, 314
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	5 cut(s)	256, 265, 293, 497, 521
FaiI	YATR	8 cut(s)	254, 263, 291, 366, 392, 495, 519, 791
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	5 cut(s)	252, 261, 289, 493, 517
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	3 cut(s)	9, 232, 849
FblI	GTMKAC	2 cut(s)	84, 165
Fnu4HI	GCNGC	4 cut(s)	20, 513, 918, 921
FokI	GGATG	6 cut(s)	17, 215, 312, 731, 799, 806
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	20, 513, 918, 921
FspBI	CTAG	1 cut(s)	931
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	20, 513, 918, 921
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	37, 316, 767
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	256, 265, 293, 497, 521
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	2 cut(s)	646, 893
HphI	GGTGA	3 cut(s)	50, 61, 163
Hpy166II	GTNNAC	3 cut(s)	58, 85, 166
Hpy188I	TCNGA	5 cut(s)	131, 480, 505, 754, 824
Hpy188III	TCNNGA	2 cut(s)	230, 659
Hpy8I	GTNNAC	3 cut(s)	58, 85, 166
Hpy99I	CGWCG	6 cut(s)	86, 128, 131, 151, 167, 170
HpyAV	CCTTC	3 cut(s)	475, 510, 613
HpyCH4III	ACNGT	5 cut(s)	113, 163, 350, 437, 442
HpyCH4IV	ACGT	2 cut(s)	168, 558
HpyCH4V	TGCA	2 cut(s)	587, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 322, 914
HpyF3I	CTNAG	4 cut(s)	74, 282, 405, 551
HpySE526I	ACGT	2 cut(s)	168, 558
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	256, 265, 293, 497, 521
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	3 cut(s)	9, 232, 849
Kzo9I	GATC	4 cut(s)	9, 39, 232, 849
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	4 cut(s)	286, 409, 687, 874
Lsp1109I	GCAGC	3 cut(s)	31, 499, 904
LweI	GCATC	2 cut(s)	87, 852
MaeI	CTAG	1 cut(s)	931
MaeII	ACGT	2 cut(s)	168, 558
MaeIII	GTNAC	2 cut(s)	169, 595
MalI	GATC	4 cut(s)	11, 41, 234, 851
MboI	GATC	4 cut(s)	9, 39, 232, 849
MboII	GAAGA	4 cut(s)	209, 458, 830, 902
MhlI	GDGCHC	3 cut(s)	192, 318, 879
MluCI	AATT	3 cut(s)	320, 507, 531
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	2 cut(s)	109, 424
MnlI	CCTC	6 cut(s)	27, 193, 442, 520, 586, 827
MseI	TTAA	5 cut(s)	357, 453, 639, 689, 744
MspA1I	CMGCKG	3 cut(s)	64, 917, 923
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	70, 322, 914
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	9, 39, 232, 849
NlaIII	CATG	5 cut(s)	256, 265, 293, 497, 521
NlaIV	GGNNCC	3 cut(s)	160, 213, 316
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	843
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	646
PkrI	GCNGC	4 cut(s)	21, 514, 919, 922
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	160, 213, 316
PspOMI	GGGCCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	211, 314, 315
PspPPI	RGGWCCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	305, 439, 707
RsaNI	GTAC	3 cut(s)	304, 438, 706
SalI	GTCGAC	2 cut(s)	83, 164
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	5 cut(s)	357, 453, 639, 689, 744
SatI	GCNGC	4 cut(s)	20, 513, 918, 921
Sau3AI	GATC	4 cut(s)	9, 39, 232, 849
Sau96I	GGNCC	3 cut(s)	211, 314, 315
SchI	GAGTC	1 cut(s)	887
SduI	GDGCHC	3 cut(s)	192, 318, 879
SfaNI	GCATC	2 cut(s)	87, 852
SfcI	CTRYAG	1 cut(s)	713
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	320, 507, 531
SseBI	AGGCCT	1 cut(s)	767
SsiI	CCGC	2 cut(s)	62, 921
SspMI	CTAG	1 cut(s)	931
StuI	AGGCCT	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	5 cut(s)	113, 163, 350, 437, 442
TaiI	ACGT	2 cut(s)	171, 561
TaqI	TCGA	5 cut(s)	32, 42, 84, 165, 660
TasI	AATT	3 cut(s)	320, 507, 531
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	5 cut(s)	357, 453, 639, 689, 744
Tru9I	TTAA	5 cut(s)	357, 453, 639, 689, 744
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	19, 512, 917
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	482, 534, 801
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	2 cut(s)	84, 165
XspI	CTAG	1 cut(s)	931
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.