Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

25697516 .. 25701507

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1147900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGTGGTAAAAACGCAGCAAATCTCGGCGAGGCCGATCGAGAGGGTGATAGTTCACCCACTGGTTCTGCTCAGCATCGTCGACAACTACAACAGGGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGAGTTCTGCTCGGCTCGTCGTACAAGGGCACCGTCGACGTCACCAACAGCTACGCCGTTCCCTTTGAAGAAGATGATAAGGATCCCAGTATCTGGTTTCTTGATCACAACTACCATGAAGCCATGTATTCCATGGCAAAGAGAATAAATGCAAAGGAGCACGTTGTGGGATGGTACAGCACAGGTCCAAAATTGAGAGAAAATGACTTGGACATTCACGGTTTATTTAATGGTTATGTTCCAAATCCTGTCTTGGTCATAATTGATGTCCAACCTAAGGAGCTGGGAATACCAACAAAAGCTTACTGTGCCGTTGAAGAGGTGAAAGAGAATGCTACCCAGAAAAGCCAGAAGGTGTTCGTTCATGTGCCTTCTGAAATTGCTGCCCATGAAGTTGAGGAAATTGGAGTGGAACACTTGCTTAGAGATGTGAAAGATACAACCATCAGCACTCTTGCAACAGAGGTTACAGGGAAACTCACAGCCTTGAAGGGATTGGAAGCAAGACTTAAGGAGATTCGGGGTTATCTGGACCTTGTTATTGATGGCAAGCTCCCATTAAACCACGAGATTTTGTACCACCTACAGGATGTGTTCAATCTACTTCCAAATCTTAATGTTTCTGATCTCATCAAGGCCTTTTCAGTGAAAACAAATGATATGATGTTGGTTATATATCTTTCTTCCCTCATCCGAAGCGTTATTGCTCTTCACAACTTGATCAACAACAAGATGCACAATAAGGAGCATGAAAGGGCAGAAGACTCTAAACAAGTTGCCGTAACAGCTGCAGCTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

311

Amino Acids

34.76

Weight (kDa)

6.12

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	14 - 125	6.8e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	174 - 285	6.8e-40	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccI	GTMKAC	2 cut(s)	84, 165
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	2 cut(s)	206, 219
AcyI	GRCGYC	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	3 cut(s)	152, 305, 707
AfiI	CCNNNNNNNGG	3 cut(s)	222, 406, 715
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	4 cut(s)	197, 446, 619, 727
AluBI	AGCT	7 cut(s)	180, 412, 431, 682, 917, 923, 930
AluI	AGCT	7 cut(s)	180, 412, 431, 682, 917, 923, 930
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	35, 765
ApeKI	GCWGC	4 cut(s)	19, 512, 917, 920
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	314, 661
AsuHPI	GGTGA	4 cut(s)	50, 61, 163, 463
AvaII	GGWCC	2 cut(s)	314, 661
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	31, 499, 904
BccI	CCATC	3 cut(s)	294, 581, 668
BceAI	ACGGC	3 cut(s)	170, 425, 893
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BclI	TGATCA	2 cut(s)	232, 849
BfmI	CTRYAG	2 cut(s)	713, 918
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	4 cut(s)	20, 513, 918, 921
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	4 cut(s)	21, 514, 919, 922
Bme18I	GGWCC	2 cut(s)	314, 661
BmgT120I	GGNCC	2 cut(s)	314, 661
BmiI	GGNNCC	2 cut(s)	160, 213
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	87, 852
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	897
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
Bpu1102I	GCTNAGC	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 406, 715
Bse1I	ACTGG	2 cut(s)	69, 216
Bse21I	CCTNAGG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	4 cut(s)	10, 305, 724, 819
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	222, 406, 715
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	2 cut(s)	69, 216
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	31, 499, 904
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	37, 767
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	222, 406, 715
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	37, 767
Bsp1286I	GDGCHC	2 cut(s)	161, 291
Bsp143I	GATC	5 cut(s)	39, 211, 232, 754, 849
Bsp1720I	GCTNAGC	1 cut(s)	74
Bsp19I	CCATGG	1 cut(s)	261
BspANI	GGCC	2 cut(s)	37, 767
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	160, 213
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	2 cut(s)	206, 219
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	69, 216
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	5 cut(s)	39, 211, 232, 754, 849
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	163, 350, 437
Bst6I	CTCTTC	2 cut(s)	441, 843
BstACI	GRCGYC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	119, 680
BstDEI	CTNAG	3 cut(s)	74, 405, 551
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	10, 305, 724, 819
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	42, 214, 235, 757, 852
BstMBI	GATC	5 cut(s)	39, 211, 232, 754, 849
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 914
BstSFI	CTRYAG	2 cut(s)	713, 918
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	31, 499, 904
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	37, 767
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	10, 305, 724, 819
BtsIMutI	CAGTG	2 cut(s)	62, 780
Cac8I	GCNNGC	2 cut(s)	119, 680
CaiI	CAGNNNCTG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	314, 661
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	151, 304, 706
CviAII	CATG	6 cut(s)	245, 253, 262, 494, 518, 878
CviQI	GTAC	3 cut(s)	151, 304, 706
DdeI	CTNAG	3 cut(s)	74, 405, 551
DpnI	GATC	5 cut(s)	41, 213, 234, 756, 851
DpnII	GATC	5 cut(s)	39, 211, 232, 754, 849
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	2 cut(s)	441, 843
EarI	CTCTTC	2 cut(s)	441, 843
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	767
Eco47I	GGWCC	2 cut(s)	314, 661
Eco81I	CCTNAGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	248, 256, 265, 497, 521, 881
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FatI	CATG	6 cut(s)	244, 252, 261, 493, 517, 877
FbaI	TGATCA	2 cut(s)	232, 849
FblI	GTMKAC	2 cut(s)	84, 165
Fnu4HI	GCNGC	4 cut(s)	20, 513, 918, 921
FokI	GGATG	4 cut(s)	17, 312, 731, 806
Fsp4HI	GCNGC	4 cut(s)	20, 513, 918, 921
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	20, 513, 918, 921
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	37, 767
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	248, 256, 265, 497, 521, 881
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	2 cut(s)	646, 893
HphI	GGTGA	4 cut(s)	50, 61, 163, 463
Hpy166II	GTNNAC	3 cut(s)	58, 85, 166
Hpy188I	TCNGA	4 cut(s)	131, 505, 754, 824
Hpy188III	TCNNGA	3 cut(s)	43, 230, 659
Hpy8I	GTNNAC	3 cut(s)	58, 85, 166
Hpy99I	CGWCG	6 cut(s)	86, 128, 131, 151, 167, 170
HpyAV	CCTTC	3 cut(s)	475, 510, 613
HpyCH4III	ACNGT	3 cut(s)	163, 350, 437
HpyCH4IV	ACGT	2 cut(s)	168, 291
HpyCH4V	TGCA	4 cut(s)	281, 587, 865, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 914
HpyF3I	CTNAG	3 cut(s)	74, 405, 551
HpySE526I	ACGT	2 cut(s)	168, 291
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	248, 256, 265, 497, 521, 881
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	232, 849
Kzo9I	GATC	5 cut(s)	39, 211, 232, 754, 849
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	4 cut(s)	286, 409, 687, 874
Lsp1109I	GCAGC	3 cut(s)	31, 499, 904
LweI	GCATC	2 cut(s)	87, 852
MaeII	ACGT	2 cut(s)	168, 291
MaeIII	GTNAC	3 cut(s)	169, 595, 910
MalI	GATC	5 cut(s)	41, 213, 234, 756, 851
MboI	GATC	5 cut(s)	39, 211, 232, 754, 849
MboII	GAAGA	6 cut(s)	209, 212, 458, 804, 830, 902
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	161, 291
MluCI	AATT	4 cut(s)	320, 390, 507, 531
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	2 cut(s)	109, 424
MnlI	CCTC	6 cut(s)	27, 39, 442, 520, 586, 827
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	4 cut(s)	357, 639, 689, 744
MspA1I	CMGCKG	2 cut(s)	917, 923
MspCI	CTTAAG	1 cut(s)	638
Mva1269I	GAATGC	1 cut(s)	466
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	437, 914
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	39, 211, 232, 754, 849
NlaIII	CATG	6 cut(s)	248, 256, 265, 497, 521, 881
NlaIV	GGNNCC	2 cut(s)	160, 213
NmeAIII	GCCGAG	2 cut(s)	8, 120
NmuCI	GTSAC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	767
PciSI	GCTCTTC	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	4 cut(s)	21, 514, 919, 922
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	160, 213
PspPI	GGNCC	2 cut(s)	314, 661
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	2 cut(s)	917, 923
RsaI	GTAC	3 cut(s)	152, 305, 707
RsaNI	GTAC	3 cut(s)	151, 304, 706
SalI	GTCGAC	2 cut(s)	83, 164
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	357, 639, 689, 744
SatI	GCNGC	4 cut(s)	20, 513, 918, 921
Sau3AI	GATC	5 cut(s)	39, 211, 232, 754, 849
Sau96I	GGNCC	2 cut(s)	314, 661
SchI	GAGTC	1 cut(s)	887
SduI	GDGCHC	2 cut(s)	161, 291
SfaNI	GCATC	2 cut(s)	87, 852
SfcI	CTRYAG	2 cut(s)	713, 918
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	314, 661
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	4 cut(s)	320, 390, 507, 531
SseBI	AGGCCT	1 cut(s)	767
StuI	AGGCCT	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	163, 350, 437
TaiI	ACGT	2 cut(s)	171, 294
TaqI	TCGA	3 cut(s)	42, 84, 165
TasI	AATT	4 cut(s)	320, 390, 507, 531
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	4 cut(s)	357, 639, 689, 744
Tru9I	TTAA	4 cut(s)	357, 639, 689, 744
TscAI	CASTG	2 cut(s)	69, 780
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	19, 512, 917, 920
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	261, 482, 534, 894
TspRI	CASTG	2 cut(s)	69, 780
Van91I	CCANNNNNTGG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	314, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	2 cut(s)	84, 165
XmnI	GAANNNNTTC	1 cut(s)	485
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.