Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003135

Physical Location & Seq

Genomic Coordinates Reverse (-)

38860018 .. 38864421

Gene Structure 4404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAAAGCATCCAAGCGTAAGTACATGGAATTCTTTGCTGAGGCTCTTAATGGAGTGGGAATGATATGCGGTTTGTTGTTGGTTTATATAGTGCGTGGGGTAACTGCTGCAAACGGAGGGACTAGTTGGTTCAGAAACACTCTAAACACGAGTCGTTTGGACAATTACTACTGGACCTTGGCTACGTTGAGTGCTGCTAATCTGGTATTGTTTCTTGTCGTGATCTCTTCGCATCACATTTGCAGAAAATCGAGGGGTTTTAGACAAAGATCCGAGAGTGTCACCGGAGCTCAGATCGCCATGGACGTCATCAAGACTCAGCAAATATCGGCGAGGTCGATCGAGAAGGTGATAGTTCACCCGCTGGTGCTTCTCAGCATCGTCGACAACTACAACCGAGTCGCCAAGGACACTCGCAAACGAGTCGTCGGAGTCCTTCTCGGAAGCACTTACAAAGGCGTCGTCGACGTCTCCAACAGCTACGCAGTGCCTTTTGAAGAAGATGATAAAGACCCTAGCATTTGGTTTCTTGATCACAACTACCATGAAGCAATGTACTCTATGTTCAAGAGAATCAATGCAAAGGAGCACGTCGTAGGTTGGTATAGTACAGGGCCGAAACTACGAGAGAATGATCTTGATGTTCACAGCTTATTCCACAACTATGCCCCAAATCCTGTATTGGTCATTATTGACGTCCAGCCAAAGGAGCTGGGAATACCCACCAAAGCATACTATGATGTCGAAGAAGTTAAAGAGAATGCAACTCAAAAGAGCCAGAAGATTTTTGTTCATGTACCCTCTGAAATTGCTGCTCATGAGGTTGAGGAAATCGGAGTGGAACACTTATTAAGGGATGTGAAGGATACAACCATCAGCACACTTGCAAATGAGGTTACTGGAAAAATTACTGCTCTAAAAGGTTTGGATGCACGGTTACGAGAAATCCGCAGTTATCTAGATCTTGTGATTGATGAAAAGCTTCCACTAAATCATGAGATACTTTACCATTTGCAGGACGTGTTCAATCTGCTTCCAAATCTTAATGTGGCCGAGTTAGTTAAGGGATTTTCAGTAAAAACAAATGACATGATGTTGGTTATATATCTTTCTTCTGTCATTCGTAGTGTCATCGCCCTCCACAACTTGATCAATAACAAGATGCTCAACAAAGAACATGAGAAAGCTGAGGATGCGAAGCCAGCAACAGCCCCATCTGCTTCTGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

411

Amino Acids

46.1

Weight (kDa)

7.28

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	113 - 225	2.2e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	274 - 385	3.1e-38	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11270 AT3G11270 AT5G05780 AT5G05780
fragaria_vesca	FvH4_6g11900 FvH4_7g24080
malus_domestica	MD01G1147900.v1.1 MD04G1148200.v1.1 MD07G1215000.v1.1 MD12G1161700.v1.1
prunus_persica	Prupe.2G247000_v2.0.a1 Prupe.2G247000_v2.0.a1 Prupe.6G272100_v2.0.a1
pyrus_communis	pycom01g16670 pycom04g13410 pycom07g19730 pycom12g15350
rosa_chinensis	RchiOBHm_Chr1g0369511 RchiOBHm_Chr3g0463641
rosa_laevigata	RLG00000024766 RLG00000027123
rosa_multiflora	Rmu_sc0003267.1_g000028 Rmu_ssc0000484.1_g000026
rosa_roxburghii	Rroxscaffold_4G00287570 Rroxscaffold_6G00416390
rosa_rugosa	Rorug01G0351000 Rorug03G0066700
rosa_samantha	Rh1AG359100 Rh1BG322800 Rh1CG336100 Rh1DG353600 Rh3AG123700 Rh3BG128400 Rh3CG130600 Rh3DG129000
rosa_wichuraiana	Rw1G031620 Rw3G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	309, 471, 699
AccI	GTMKAC	2 cut(s)	384, 465
AciI	CCGC	3 cut(s)	69, 362, 949
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	1050
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	4 cut(s)	306, 459, 468, 696
AfaI	GTAC	4 cut(s)	23, 557, 610, 798
AfiI	CCNNNNNNNGG	2 cut(s)	706, 1015
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	3 cut(s)	497, 568, 1027
AhlI	ACTAGT	1 cut(s)	122
AjiI	CACGTC	2 cut(s)	592, 1021
AluBI	AGCT	7 cut(s)	290, 480, 651, 712, 982, 1187, 1230
AluI	AGCT	7 cut(s)	290, 480, 651, 712, 982, 1187, 1230
Alw21I	GWGCWC	2 cut(s)	292, 591
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	2 cut(s)	614, 1050
ApeKI	GCWGC	3 cut(s)	107, 194, 812
ApoI	RAATTY	1 cut(s)	29
ArsI	GACNNNNNNTTYG	4 cut(s)	411, 443, 447, 479
Asp700I	GAANNNNTTC	1 cut(s)	981
AspS9I	GGNCC	2 cut(s)	174, 614
AsuHPI	GGTGA	3 cut(s)	274, 350, 361
AvaII	GGWCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	292, 591
BbvCI	CCTCAGC	2 cut(s)	39, 1188
BbvI	GCAGC	3 cut(s)	94, 181, 799
BccI	CCATC	2 cut(s)	881, 1222
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	2 cut(s)	532, 1149
BcoDI	GTCTC	1 cut(s)	475
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	3 cut(s)	123, 516, 959
BfuI	GTATCC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	3 cut(s)	108, 195, 813
BlsI	GCNGC	3 cut(s)	109, 196, 814
Bme18I	GGWCC	1 cut(s)	174
BmgBI	CACGTC	2 cut(s)	592, 1021
BmgT120I	GGNCC	2 cut(s)	174, 614
BmsI	GCATC	6 cut(s)	17, 241, 387, 919, 1152, 1183
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
Bpu10I	CCTNAGC	2 cut(s)	39, 1188
BsaHI	GRCGYC	4 cut(s)	306, 459, 468, 696
BsaJI	CCNNGG	3 cut(s)	177, 300, 405
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 1015
Bse1I	ACTGG	2 cut(s)	176, 904
Bse3DI	GCAATG	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	177, 300, 405
BseGI	GGATG	4 cut(s)	8, 862, 934, 1198
BseLI	CCNNNNNNNGG	2 cut(s)	706, 1015
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	5 cut(s)	30, 305, 332, 388, 1179
BseNI	ACTGG	2 cut(s)	176, 904
BseXI	GCAGC	3 cut(s)	94, 181, 799
BseYI	CCCAGC	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	616, 1052
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	292, 591
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	706, 1015
BsmAI	GTCTC	1 cut(s)	475
BsmBI	CGTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	616, 1052
Bsp1286I	GDGCHC	2 cut(s)	292, 591
Bsp143I	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	3 cut(s)	69, 362, 949
BspANI	GGCC	2 cut(s)	616, 1052
BspCNI	CTCAG	5 cut(s)	31, 304, 331, 387, 1180
BspHI	TCATGA	2 cut(s)	817, 994
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	176, 904
BssECI	CCNNGG	3 cut(s)	177, 300, 405
BssMI	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
BssNI	GRCGYC	4 cut(s)	306, 459, 468, 696
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	3 cut(s)	177, 300, 405
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	936
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	4 cut(s)	306, 459, 468, 696
BstC8I	GCNNGC	2 cut(s)	1203, 1228
BstDEI	CTNAG	5 cut(s)	39, 291, 318, 374, 1188
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	8, 862, 934, 1198
BstKTI	GATC	8 cut(s)	225, 272, 297, 342, 535, 637, 964, 1152
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 709, 1193, 1202, 1217
BstV1I	GCAGC	3 cut(s)	94, 181, 799
BstX2I	RGATCY	2 cut(s)	269, 961
BstYI	RGATCY	2 cut(s)	269, 961
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	616, 1052
BtgI	CCRYGG	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	1117
BtrI	CACGTC	2 cut(s)	592, 1021
BtsCI	GGATG	4 cut(s)	8, 862, 934, 1198
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	1203, 1228
CciI	TCATGA	2 cut(s)	817, 994
Cfr13I	GGNCC	2 cut(s)	174, 614
CseI	GACGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	22, 556, 609, 797
CviAII	CATG	8 cut(s)	25, 301, 545, 794, 818, 995, 1090, 1178
CviQI	GTAC	4 cut(s)	22, 556, 609, 797
DdeI	CTNAG	5 cut(s)	39, 291, 318, 374, 1188
DpnI	GATC	8 cut(s)	224, 271, 296, 341, 534, 636, 963, 1151
DpnII	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
EaeI	YGGCCR	1 cut(s)	1050
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	3 cut(s)	177, 300, 405
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	29
EcoT14I	CCWWGG	3 cut(s)	177, 300, 405
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	3 cut(s)	177, 300, 405
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	8 cut(s)	28, 304, 548, 797, 821, 998, 1093, 1181
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	8 cut(s)	24, 300, 544, 793, 817, 994, 1089, 1177
FauI	CCCGC	1 cut(s)	369
FbaI	TGATCA	2 cut(s)	532, 1149
FblI	GTMKAC	2 cut(s)	384, 465
Fnu4HI	GCNGC	3 cut(s)	108, 195, 813
FokI	GGATG	3 cut(s)	869, 941, 1205
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	108, 195, 813
FspBI	CTAG	3 cut(s)	123, 516, 959
GluI	GCNGC	3 cut(s)	108, 195, 813
GsaI	CCCAGC	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	616, 1052
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	448
Hin1I	GRCGYC	4 cut(s)	306, 459, 468, 696
Hin1II	CATG	8 cut(s)	28, 304, 548, 797, 821, 998, 1093, 1181
HincII	GTYRAC	2 cut(s)	385, 466
HindII	GTYRAC	2 cut(s)	385, 466
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	6 cut(s)	151, 316, 399, 423, 432, 573
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	274, 350, 361
Hpy166II	GTNNAC	4 cut(s)	358, 385, 466, 646
Hpy188I	TCNGA	7 cut(s)	134, 274, 294, 431, 443, 805, 836
Hpy188III	TCNNGA	9 cut(s)	220, 313, 343, 530, 568, 638, 818, 959, 995
Hpy8I	GTNNAC	4 cut(s)	358, 385, 466, 646
Hpy99I	CGWCG	6 cut(s)	386, 431, 464, 467, 470, 596
HpyAV	CCTTC	3 cut(s)	340, 446, 856
HpyCH4III	ACNGT	1 cut(s)	936
HpyCH4IV	ACGT	6 cut(s)	185, 306, 468, 591, 696, 1020
HpyCH4V	TGCA	8 cut(s)	110, 243, 581, 764, 887, 932, 1015, 1226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 709, 1193, 1202, 1217
HpyF3I	CTNAG	5 cut(s)	39, 291, 318, 374, 1188
HpySE526I	ACGT	6 cut(s)	185, 306, 468, 591, 696, 1020
Hsp92I	GRCGYC	4 cut(s)	306, 459, 468, 696
Hsp92II	CATG	8 cut(s)	28, 304, 548, 797, 821, 998, 1093, 1181
Ksp22I	TGATCA	2 cut(s)	532, 1149
Kzo9I	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
LmnI	GCTCC	3 cut(s)	287, 586, 709
Lsp1109I	GCAGC	3 cut(s)	94, 181, 799
LweI	GCATC	6 cut(s)	17, 241, 387, 919, 1152, 1183
MaeI	CTAG	3 cut(s)	123, 516, 959
MaeII	ACGT	6 cut(s)	185, 306, 468, 591, 696, 1020
MaeIII	GTNAC	4 cut(s)	100, 280, 895, 936
MalI	GATC	8 cut(s)	224, 271, 296, 341, 534, 636, 963, 1151
MboI	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
MboII	GAAGA	6 cut(s)	219, 509, 512, 758, 793, 1104
MflI	RGATCY	2 cut(s)	269, 961
MhlI	GDGCHC	2 cut(s)	292, 591
MluCI	AATT	4 cut(s)	29, 163, 807, 906
MlyI	GAGTC	5 cut(s)	160, 310, 408, 432, 441
MmeI	TCCRAC	2 cut(s)	409, 498
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	5 cut(s)	48, 753, 851, 1044, 1062
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	766
MwoI	GCNNNNNNNGC	5 cut(s)	296, 709, 1193, 1202, 1217
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
NlaIII	CATG	8 cut(s)	28, 304, 548, 797, 821, 998, 1093, 1181
NmeAIII	GCCGAG	1 cut(s)	1078
NmuCI	GTSAC	1 cut(s)	280
PagI	TCATGA	2 cut(s)	817, 994
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 335
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	109, 196, 814
Ple19I	CGATCG	1 cut(s)	342
PleI	GAGTC	5 cut(s)	159, 310, 407, 431, 440
PpsI	GAGTC	5 cut(s)	159, 310, 407, 431, 440
Psp124BI	GAGCTC	1 cut(s)	292
PspFI	CCCAGC	1 cut(s)	712
PspPI	GGNCC	2 cut(s)	174, 614
PsrI	GAACNNNNNNTAC	2 cut(s)	548, 580
PsuI	RGATCY	2 cut(s)	269, 961
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	4 cut(s)	23, 557, 610, 798
RsaNI	GTAC	4 cut(s)	22, 556, 609, 797
RseI	CAYNNNNRTG	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	292
SalI	GTCGAC	2 cut(s)	383, 464
SaqAI	TTAA	5 cut(s)	48, 753, 851, 1044, 1062
SatI	GCNGC	3 cut(s)	108, 195, 813
Sau3AI	GATC	8 cut(s)	222, 269, 294, 339, 532, 634, 961, 1149
Sau96I	GGNCC	2 cut(s)	174, 614
SchI	GAGTC	5 cut(s)	160, 310, 408, 432, 441
SduI	GDGCHC	2 cut(s)	292, 591
SfaNI	GCATC	6 cut(s)	17, 241, 387, 919, 1152, 1183
SgrDI	CGTCGACG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	4 cut(s)	29, 163, 807, 906
SsiI	CCGC	3 cut(s)	69, 362, 949
SspMI	CTAG	3 cut(s)	123, 516, 959
SstI	GAGCTC	1 cut(s)	292
StyI	CCWWGG	3 cut(s)	177, 300, 405
TaaI	ACNGT	1 cut(s)	936
TaiI	ACGT	6 cut(s)	188, 309, 471, 594, 699, 1023
TaqI	TCGA	6 cut(s)	251, 338, 342, 384, 465, 744
TasI	AATT	4 cut(s)	29, 163, 807, 906
TatI	WGTACW	3 cut(s)	21, 555, 608
TfiI	GAWTC	1 cut(s)	573
Tru1I	TTAA	5 cut(s)	48, 753, 851, 1044, 1062
Tru9I	TTAA	5 cut(s)	48, 753, 851, 1044, 1062
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	107, 194, 812
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	17, 561, 782, 990
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	958
XmiI	GTMKAC	2 cut(s)	384, 465
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	3 cut(s)	123, 516, 959
ZraI	GACGTC	3 cut(s)	307, 469, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.