Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Forward (+)

1735725 .. 1738740

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAGAAAGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAAGGATTCAAGCAAGCGTGTCGTCGGTGTTCTTCTGGGGAGCAGCTCTCGTGGTGTTGTTGATGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATGCTACTCAGAAAAGCCAGAAAGTTTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAAGTTGAGGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCTTCTCCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009987 GO:0010016 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051603 GO:0071704 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

308

Amino Acids

34.73

Weight (kDa)

6.06

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	13 - 125	8.6e-38	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	174 - 285	4.3e-40	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	922
AccI	GTMKAC	2 cut(s)	84, 500
AccII	CGCG	3 cut(s)	99, 350, 587
AccIII	TCCGGA	1 cut(s)	648
AclWI	GGATC	1 cut(s)	640
AcoI	YGGCCR	1 cut(s)	906
AfaI	GTAC	2 cut(s)	305, 580
AfiI	CCNNNNNNNGG	2 cut(s)	715, 822
AflIII	ACRYGT	2 cut(s)	261, 348
AgsI	TTSAA	5 cut(s)	114, 268, 358, 619, 727
AhlI	ACTAGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	4 cut(s)	150, 180, 682, 924
AluI	AGCT	4 cut(s)	150, 180, 682, 924
AlwI	GGATC	1 cut(s)	640
Aor13HI	TCCGGA	1 cut(s)	648
AoxI	GGCC	3 cut(s)	313, 765, 906
ApeKI	GCWGC	2 cut(s)	147, 512
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	908
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	629
BbvI	GCAGC	2 cut(s)	159, 499
BccI	CCATC	1 cut(s)	717
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	2 cut(s)	232, 849
BcuI	ACTAGT	1 cut(s)	64
BfaI	CTAG	2 cut(s)	65, 925
BfmI	CTRYAG	2 cut(s)	501, 713
BfuAI	ACCTGC	1 cut(s)	922
BisI	GCNGC	2 cut(s)	148, 513
BlsI	GCNGC	2 cut(s)	149, 514
Bme1390I	CCNGG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	228, 619, 783
BoxI	GACNNNNGTC	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	629
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bpu10I	CCTNAGC	2 cut(s)	105, 551
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	2 cut(s)	715, 822
Bse1I	ACTGG	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	7 cut(s)	10, 58, 208, 346, 562, 634, 812
BseLI	CCNNNNNNNGG	2 cut(s)	715, 822
BseMII	CTCAG	3 cut(s)	482, 565, 582
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	212, 461
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	159, 499
Bsh1236I	CGCG	3 cut(s)	99, 350, 587
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	315, 767, 908
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	715, 822
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	315, 767, 908
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	39, 232, 645, 849
Bsp68I	TCGCGA	1 cut(s)	587
BspANI	GGCC	3 cut(s)	315, 767, 908
BspCNI	CTCAG	3 cut(s)	481, 564, 583
BspEI	TCCGGA	1 cut(s)	648
BspFNI	CGCG	3 cut(s)	99, 350, 587
BspHI	TCATGA	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	39, 232, 645, 849
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	5 cut(s)	74, 105, 468, 551, 591
BstF5I	GGATG	7 cut(s)	10, 58, 208, 346, 562, 634, 812
BstFNI	CGCG	3 cut(s)	99, 350, 587
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	4 cut(s)	42, 235, 648, 852
BstMBI	GATC	4 cut(s)	39, 232, 645, 849
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 914
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	265, 293
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	501, 713
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	3 cut(s)	99, 350, 587
BstV1I	GCAGC	2 cut(s)	159, 499
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	315, 767, 908
BtrI	CACGTC	1 cut(s)	635
BtsCI	GGATG	7 cut(s)	10, 58, 208, 346, 562, 634, 812
BtsI	GCAGTG	3 cut(s)	192, 447, 597
BtsIMutI	CAGTG	3 cut(s)	192, 447, 597
BtuMI	TCGCGA	1 cut(s)	587
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	838
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	2 cut(s)	25, 88
Csp6I	GTAC	2 cut(s)	304, 579
CspCI	CAANNNNNGTGG	4 cut(s)	51, 86, 885, 920
CviAII	CATG	8 cut(s)	245, 262, 290, 494, 518, 695, 790, 878
CviQI	GTAC	2 cut(s)	304, 579
DdeI	CTNAG	5 cut(s)	74, 105, 468, 551, 591
DpnI	GATC	4 cut(s)	41, 234, 647, 851
DpnII	GATC	4 cut(s)	39, 232, 645, 849
EaeI	YGGCCR	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	8 cut(s)	248, 265, 293, 497, 521, 698, 793, 881
FatI	CATG	8 cut(s)	244, 261, 289, 493, 517, 694, 789, 877
FbaI	TGATCA	2 cut(s)	232, 849
FblI	GTMKAC	2 cut(s)	84, 500
Fnu4HI	GCNGC	2 cut(s)	148, 513
FokI	GGATG	7 cut(s)	17, 45, 215, 353, 569, 641, 799
Fsp4HI	GCNGC	2 cut(s)	148, 513
FspBI	CTAG	2 cut(s)	65, 925
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	2 cut(s)	148, 513
HaeIII	GGCC	3 cut(s)	315, 767, 908
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	2 cut(s)	25, 88
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	8 cut(s)	248, 265, 293, 497, 521, 698, 793, 881
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	110, 248, 417, 893
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	85, 346, 501, 751
Hpy188I	TCNGA	2 cut(s)	471, 825
Hpy188III	TCNNGA	9 cut(s)	43, 230, 268, 326, 518, 586, 641, 649, 659
Hpy8I	GTNNAC	4 cut(s)	85, 346, 501, 751
Hpy99I	CGWCG	3 cut(s)	86, 104, 131
HpyAV	CCTTC	3 cut(s)	613, 668, 778
HpyCH4IV	ACGT	2 cut(s)	634, 720
HpyCH4V	TGCA	4 cut(s)	185, 440, 602, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 914
HpyF3I	CTNAG	5 cut(s)	74, 105, 468, 551, 591
HpySE526I	ACGT	2 cut(s)	634, 720
Hsp92II	CATG	8 cut(s)	248, 265, 293, 497, 521, 698, 793, 881
HspAI	GCGC	1 cut(s)	836
Kpn2I	TCCGGA	1 cut(s)	648
Ksp22I	TGATCA	2 cut(s)	232, 849
Kzo9I	GATC	4 cut(s)	39, 232, 645, 849
LmnI	GCTCC	5 cut(s)	144, 286, 541, 687, 843
Lsp1109I	GCAGC	2 cut(s)	159, 499
LweI	GCATC	3 cut(s)	228, 619, 783
MaeI	CTAG	2 cut(s)	65, 925
MaeII	ACGT	2 cut(s)	634, 720
MaeIII	GTNAC	3 cut(s)	169, 595, 861
MalI	GATC	4 cut(s)	41, 234, 647, 851
MboI	GATC	4 cut(s)	39, 232, 645, 849
MboII	GAAGA	2 cut(s)	128, 629
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	3 cut(s)	273, 507, 831
MluI	ACGCGT	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	2 cut(s)	257, 887
MmeI	TCCRAC	1 cut(s)	606
Mox20I	TGGCCA	1 cut(s)	908
MroI	TCCGGA	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	3 cut(s)	12, 276, 453
Msp20I	TGGCCA	1 cut(s)	908
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	3 cut(s)	99, 350, 587
MwoI	GCNNNNNNNGC	2 cut(s)	437, 914
NdeII	GATC	4 cut(s)	39, 232, 645, 849
NlaIII	CATG	8 cut(s)	248, 265, 293, 497, 521, 698, 793, 881
NmuCI	GTSAC	2 cut(s)	169, 595
NruI	TCGCGA	1 cut(s)	587
NspI	RCATGY	2 cut(s)	265, 293
PagI	TCATGA	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	767
PciI	ACATGT	1 cut(s)	261
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	110, 417
PkrI	GCNGC	2 cut(s)	149, 514
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	2 cut(s)	256, 887
PpsI	GAGTC	2 cut(s)	256, 887
PscI	ACATGT	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	593
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	645
PvuI	CGATCG	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	587
RsaI	GTAC	2 cut(s)	305, 580
RsaNI	GTAC	2 cut(s)	304, 579
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	12, 276, 453
SatI	GCNGC	2 cut(s)	148, 513
Sau3AI	GATC	4 cut(s)	39, 232, 645, 849
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	257, 887
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	3 cut(s)	228, 619, 783
SfcI	CTRYAG	2 cut(s)	501, 713
SpeI	ACTAGT	1 cut(s)	64
Sse9I	AATT	3 cut(s)	273, 507, 831
SseBI	AGGCCT	1 cut(s)	767
SspMI	CTAG	2 cut(s)	65, 925
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	282
TaiI	ACGT	2 cut(s)	637, 723
TaqI	TCGA	4 cut(s)	42, 84, 325, 672
TasI	AATT	3 cut(s)	273, 507, 831
TfiI	GAWTC	2 cut(s)	110, 417
Tru1I	TTAA	3 cut(s)	12, 276, 453
Tru9I	TTAA	3 cut(s)	12, 276, 453
TscAI	CASTG	3 cut(s)	192, 447, 604
TseFI	GTSAC	2 cut(s)	169, 595
TseI	GCWGC	2 cut(s)	147, 512
Tsp45I	GTSAC	2 cut(s)	169, 595
TspDTI	ATGAA	4 cut(s)	47, 482, 534, 894
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	3 cut(s)	192, 447, 604
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	2 cut(s)	265, 293
XmiI	GTMKAC	2 cut(s)	84, 500
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	65, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.