Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

26338371 .. 26342315

Gene Structure 3945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G247000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATGTGATAAAAACGCAGCAAATCTCAGCGAGGCCGATCGAGAAGGTGATAGTTCACCCTCTGGTTTTGCTCAGCATCGTCGACAATTACAACAGGGTCGCCAAGGACACTCGCAAGCGCGTCGTCGGCGTTCTGCTTGGCTCCTCTTTCAAGGGCACCGTTGACGTCACCAACAGCTATGCCGTGCCCTTTGAAGAAGATGACAGGGACCCTAGTATTTGGTTTCTTGATCACAACTACCATGAGGCCATGTATGCCATGGCGAAGAGAATAAACGCAAAGGAGCATGTTGTGGGATGGTACAGCACGGGTCCAAAATTGCGAGAAAATGACTTGGACATTCACGCTTTATTTAATGACTATGTCCCAAATCCTGTCTTGGTCATAATTGATGTCCAACCAAAGGAGCTGGGTATACCCACAAAAGCTTACTGTACTGTTGAAGAGGTTAAAGAGAACGCTACCCAGAAAAGCCAGAAGGTGTTCGTTCATGTGCCTTCTGAAATTGCTGCCCATGAAGTTGAGGAAATTGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATCAGCACTCTTGCAACAGAGGTTACAGGGAAACTCACAGCCTTGAAGGGATTGGAAGCAAGACTTCGAGAGATTCGGGGTTATCTTGACCTTGTTATTGATGGAAAGCTCCCTTTAAACCACGAGATTTTGTACCATCTACAGGATGTGTTCAATCTACTTCCAAATCTTAATGTTTCCGAGTTGATCAAGGCTTTTTCAGTGAAAACAAATGATATGATGTTGGTTATCTATCTTTCTTCTCTCATCCGAAGTGTTATTGCTCTTCACAACTTGATTAACAACAAGATGCACAATAAGGAGCATGAAAAGGCAGAAGACTCAAAACAAGTTGCTGTACCAGCTGCAGCCGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

311

Amino Acids

34.86

Weight (kDa)

6.01

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	84, 418
AccII	CGCG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	305, 439, 707, 912
AfiI	CCNNNNNNNGG	2 cut(s)	406, 715
AgsI	TTSAA	5 cut(s)	154, 197, 446, 619, 727
AluBI	AGCT	6 cut(s)	180, 412, 431, 682, 917, 930
AluI	AGCT	6 cut(s)	180, 412, 431, 682, 917, 930
AoxI	GGCC	2 cut(s)	35, 249
ApeKI	GCWGC	4 cut(s)	19, 512, 917, 920
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	211, 314
AsuHPI	GGTGA	3 cut(s)	50, 61, 163
AvaII	GGWCC	2 cut(s)	211, 314
BaeGI	GKGCMC	2 cut(s)	161, 192
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	897
BbvI	GCAGC	3 cut(s)	31, 499, 904
BccI	CCATC	4 cut(s)	294, 581, 668, 717
BceAI	ACGGC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	2 cut(s)	232, 759
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	713, 918
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	4 cut(s)	20, 513, 918, 921
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	4 cut(s)	21, 514, 919, 922
Bme18I	GGWCC	2 cut(s)	211, 314
BmgT120I	GGNCC	2 cut(s)	211, 314
BmiI	GGNNCC	5 cut(s)	145, 160, 212, 213, 315
BmsI	GCATC	2 cut(s)	87, 852
BpiI	GAAGAC	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	105, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 715
BseDI	CCNNGG	2 cut(s)	105, 261
BseGI	GGATG	4 cut(s)	10, 305, 724, 819
BseLI	CCNNNNNNNGG	2 cut(s)	406, 715
BseMII	CTCAG	2 cut(s)	42, 88
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	2 cut(s)	161, 192
BseXI	GCAGC	3 cut(s)	31, 499, 904
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	37, 251
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	224, 353
BslI	CCNNNNNNNGG	2 cut(s)	406, 715
BsmFI	GGGAC	2 cut(s)	224, 353
BsnI	GGCC	2 cut(s)	37, 251
Bsp1286I	GDGCHC	2 cut(s)	161, 192
Bsp143I	GATC	3 cut(s)	39, 232, 759
Bsp1720I	GCTNAGC	1 cut(s)	74
Bsp19I	CCATGG	1 cut(s)	261
BspANI	GGCC	2 cut(s)	37, 251
BspCNI	CTCAG	2 cut(s)	41, 87
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	5 cut(s)	145, 160, 212, 213, 315
BspMAI	CTGCAG	1 cut(s)	922
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	105, 261
BssMI	GATC	3 cut(s)	39, 232, 759
BssNAI	GTATAC	1 cut(s)	419
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	105, 261
Bst1107I	GTATAC	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	163, 437, 442
Bst6I	CTCTTC	3 cut(s)	263, 441, 843
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	28, 74, 551
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	10, 305, 724, 819
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	42, 235, 762
BstMBI	GATC	3 cut(s)	39, 232, 759
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 257, 914
BstNSI	RCATGY	1 cut(s)	293
BstSFI	CTRYAG	2 cut(s)	713, 918
BstSLI	GKGCMC	2 cut(s)	161, 192
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	31, 499, 904
BstV2I	GAAGAC	1 cut(s)	897
BstZ17I	GTATAC	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	37, 251
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	10, 305, 724, 819
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	211, 314
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	304, 438, 706, 911
CviAII	CATG	7 cut(s)	245, 253, 262, 290, 494, 518, 878
CviQI	GTAC	4 cut(s)	304, 438, 706, 911
DdeI	CTNAG	3 cut(s)	28, 74, 551
DpnI	GATC	3 cut(s)	41, 234, 761
DpnII	GATC	3 cut(s)	39, 232, 759
DraI	TTTAAA	1 cut(s)	690
Eam1104I	CTCTTC	3 cut(s)	263, 441, 843
EarI	CTCTTC	3 cut(s)	263, 441, 843
Eco130I	CCWWGG	2 cut(s)	105, 261
Eco47I	GGWCC	2 cut(s)	211, 314
EcoO109I	RGGNCCY	1 cut(s)	211
EcoT14I	CCWWGG	2 cut(s)	105, 261
ErhI	CCWWGG	2 cut(s)	105, 261
FaeI	CATG	7 cut(s)	248, 256, 265, 293, 497, 521, 881
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	2 cut(s)	224, 353
FatI	CATG	7 cut(s)	244, 252, 261, 289, 493, 517, 877
FbaI	TGATCA	2 cut(s)	232, 759
FblI	GTMKAC	2 cut(s)	84, 418
Fnu4HI	GCNGC	4 cut(s)	20, 513, 918, 921
FokI	GGATG	4 cut(s)	17, 312, 731, 806
Fsp4HI	GCNGC	4 cut(s)	20, 513, 918, 921
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	20, 513, 918, 921
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	37, 251
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	248, 256, 265, 293, 497, 521, 881
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	85, 166
HindII	GTYRAC	2 cut(s)	85, 166
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	2 cut(s)	646, 893
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	3 cut(s)	50, 61, 163
Hpy166II	GTNNAC	4 cut(s)	58, 85, 166, 419
Hpy188I	TCNGA	3 cut(s)	505, 754, 824
Hpy188III	TCNNGA	4 cut(s)	43, 230, 641, 659
Hpy8I	GTNNAC	4 cut(s)	58, 85, 166, 419
Hpy99I	CGWCG	3 cut(s)	86, 128, 131
HpyAV	CCTTC	5 cut(s)	40, 475, 510, 556, 613
HpyCH4III	ACNGT	3 cut(s)	163, 437, 442
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	587, 865, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 257, 914
HpyF3I	CTNAG	3 cut(s)	28, 74, 551
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	7 cut(s)	248, 256, 265, 293, 497, 521, 881
HspAI	GCGC	1 cut(s)	121
KflI	GGGWCCC	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	232, 759
Kzo9I	GATC	3 cut(s)	39, 232, 759
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	5 cut(s)	149, 286, 409, 687, 874
Lsp1109I	GCAGC	3 cut(s)	31, 499, 904
LweI	GCATC	2 cut(s)	87, 852
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	169, 595
MalI	GATC	3 cut(s)	41, 234, 761
MboI	GATC	3 cut(s)	39, 232, 759
MboII	GAAGA	7 cut(s)	209, 212, 280, 458, 804, 830, 902
MhlI	GDGCHC	2 cut(s)	161, 192
MluCI	AATT	5 cut(s)	88, 320, 390, 507, 531
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	7 cut(s)	27, 72, 157, 241, 442, 520, 586
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	5 cut(s)	357, 453, 689, 744, 852
MspA1I	CMGCKG	1 cut(s)	917
MspI	CCGG	1 cut(s)	924
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	129, 257, 914
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	3 cut(s)	39, 232, 759
NlaIII	CATG	7 cut(s)	248, 256, 265, 293, 497, 521, 881
NlaIV	GGNNCC	5 cut(s)	145, 160, 212, 213, 315
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	843
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	646
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	21, 514, 919, 922
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	5 cut(s)	145, 160, 212, 213, 315
PspPI	GGNCC	2 cut(s)	211, 314
PspPPI	RGGWCCY	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	922
PsyI	GACNNNGTC	1 cut(s)	365
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	4 cut(s)	305, 439, 707, 912
RsaNI	GTAC	4 cut(s)	304, 438, 706, 911
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	5 cut(s)	357, 453, 689, 744, 852
SatI	GCNGC	4 cut(s)	20, 513, 918, 921
Sau3AI	GATC	3 cut(s)	39, 232, 759
Sau96I	GGNCC	2 cut(s)	211, 314
SchI	GAGTC	1 cut(s)	887
SduI	GDGCHC	2 cut(s)	161, 192
SfaNI	GCATC	2 cut(s)	87, 852
SfcI	CTRYAG	2 cut(s)	713, 918
SinI	GGWCC	2 cut(s)	211, 314
Sse9I	AATT	5 cut(s)	88, 320, 390, 507, 531
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	105, 261
TaaI	ACNGT	3 cut(s)	163, 437, 442
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	42, 84, 640
TasI	AATT	5 cut(s)	88, 320, 390, 507, 531
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	5 cut(s)	357, 453, 689, 744, 852
Tru9I	TTAA	5 cut(s)	357, 453, 689, 744, 852
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	19, 512, 917, 920
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	482, 534, 894
TspRI	CASTG	1 cut(s)	780
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	211, 314
XceI	RCATGY	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	2 cut(s)	84, 418
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	216
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.